Genomic selection performs as effectively as phenotypic selection for increasing seed yield in soybean

Increasing the rate of genetic gain for seed yield remains the primary breeding objective in both public and private soybean [Glycine max (L.) Merr.] breeding programs. Genomic selection (GS) has the potential to accelerate the rate of genetic gain for soybean seed yield. Limited studies to date have validated GS accuracy and directly compared GS with phenotypic selection (PS), and none have been reported in soybean. This study conducted the first empirical validation of GS for increasing seed yield using over 1,500 lines and over 7 yr (2010-2016) of replicated experiments in the University of Nebraska-Lincoln soybean breeding program. The study was designed to capture the varying genetic relatedness of the training population to three validation sets: two large biparental populations (TBP-1 and TBP-2) and a large validation set comprised of 457 preselected advanced lines derived from 45 biparental populations (TMP). We found that prediction accuracy (.54) realized in our validation experiments was comparable with what we obtained from a series of cross-validation experiments (.64). Both GS and PS were more effective for increasing the population mean performance compared with random selection (RS). We found a selection advantage of GS over PS, where higher genetic gain and identification of top-performing lines was maximized at 10-20% selected proportion. Genomic selection led to small increases in genetic similarity when compared with PS and RS presumably because of a significant shift on allelic frequencies toward the extremes, suggesting that it could erode genetic diversity more quickly. Overall, we found that GS can perform as effectively as PS but that measures should be considered to protect against loss of genetic variance when using GS.

Technological advances in maize breeding: past, present and future

Maize has for many decades been both one of the most important crops worldwide and one of the primary genetic model organisms. More recently, maize breeding has been impacted by rapid technological advances in sequencing and genotyping technology, transformation including genome editing, doubled haploid technology, parallelled by progress in data sciences and the development of novel breeding approaches utilizing genomic information. Herein, we report on past, current and future developments relevant for maize breeding with regard to (1) genome analysis, (2) germplasm diversity characterization and utilization, (3) manipulation of genetic diversity by transformation and genome editing, (4) inbred line development and hybrid seed production, (5) understanding and prediction of hybrid performance, (6) breeding methodology and (7) synthesis of opportunities and challenges for future maize breeding.

Analysis of Long Term Study Indicates Both Agronomic Optimal Plant Density and Increase Maize Yield per Plant Contributed to Yield Gain

Concurrent to yield, maize (Zea Mays L.) plant density has significantly increased over the years. Unlike yield, however, the rate of change in plant density and its contribution to maize yield gain are rarely reported. The main objectives of this study were to examine the trend in the agronomic optimum plant density (AOPD) and quantify the contribution of plant density to yield gain. Maize hybrid by seeding rate trials were conducted from 1987-2016 across North America (187,662 data points). Mixed model, response surface, and simple linear regression analyses were applied on the meta-data. New outcomes from this analysis are: (i) an increase in the AOPD at rate of 700 plant ha^-1 yr^-1, (ii) increase in the AOPD of 1386, 580 and 404 plants ha^-1 yr^-1 for very high yielding (VHY, > 13 Mg ha^-1), high yielding (HY, 10-13 Mg ha^-1) and medium yielding (MY, 7-10 Mg ha^-1), respectively, with a lack of change for the low yielding (LY, < 7 Mg ha^-1) environment; (iii) plant density contribution to maize yield gain ranged from 8.5% to 17%, and (iv) yield improvement was partially explained by changes in the AOPD but we also identified positive impacts on yield components as other sources for yield gain.

Soil water capture trends over 50 years of single-cross maize (Zea mays L.) breeding in the US corn-belt

Breeders have successfully improved maize (Zea mays L.) grain yield for the conditions of the US corn-belt over the past 80 years, with the past 50 years utilizing single-cross hybrids. Long-term improvement for grain yield under water-limited conditions has also been reported. Grain yield under water-limited conditions depends on water use, water use efficiency, and harvest index. It has been hypothesized that long-term genetic gain for yield could be due, in part, to increased water capture from the soil. This hypothesis was tested using a set of elite single-cross hybrids that were released by DuPont Pioneer between 1963 and 2009. Eighteen hybrids were grown in the field during 2010 and 2011 growing seasons at Woodland, CA, USA. Crops grew predominantly on stored soil water and drought stress increased as the season progressed. Soil water content was measured to 300cm depth throughout the growing season. Significant water extraction occurred to a depth of 240-300cm and seasonal water use was calculated from the change in soil water over this rooting zone. Grain yield increased significantly with year of commercialization, but no such trend was observed for total water extraction. Therefore, the measured genetic gain for yield for the period represented by this set of hybrids must be related to either increased efficiency of water use or increased carbon partitioning to the grain, rather than increased soil water uptake.