Enhanced removal of cadmium from wastewater with coupled biochar and Bacillus subtilis

Phenotypic characterization for bioremediation suitability of isolates from Southern Tunisian tannery effluent

Effluents from the leather tanning industry contain diverse pollutants, including hazardous heavy metals, posing threats to public health and the surrounding environment. Indigenous bacterial isolates can represent an eco-friendly approach for tannery wastewater treatment; however, phenotypic characterization is necessary to determine whether these strains are suitable for bioremediation. In the present study, we analyzed seven new Enterococcus faecium strains and two new Bacillus subtillis strains isolated from effluents from the Southern Tunisian Tannery (ESTT). We evaluated phenotypic features beneficial for bioremediation, including biofilm formation, hydrophobicity, and exoenzyme activities. Additionally, we examined characteristics naturally occurring in environmental bacteria but less desirable in strains selected for bioremediation, such as antibiotic resistances and pathogenicity indicators. The observed phenotypes were then compared with whole-genome analysis. We observed biofilm production in two slime-producing bacteria, B. licheniformis RLT6, and E. faecium RLT8. Hydrophobicity of E. faecium strains RLT1, RLT5, RLT8, and RLT9, as well as B. licheniformis RLT6 correlated positively with increasing ESTT concentration. Exoenzyme activities were detected in E. faecium strains RLT2, RLT4, and RLT7, as well as B. licheniformis RLT6. As anticipated, all strains exhibited common resistances to antibiotics and hemolysis, which are widespread in nature and do not hinder their application for bioremediation. Importantly, none of the strains exhibited the pathogenic hypermucoviscosity phenotype. To the best of our knowledge, this is the first report consolidating all these phenotypic characteristics concurrently, providing a complete overview of strains suitability for bioremediation. IMPORTANCE: The study evaluates the bioremediation potential of seven Enterococcus faecium strains and two Bacillus subtillis strains isolated from the effluents from the Southern Tunisian tannery (ESTT), which pose threats to public health and environmental integrity. The analysis primarily examines the phenotypic traits crucial to bioremediation, including biofilm formation, hydrophobicity, and exoenzyme activities, as well as characteristics naturally occurring in environmental bacteria related to heavy metal resistance, such as antibiotic resistances. Several strains were found to have high bioremediation potential and exhibit only antibiotic resistances commonly found in nature, ensuring their application for bioremediation remains uncompromised. The results of the exhaustive phenotypic analysis are contrasted with the whole genome sequences of the nine strains, underscoring the appropriateness of these bacterial strains for eco-friendly interventions in tannery wastewater treatment.

Effects of exogenous riboflavin or cytochrome addition on the cathodic reduction of Cr(VI) in microbial fuel cell with Shewanella putrefaciens

Bioreduction of Cr(VI) is recognized as a cost-effective and environmentally friendly method, attracting widespread interest. However, the slow rate of Cr(VI) bioreduction remains a practical challenge. Additionally, the direct removal efficiency of microbes for high concentrations of Cr(VI) is not ideal due to the toxicity. Therefore, this study investigated the effects of exogenous riboflavin or cytochrome on the cathodic reduction of Cr(VI) in microbial fuel cells. The results demonstrated that the exogenous riboflavin or cytochrome effectively improved the voltage output of the cells, with riboflavin increasing the voltage by 52.08%. Within the first 24 h, the Cr(VI) removal ratio in the normal, cytochrome, and riboflavin groups was 14.3%, 29.3%, and 53.8%, respectively. And the final removal ratio was 55.1%, 69.1%, and 98.0%, respectively. These results showed different enhancement effects of riboflavin and cytochrome on Cr(VI) removal. The analysis of riboflavin and cytochrome contents revealed that the additions did not have a significant impact on the autocrine riboflavin of S. putrefaciens, but affected the autocrine cytochrome. SEM, XPS, and FTIR results confirmed the presence of reduced Cr(III) on the cathode, which formed precipitate and adhered to the cathode surface. The EDS analysis showed that the amount of Cr on the cathode in normal, cytochrome, and riboflavin groups was 4.71%, 6.37%, 7.56%, respectively, which was consistent with the voltage and Cr(VI) removal data. These findings demonstrated the significant enhancement of exogenous riboflavin or cytochrome on Cr(VI) reduction, thereby providing data reference for the future bio-assisted remediation of Cr(VI) pollution.

Efficient removal of Cd(II) and Pb(II) from aqueous solution using biochars derived from food waste

Massive amount of food waste has been generated annually, posing a threat to ecological sustainability and the social economy due to current disposal methods. Urgent action is needed worldwide to convert the traditional pathway for treating food waste into a sustainable bioeconomy, as this will significantly benefit food chain management. This study explores the use of pyrolysis to produce different types of food waste biochars and investigates their adsorption capabilities for removing Cd2+ and Pb2+ in aqueous solution. The results indicated that co-pyrolysis biochar from fresh food waste and rice husk (FWRB) exhibited superior adsorption performance for Cd2+ (61.84 mg·g-1) and Pb2+ (245.52 mg·g-1), respectively. Pseudo-second-order kinetics (0.74 ≤ R2 ≤ 0.98) and Langmuir isotherms (0.87 ≤ R2 ≤ 0.98) indicated that the immobilized Cd2+ and Pb2+ on biochars were mainly attributed to the chemisorption, including precipitation with minerals (e.g., carbonates, silicates, and phosphate), complexation with functional groups (-OH), cation exchange (-COO-), and coordination with π-electrons. Furthermore, FWRB demonstrated reduced EC and Na content in comparison to food waste digestate biochar (FWDB) and food waste digestate co-pyrolysis with sawdust biochar (FWSB), with levels of Cd and Pb falling below China's current guideline thresholds. These findings suggested that co-pyrolysis of fresh food waste with rice husk could be applicable to the recycling of food waste into biochar products for heavy metal stabilization in contaminated water and soils.

Investigation of metal interactions with YrpE protein of Bacillus subtilis by a polyhistidine peptide model

The use of model peptides that can simulate the behaviour of a protein domain is a very successful analytical method to study the metal coordination sites in biological systems. Here we study zinc and copper binding ability of the sequence HTHEHSHDHSHAH, which serves as model for the metal interactions with YrpE, a putative metal-binding protein of the ZinT family identified in Bacillus subtilis. Compared to other ZinT proteins secreted by Gram-negative bacteria, the metal-coordination properties of YrpE N-terminal histidine-rich domain have not been yet characterized. Different independent analytical methods, aimed at providing information on the stability and structure of the formed species, have been employed, including potentiometric titrations, electrospray ionization mass spectrometry, UV-Vis spectrophotometry, circular dichroism and electron paramagnetic resonance spectroscopy. The obtained speciation models and equilibrium constants allowed to compare the metal-binding ability of the investigated polyhistidine sequence with that of other well-known histidine-rich peptides. Our thermodynamic results revealed that the YrpE domain HTHEHSHDHSHAH forms more stable metal complexes than other His-rich domains of similar ZinT proteins. Moreover, the studied peptide, containing the alternated (-XH-)n motif, proved to be even more effective than the His6-tag (widely used in immobilized metal ion affinity chromatography) in binding zinc ions.

Comparative Genomics Reveals Novel Species and Insights into the Biotechnological Potential, Virulence, and Resistance of Alcaligenes

Alcaligenes is a cosmopolitan bacterial genus that exhibits diverse properties which are beneficial to plants. However, the genomic versatility of Alcaligenes has also been associated with the ability to cause opportunistic infections in humans, raising concerns about the safety of these microorganisms in biotechnological applications. Here, we report an in-depth comparative analysis of Alcaligenes species using all publicly available genomes to investigate genes associated with species, biotechnological potential, virulence, and resistance to multiple antibiotics. Phylogenomic analysis revealed that Alcaligenes consists of at least seven species, including three novel species. Pan-GWAS analysis uncovered 389 species-associated genes, including cold shock proteins (e.g., cspA) and aquaporins (e.g., aqpZ) found exclusively in the water-isolated species, Alcaligenes aquatilis. Functional annotation of plant-growth-promoting traits revealed enrichment of genes for auxin biosynthesis, siderophores, and organic acids. Genes involved in xenobiotic degradation and toxic metal tolerance were also identified. Virulome and resistome profiles provide insights into selective pressures exerted in clinical settings. Taken together, the results presented here provide the grounds for more detailed clinical and ecological studies of the genus Alcaligenes.

Characterization of modified rice straw biochar in immobilizing Bacillus subtilis 168 and evaluation on its role as a novel agent for zearalenone-removal delivery

Microbial remediation of environmental pollutants can be advanced by carrier based cells immobilization. Whereas the effects of microorganisms immobilized on biochar for removal of zearalenone (ZEN) still remain unknown. Herein, this work presented the characterization of rice straw biochar (RSB) around modification in immobilizing Bacillus subtilis 168 and the role in fighting ZEN in vitro. Specifically, 10% of RSB with pH 5 condition were optimal for bearing cells, where majority of cells loaded inside the pore and minority on surface with agglomeration or scattering status. Octadecyl trimethyl ammonium chloride-inclusion RSB showed better performances including over 93% of ZEN detoxification rate (32.48% in free cells), cells preservation, and stability of detoxification in simulated gastrointestinal environment. RSB treated with sulphuric acid made nutrients adsorption generally less than 6.5%. No residues of α-ZEL and α-ZAL were found in ZEN biotransformation process whether by free cells or composites. Mechanism discussion implied that predominant monolayer chemisorption by RSB and subsequent biodegradation by extracellular enzymes from microorganism involved in ZEN-removal process. Collectively, these findings contribute to provide an applying strategy for coordination of biochar and microorganisms as potentially mycotoxin detoxifying agent in agricultural feed bioremediation and environmental decontamination processes.

Bacteria-based biochar as a persulfate activator to degrade organic pollutants

Carbon-based catalysts for activating persulfate to drive advanced oxidation processes (AOPs) are widely used in wastewater treatment. In this study, Shewanella oneidensis MR-1, a typical ferric reducing electroactive microorganism, was utilized as the raw material of biochar (BC) to prepare a novel green catalyst (MBC). The effect of MBC on activating persulfate (PS) to degrade rhodamine B (RhB) was evaluated. Experimental results showed that MBC could effectively activate PS to degrade RhB to reach 91.70% within 270 min, which was 47.4% higher than that of pure strain MR-1. The increasing dosage of PS and MBC could improve the removal of RhB. Meanwhile, MBC/PS can well perform in a wide pH range, and MBC showed good stability, achieving 72.07% removal of RhB with MBC/PS after 5 cycles. Furthermore, the free radical quenching test and EPR experiments confirmed the presence of both free radical and non-free radical mechanisms in the MBC/PS system, with •OH, SO4•- and 1O2 contributing to the effective degradation of RhB. This study successfully provided a new application for bacteria to be used in the biochar field.

Insight into biofilm-forming patterns: biofilm-forming conditions and dynamic changes in extracellular polymer substances

The microbial biofilm adheres to the surface of the carrier, which protects the pollutant-degrading bacteria and resists harsh environments; thus, research on biofilm-forming patterns will help promote the application of biofilms in wastewater treatment. Herein, univariate analysis and response surface methodology (RSM) confirmed that glucose and mannose at 3-5 g/L promoted biofilm formation. Notably, the microplate method demonstrated that compared to trivalent cations, divalent cations could more greatly enhance the activity (especially magnesium) of the biofilm matrix, and the period of biofilm formation in the three strains was divided into the following stages: initial attachment (0-10 h), microcolony (10-24 h), maturation (24-48 h), and dispersion (36-72 h). During maturation, large amounts of extracellular polysaccharides (EPs) and extracellular DNA (eDNA) were distributed in the extracellular and intracellular spaces, respectively, as observed by super-resolution structured illumination microscopy (SR-SIM). This study enhances the understanding of the characteristics and patterns of biofilm formation and can facilitate the application of biofilms in wastewater treatment.

Immobilization of microbes on biochar for water and soil remediation: A review

Biochar has caught great attention over the last decade with the loose and porous structure, and carbon stability provides suitable living conditions for the growth and activity of microorganisms. This review provided a comprehensive summary of biochar immobilization microbe (BIM) in water and soil decontamination. Firstly, the bacterial immobilization techniques including adsorption, entrapping, and covalence methods were exhibited. Secondly, the applications of BIM in water and soil environmental remediation were introduced, mainly including the treatment of organic pollutants, heavy metals, and N/P, among which the most frequently immobilized microorganism was Bacillus. Then, the mechanisms of adsorption, redox, and degradation were analyzed. Finally, pertinent questions for future research of BIM technology were proposed. The purpose of this paper is to provide useful background information for the selection of better biochar fixation microorganisms for water and soil remediation.

Mixed bacteria-loaded biochar for the immobilization of arsenic, lead, and cadmium in a polluted soil system: Effects and mechanisms

The present study explored the immobilization of mixed bacteria-loaded biochar on As, Pb, and Cd was explored. Physisorption and sodium alginate encapsulation were used to synthesize two kinds of mixed bacteria-loaded biochars, referred to as BCM and BCB. The observations of Scanning electron microscope, X-ray diffraction, and Fourier transform infrared spectroscopy distinctly demonstrated the colonization of mixed bacteria on biochar. Besides, the addition of BCM and BCB could increase soil pH with increasing incubation time. The residual fraction of heavy metals and soil dehydrogenase activities were also enhanced after 28 days of incubation. Pb was mainly immobilized by co-precipitation, which meant that Pb could be converted into a consistent crystalline form such as Pb₅(PO₄)₃OH. The X-ray photoelectron spectroscopy and X-ray diffraction analyses of materials identified the formation of Ca₂As₂O₇ and the presence of oxidation from trivalent arsenic to pentavalent arsenic. Cd was adsorbed by forming precipitations (CdCO₃) and exchanging ions with the BCM and BCB. Synergistic reactions between anions and cations also contributed to the immobilization of heavy metals, such as the formation of PbAs₂O₆ and Cd₃(AsO₄)₂. These results confirmed that mixed bacteria-loaded biochar was a feasible technology for the remediation of heavy metals contamination in site soils.