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Deng YR, Li YF, Yang H, Fan YR, Huang Y. Synthesis, DNA binding of bis-naphthyl ferrocene derivatives and the application as new electroactive indicators for DNA biosensor. J Inorg Biochem 2024; 257:112615. [PMID: 38772187 DOI: 10.1016/j.jinorgbio.2024.112615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 04/29/2024] [Accepted: 05/15/2024] [Indexed: 05/23/2024]
Abstract
A series of bis-naphthyl ferrocene derivatives were synthesized and characterized. Based on the results obtained from UV-visible absorption titration and ethidium bromide (EB) displacement experiments, it was observed that the synthesized compounds exhibited a strong binding ability to dsDNA. In comparison to the viscosity curve of EB, the tested compounds demonstrated a bisintercalation binding mode when interacting with CT-DNA. Differential pulse voltammetry (DPV) was employed to assess the binding specificity of these indicators towards ssDNA and dsDNA. All tested indicators displayed more pronounced signal differences before and after hybridization between probe nucleic acids and target nucleic acids compared to Methylene Blue (MB). Among the evaluated compounds, compound 3j containing an ether chain showed superior performance as an indicator, making it suitable for constructing DNA-based biosensors. Under optimized conditions including probe ssDNA concentration and indicator concentration, this biosensor exhibited good sensitivity, reproducibility, stability, and selectivity. The limit of detection was calculated as 4.53 × 10-11 mol/L. Furthermore, when utilizing 3j as the indicator in serum samples, the biosensor achieved satisfactory recovery rates for detecting the BRCA1 gene.
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Affiliation(s)
- Ya-Ru Deng
- School of Pharmacy, Ningxia Medical University, Yinchuan 750004, PR China; Key Laboratory of Protection, Development and Utilization of Medicinal Resources in Liupanshan Area Ministry of Education, Ningxia Medical University, Yinchuan 750004, PR China
| | - Ya-Fei Li
- School of Pharmacy, Ningxia Medical University, Yinchuan 750004, PR China; Key Laboratory of Protection, Development and Utilization of Medicinal Resources in Liupanshan Area Ministry of Education, Ningxia Medical University, Yinchuan 750004, PR China
| | - Hao Yang
- School of Pharmacy, Ningxia Medical University, Yinchuan 750004, PR China; Key Laboratory of Protection, Development and Utilization of Medicinal Resources in Liupanshan Area Ministry of Education, Ningxia Medical University, Yinchuan 750004, PR China; Collaborative Innovation Center for Ningxia Characteristic Traditional Chinese Medicine by Ningxia Hui Autonomous Region & Education Ministry of P.R. China, Ningxia Characteristic Traditional Chinese Medicine Modern Engineering and Technique Research Center, Ningxia Key Laboratory of Drug Development and Generic Drug Research, Key Laboratory of Ningxia Ethnomedicine Modernization, Ministry of Education, Yinchuan 750004, PR China
| | - Yan-Ru Fan
- School of Pharmacy, Ningxia Medical University, Yinchuan 750004, PR China; Key Laboratory of Protection, Development and Utilization of Medicinal Resources in Liupanshan Area Ministry of Education, Ningxia Medical University, Yinchuan 750004, PR China; Collaborative Innovation Center for Ningxia Characteristic Traditional Chinese Medicine by Ningxia Hui Autonomous Region & Education Ministry of P.R. China, Ningxia Characteristic Traditional Chinese Medicine Modern Engineering and Technique Research Center, Ningxia Key Laboratory of Drug Development and Generic Drug Research, Key Laboratory of Ningxia Ethnomedicine Modernization, Ministry of Education, Yinchuan 750004, PR China.
| | - Yu Huang
- School of Pharmacy, Ningxia Medical University, Yinchuan 750004, PR China; Key Laboratory of Protection, Development and Utilization of Medicinal Resources in Liupanshan Area Ministry of Education, Ningxia Medical University, Yinchuan 750004, PR China; Collaborative Innovation Center for Ningxia Characteristic Traditional Chinese Medicine by Ningxia Hui Autonomous Region & Education Ministry of P.R. China, Ningxia Characteristic Traditional Chinese Medicine Modern Engineering and Technique Research Center, Ningxia Key Laboratory of Drug Development and Generic Drug Research, Key Laboratory of Ningxia Ethnomedicine Modernization, Ministry of Education, Yinchuan 750004, PR China.
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Ariffin EY, Zakariah EI, Ruslin F, Kassim M, Yamin BM, Heng LY, Hasbullah SA. Hexaferrocenium tri[hexa(isothiocyanato)iron(III)] trihydroxonium complex as a new DNA intercalator for electrochemical DNA biosensor. Sci Rep 2021; 11:7883. [PMID: 33846405 PMCID: PMC8041802 DOI: 10.1038/s41598-021-86939-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Accepted: 03/17/2021] [Indexed: 11/09/2022] Open
Abstract
Ferrocene or ferrocenium has been widely studied in the field of organometallic complexes because of its stable thermodynamic, kinetic and redox properties. Novel hexaferrocenium tri[hexa(isothiocyanato)iron(III)]trihydroxonium (HexaFc) complex was the product from the reaction of ferrocene, maleic acid and ammonium thiocyanate and was confirmed by elemental analysis CHNS, FTIR and single crystal X-ray crystallography. In this study, HexaFc was used for the first time as an electroactive indicator for porcine DNA biosensor. The UV-Vis DNA titrations with this compound showed hypochromism and redshift at 250 nm with increasing DNA concentrations. The binding constant (Kb) for HexaFc complex towards CT-DNA (calf-thymus DNA) was 3.1 × 104 M-1, indicated intercalator behaviour of the complex. To test the usefulness of this complex for DNA biosensor application, a porcine DNA biosensor was constructed. The recognition probes were covalently immobilised onto silica nanospheres (SiNSs) via glutaraldehyde linker on a screen-printed electrode (SPE). After intercalation with the HexaFc complex, the response of the biosensor to the complementary porcine DNA was measured using differential pulse voltammetry. The DNA biosensor demonstrated a linear response range to the complementary porcine DNA from 1 × 10-6 to 1 × 10-3 µM (R2 = 0.9642) with a limit detection of 4.83 × 10-8 µM and the response was stable up to 23 days of storage at 4 °C with 86% of its initial response. The results indicated that HexaFc complex is a feasible indicator for the DNA hybridisation without the use of a chemical label for the detection of porcine DNA.
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Affiliation(s)
- Eda Yuhana Ariffin
- Department of Chemical Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia (UKM), 43600, Bangi, Selangor Darul Ehsan, Malaysia
| | - Emma Izzati Zakariah
- Department of Chemical Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia (UKM), 43600, Bangi, Selangor Darul Ehsan, Malaysia
| | - Farah Ruslin
- Department of Chemical Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia (UKM), 43600, Bangi, Selangor Darul Ehsan, Malaysia
| | - Muhammad Kassim
- Department of Chemical Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia (UKM), 43600, Bangi, Selangor Darul Ehsan, Malaysia
| | - Bohari M Yamin
- Department of Chemical Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia (UKM), 43600, Bangi, Selangor Darul Ehsan, Malaysia
| | - Lee Yook Heng
- Department of Chemical Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia (UKM), 43600, Bangi, Selangor Darul Ehsan, Malaysia
| | - Siti Aishah Hasbullah
- Department of Chemical Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia (UKM), 43600, Bangi, Selangor Darul Ehsan, Malaysia.
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Kusnin N, Yusof NA, Abdullah J, Sabri S, Mohammad F, Mustafa S, Ab Mutalib NA, Sato S, Takenaka S, Parmin NA, Al-Lohedan HA. Electrochemical sensory detection of Sus scrofa mtDNA for food adulteration using hybrid ferrocenylnaphthalene diimide intercalator as a hybridization indicator. RSC Adv 2020; 10:27336-27345. [PMID: 35516939 PMCID: PMC9055540 DOI: 10.1039/d0ra03585h] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Accepted: 06/19/2020] [Indexed: 11/21/2022] Open
Abstract
In this study, an electrochemical DNA biosensor was developed based on the fabrication of silicon nanowires/platinum nanoparticles (SiNWs/PtNPs) on a screen-printed carbon electrode (SPCE) for the detection of Sus scrofa mitochondrial DNA (mtDNA) in food utilizing a new hybrid indicator, ferrocenylnaphthalene diimide (FND). The morphology and elemental composition of the SiNWs/PtNPs-modified SPCE was analyzed by field emission scanning electron microscopy (FESEM) combined with energy dispersive X-ray spectroscopy (EDX). Cyclic voltammetry (CV) was used to study the electrical contact between the PtNPs and the screen-printed working electrode through SiNWs, while electrochemical impedance spectroscopy (EIS) was used to measure the charge transfer resistance of the modified electrode. The results clearly showed that the SiNWs/PtNPs were successfully coated onto the electrode and the effective surface area for the SiNWs/PtNPs-modified SPCE was increased 16.8 times as compared with that of the bare SPCE. Differential pulse voltammetry used for the detection of porcine DNA with FND as an intercalator confirmed its specific binding to the double-stranded DNA (dsDNA) sequences. The developed biosensor showed a selective response towards complementary target DNA and was able to distinguish non-complementary and mismatched DNA oligonucleotides. The SiNWs/PtNPs-modified SPCE that was fortified with DNA hybridization demonstrated good linearity in the range of 3 × 10−9 M to 3 × 10−5 M (R2 = 0.96) with a detection limit of 2.4 × 10−9 M. A cross-reactivity study against various types of meat and processed food showed good reliability for porcine samples. An electrochemical DNA biosensor was developed based on the fabrication of silicon nanowires/platinum nanoparticles on a screen-printed carbon electrode for the detection of Sus scrofa mitochondrial DNA in food.![]()
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Gaiji H, Jolly P, Ustuner S, Goggins S, Abderrabba M, Frost CG, Estrela P. A Peptide Nucleic Acid (PNA)-DNA Ferrocenyl Intercalator for Electrochemical Sensing. ELECTROANAL 2016. [DOI: 10.1002/elan.201600576] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Houda Gaiji
- Department of Chemistry, Faculty of Mathematical, Physical and Natural Sciences of Tunis; University Tunis El Manar; Tunis 2092 Tunisia
- Laboratory of Materials Molecules and Applications (LMMA), Preparatory Institute of Scientific and Technical Studies (IPEST); University of Carthage, La Marsa; Tunis 2070 Tunisia
| | - Pawan Jolly
- Department of Electronic & Electrical Engineering; University of Bath; Bath BA2 7AY United Kingdom
| | - Serife Ustuner
- Department of Electronic & Electrical Engineering; University of Bath; Bath BA2 7AY United Kingdom
- Department of Chemistry; University of Bath; Bath BA2 7AY United Kingdom
| | - Sean Goggins
- Department of Chemistry; University of Bath; Bath BA2 7AY United Kingdom
| | - Manef Abderrabba
- Laboratory of Materials Molecules and Applications (LMMA), Preparatory Institute of Scientific and Technical Studies (IPEST); University of Carthage, La Marsa; Tunis 2070 Tunisia
| | | | - Pedro Estrela
- Department of Electronic & Electrical Engineering; University of Bath; Bath BA2 7AY United Kingdom
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Pedotti S, Patti A, Dedola S, Barberis A, Fabbri D, Dettori MA, Serra PA, Delogu G. Synthesis of new ferrocenyl dehydrozingerone derivatives and their effects on viability of PC12 cells. Polyhedron 2016. [DOI: 10.1016/j.poly.2016.05.039] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Al Kobaisi M, Bhosale SV, Latham K, Raynor AM, Bhosale SV. Functional Naphthalene Diimides: Synthesis, Properties, and Applications. Chem Rev 2016; 116:11685-11796. [DOI: 10.1021/acs.chemrev.6b00160] [Citation(s) in RCA: 557] [Impact Index Per Article: 69.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Mohammad Al Kobaisi
- School
of Applied Sciences, RMIT University
, GPO Box 2476, Melbourne, Victoria
3001, Australia
| | - Sidhanath V. Bhosale
- Polymers
and Functional Materials Division, CSIR-Indian Institute of Chemical Technology
, Hyderabad, Telangana-500007, India
| | - Kay Latham
- School
of Applied Sciences, RMIT University
, GPO Box 2476, Melbourne, Victoria
3001, Australia
| | - Aaron M. Raynor
- School
of Applied Sciences, RMIT University
, GPO Box 2476, Melbourne, Victoria
3001, Australia
| | - Sheshanath V. Bhosale
- School
of Applied Sciences, RMIT University
, GPO Box 2476, Melbourne, Victoria
3001, Australia
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7
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Sun R, Wang L, Yu H, Abdin ZU, Chen Y, Huang J, Tong R. Molecular Recognition and Sensing Based on Ferrocene Derivatives and Ferrocene-Based Polymers. Organometallics 2014. [DOI: 10.1021/om5000453] [Citation(s) in RCA: 126] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Ruoli Sun
- State
Key Laboratory of Chemical Engineering, Department of Chemical and
Biological Engineering, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Li Wang
- State
Key Laboratory of Chemical Engineering, Department of Chemical and
Biological Engineering, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Haojie Yu
- State
Key Laboratory of Chemical Engineering, Department of Chemical and
Biological Engineering, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Zain-ul- Abdin
- State
Key Laboratory of Chemical Engineering, Department of Chemical and
Biological Engineering, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Yongsheng Chen
- State
Key Laboratory of Chemical Engineering, Department of Chemical and
Biological Engineering, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Jin Huang
- State
Key Laboratory of Chemical Engineering, Department of Chemical and
Biological Engineering, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Rongbai Tong
- State
Key Laboratory of Chemical Engineering, Department of Chemical and
Biological Engineering, Zhejiang University, Hangzhou 310027, People’s Republic of China
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Lyall CL, Shotton CC, Pérez-Salvia M, Dan Pantoş G, Lewis SE. Direct core functionalisation of naphthalenediimides by iridium catalysed C–H borylation. Chem Commun (Camb) 2014; 50:13837-40. [DOI: 10.1039/c4cc06522k] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report the first boron-substituted naphthalenediimides (NDIs), prepared by iridium catalysed C–H activation. Both mono- and diborylated products are available, which have been further elaborated by Suzuki–Miyaura coupling.
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NISHIZAWA S, SATO Y, TERAMAE N. Recent Progress in Abasic Site-binding Small Molecules for Detecting Single-base Mutations in DNA. ANAL SCI 2014; 30:137-42. [DOI: 10.2116/analsci.30.137] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
- Seiichi NISHIZAWA
- Department of Chemistry, Graduate School of Science, Tohoku University
| | - Yusuke SATO
- Department of Chemistry, Graduate School of Science, Tohoku University
| | - Norio TERAMAE
- Department of Chemistry, Graduate School of Science, Tohoku University
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Rhoden Smith A, Iverson BL. Threading polyintercalators with extremely slow dissociation rates and extended DNA binding sites. J Am Chem Soc 2013; 135:12783-9. [PMID: 23919778 DOI: 10.1021/ja4057344] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
The development of small molecules that bind DNA sequence specifically has the potential to modulate gene expression in a general way. One mode of DNA binding is intercalation, or the insertion of molecules between DNA base pairs. We have developed a modular polyintercalation system in which intercalating naphthalene diimide (NDI) units are connected by flexible linkers that alternate between the minor and major grooves of DNA when bound. We recently reported a threading tetraintercalator with a dissociation half-life of 16 days, the longest reported to date, from its preferred 14 bp binding site. Herein, three new tetraintercalator derivatives were synthesized with one, two, and three additional methylene units in the central major groove-binding linker. These molecules displayed dissociation half-lives of 57, 27, and 18 days, respectively, from the 14 bp site. The optimal major groove-binding linker was used in the design of an NDI hexaintercalator that was analyzed by gel-shift assays, DNase I footprinting, and UV-vis spectroscopy. The hexaintercalator bound its entire 22 bp binding site, the longest reported specific binding site for a synthetic, non-nucleic acid-based DNA binding molecule, but with a significantly faster dissociation rate compared to the tetraintercalators.
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Affiliation(s)
- Amy Rhoden Smith
- Department of Chemistry and Biochemistry, The University of Texas at Austin, Austin, Texas 78712, USA
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