Biosorption of heavy metals by Streptomyces species — an overview

Coriander (Coriandrum sativum) Cultivation Combined with Arbuscular Mycorrhizal Fungi Inoculation and Steel Slag Application Influences Trace Elements-Polluted Soil Bacterial Functioning

The cultivation of aromatic plants for the extraction of essential oils has been presented as an innovative and economically viable alternative for the remediation of areas polluted with trace elements (TE). Therefore, this study focuses on the contribution of the cultivation of coriander and the use of arbuscular mycorrhizal fungi (AMF) in combination with mineral amendments (steel slag) on the bacterial function of the rhizosphere, an aspect that is currently poorly understood and studied. The introduction of soil amendments, such as steel slag or mycorrhizal inoculum, had no significant effect on coriander growth. However, steel slag changed the structure of the bacterial community in the rhizosphere without affecting microbial function. In fact, Actinobacteria were significantly less abundant under slag-amended conditions, while the relative proportion of Gemmatimonadota increased. On the other hand, the planting of coriander affects the bacterial community structure and significantly increased the bacterial functional richness of the amended soil. Overall, these results show that planting coriander most affected the structure and functioning of bacterial communities in the TE-polluted soils and reversed the effects of mineral amendments on rhizosphere bacterial communities and their activities. This study highlights the potential of coriander, especially in combination with steel slag, for phytomanagement of TE-polluted soils, by improving soil quality and health.

Comparison of composting factors, heavy metal immobilization, and microbial activity after biochar or lime application in straw-manure composting

Composting is an efficient way of disposing agricultural solid wastes as well as passivating heavy metals (HMs). Herein, equivalent (3%) biochar (BC) or lime (LM) were applied in rice straw and swine manure composting, with no additives applied as control group (CK). The results indicated that both the additives increased NO₃^--N content, organic matter degradation, humus formation, and HM immobilization in composting, and the overall improvement of lime was more significant. In addition, the additives optimized the bacterial community of compost, especially for thermophilic and mature phase. Lime stimulated the growth of Bacillus, Peptostreptococcus, Clostridium, Turicibacter, Clostridiaceae and Pseudomonas, which functioned well in HM passivation via biosorption, bioleaching, or promoting HM-humus formation by secreting hydrolases. Lime (3%) as additive is recommended in swine manure composting to promote composting maturity and reduce HM risk. The study present theoretical guidance in improving composting products quality for civil and industrial composting.

Removal of triphenylmethane dyes by Streptomyces bacillaris: A study on decolorization, enzymatic reactions and toxicity of treated dye solutions

This study revealed Streptomyces bacillaris as an efficient biological agent for the removal of triphenylmethane (TPM) dyes. The isolate decolorized Malachite Green (MG), Methyl Violet (MV), Crystal Violet (CV), and Cotton Blue (CB) effectively. S. bacillaris in the treated dye solutions were analyzed for enzyme production, and the cell biomass was observed for functional groups and cell morphology. The treated dye solutions were also analyzed for degraded compounds and their toxicity. Results revealed high decolorization activities for MG (94.7%), MV (91.8%), CV (86.6%), CB (68.4%), attributed to both biosorption and biodegradation. In biosorption, dye molecules interacted with the hydroxyl, amino, phosphoryl, and sulfonyl groups present on the cell surface. Biodegradation was associated with induced activities of MnP and NADH-DCIP reductase, giving rise to various simpler compounds. The degraded compounds in the treated dyes were less toxic, as revealed by the significant growth of Vigna radiata in the phytotoxicity test. There were no significant changes in cell morphology before and after use in dye solutions, suggesting S. bacillaris is less susceptible to dye toxicity. This study concluded that S. bacillaris demonstrated effective removal of TPM dyes via biosorption and biodegradation, rendering the treated dyes less toxic than untreated dyes. Findings in this study enabled further explorations into the potential application of lesser-known actinobacteria (i.e. Streptomyces sp.) for dye removal.

Remediation of heavy metal(loid) contaminated soil through green nanotechnology

Modern industrialization is progressively degrading soil quality due to heavy metal contamination. Heavy metal (HM) contamination of agricultural soil has gained considerable attention due to its rapidly increasing levels. Nanoparticles (NPs) have unique physicochemical properties that make them effective stress relievers. Material science has recently been emphasizing “green” synthesis as a reliable, environmentally friendly, and sustainable method of synthesizing different kinds of materials, such as alloys, metal oxides, hybrids, and bioinspired materials. Therefore, green synthesis can be viewed as an effective tool to reduce the detrimental effects of the traditional nanoparticle synthesis methods commonly used in laboratories and industries. The review briefly describes the biosynthesis of NPs, the use of nanobiotechnology to remediate heavy metal-contaminated soil, the effect that NPs have on growth and development of plants, the behavior of NPs within plants when exposed to pollutants and the mechanisms used to alleviate HM stress. In addition, a broad overview of the major types of nanomaterials used so far in bioremediation of toxic heavy materials, recent advances regarding HM stress and the possible mechanisms by which NPs and HM interact in the agricultural system are also discussed.

Optimization of the raw materials of biochars for the adsorption of heavy metal ions from aqueous solution

In this paper, the material types were preferentially selected for different kinds of heavy metals, the effect of calcination temperatures on metal adsorption was investigated, and the adsorption mechanism was explored and summarized. The results show that the pseudo-first-order kinetic was better to fit the adsorption of heavy metals. The biomass type and pyrolysis temperature had an effect on the rate at which heavy metals were absorbed. Based on their adsorbed capacity, 350 °C pyrolyzed corn stalk char, 550 °C pyrolyzed peanut shell char, 450 °C pyrolyzed peanut shell char, 450 °C pyrolyzed peanut shell char, and 500 °C pyrolyzed wheat stalk char were shown to be the best adsorbents for Cr₂O₇^2-, Cd²⁺, Cu²⁺, Zn²⁺ and Pb²⁺, respectively. The largest adsorption rate were in the order of Cr⁶⁺ (Cr₂O₇^2-, 0.5380 /min) > Pb²⁺ (0.2276 /min) > Cd²⁺ (0.1354 /min) > Cu²⁺ (0.1273 /min) > Zn²⁺ (0.1000 /min), which might be positively related to the ion radius. Meanwhile, the yield of biomass decreased from 43.9% to 29.0% with the increase of pyrolysis temperature from 350 °C to 550 °C. In addition, the specific surface area and functional groups of the biochar, as well as the ionic radius and initial concentration of heavy metals affect the adsorption rate.

Development of an Autochthonous Microbial Consortium for Enhanced Bioremediation of PAH-Contaminated Soil

The main objectives of this study were to isolate bacteria from soil chronically contaminated with polycyclic aromatic hydrocarbons (PAHs), develop an autochthonous microbial consortium, and evaluate its ability to degrade PAHs in their native contaminated soil. Strains with the best bioremediation potential were selected during the multi-stage isolation process. Moreover, to choose bacteria with the highest bioremediation potential, the presence of PAH-degrading genes (pahE) was confirmed and the following tests were performed: tolerance to heavy metals, antagonistic behavior, phytotoxicity, and antimicrobial susceptibility. In vitro degradation of hydrocarbons led to the reduction of the total PAH content by 93.5% after the first day of incubation and by 99.22% after the eighth day. Bioremediation experiment conducted in situ in the contaminated area resulted in the average reduction of the total PAH concentration by 33.3% after 5 months and by over 72% after 13 months, compared to the concentration recorded before the intervention. Therefore, this study implicates that the development of an autochthonous microbial consortium isolated from long-term PAH-contaminated soil has the potential to enhance the bioremediation process.

Recovery of Rare Earth Elements from Geothermal Fluids through Bacterial Cell Surface Adsorption

The increasing demand for rare earth elements (REEs) in the modern economy motivates the development of novel strategies for cost-effective REE recovery from nontraditional feedstocks. We previously engineered E. coli to express lanthanide binding tags on the cell surface, which increased the REE biosorption capacity and selectivity. Here we examined how REE adsorption by the engineered E. coli is affected by various geochemical factors relevant to geothermal fluids, including total dissolved solids (TDS), temperature, pH, and the presence of specific competing metals. REE biosorption is robust to TDS, with high REE recovery efficiency and selectivity observed with TDS as high as 165,000 ppm. Among several metals tested, U, Al, and Pb were found to be the most competitive, causing >25% reduction in REE biosorption when present at concentrations ∼3- to 11-fold higher than the REEs. Optimal REE biosorption occurred between pH 5-6, and sorption capacity was reduced by ∼65% at pH 2. REE recovery efficiency and selectivity increased as a function of temperature up to ∼70 °C due to the thermodynamic properties of metal complexation on the bacterial surface. Together, these data define the optimal and boundary conditions for biosorption and demonstrate its potential utility for selective REE recovery from geofluids.

Streptomyces cadmiisoli sp. nov., a novel actinomycete isolated from cadmium-contaminated soil

A novel Streptomyces strain, ZFG47T, isolated from a cadmium-contaminated soil sample, was taxonomically studied in detail. Strain ZFG47T formed long, flexuous spiral spore chains consisting of elliptoid spores with spiny surfaces. The cell-wall hydrolysates contained ll-diaminopimelic acid as the diagnostic diamino acid. The major menaquinones consisted of MK-9(H2), MK-9(H4) and MK-9(H8). The major polar lipids contained diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and phosphatidylinositol mannosides. The predominant cellular fatty acids were iso-C16 : 0, C16 : 0 and anteiso-C15 : 0. The 16S rRNA gene sequence-based phylogenetic analysis indicated that this strain belongs to the genus Streptomyces , showing the highest sequence similarity to Streptomyces koyangensis VK-A60T (98.7 %). However, the digital DNA–DNA hybridization value, the average nucleotide identity value and the MLSA evolutionary distance between this strain and S. koyangensis VK-A60T showed that it belonged to a distinct species. Furthermore, the novel isolate could be distinctly differentiated from S. koyangensis VK-A60T by morphological, physiological and biochemical characteristics. On the basis of the evidence from this polyphasic study, it is concluded that strain ZFG47T represents a novel species of the genus Streptomyces , for which the name Streptomyces cadmiisoli sp. nov. is proposed, with strain ZFG47T (CICC 11050T=JCM 32897T) as the type strain.

Sequestering of As(III) and As(V) from wastewater using a novel neem leaves/MnFe2O4 composite biosorbent

An arsenic biosorbent comprising neem leaves (NL) and MnFe2O4 particles was developed and its removal potential was investigated. Physicochemical analysis of the NL/MnFe2O4 composite (MNL) was performed for the Brunauer, Emmett and Teller surface area, Fourier transform infrared spectra (FT-IR), and scanning electron microscopy-Energy-dispersive X-ray (EDX). The following parameters were optimized: pH, biosorbent dose, contact time, temperature, and initial arsenic concentration. The optimum pH values achieved for biosorption of As(III) and As(V) were 7.0 and 4.0, respectively, when the equilibrium time was 110 minutes for both. MNL was found to be efficient with 85.217% and 88.154% biosorption efficiency at a concentration of 50 mg/L of As(III) or As(V) solution, respectively. This was also proved by the FT-IR study of arsenic-loaded biosorbent. For establishing the best suitable correlation for the equilibrium curves exploiting the procedure of the nonlinear regression for curve fitting analysis, isotherm studies were conducted for As(III) and As(V) using 30 isotherm models. The pattern of biosorption fitted well with Brouers-Sotolongo isotherm model for As(III) and Langmuir-Freundlich as well as Sips isotherm models for As(V). Dubinin-Radushkevich (D-R) isotherm studies specified that ion exchange might play a significant role. The influence of various co-existing ions at different concentrations was examined. Desorption study was performed using various concentrations of NaOH solution.

Genome Sequence of Streptomyces exfoliatus DSMZ 41693, a Source of Poly(3-Hydroxyalkanoate)-Degrading Enzymes

Here we report the draft genome sequence of Streptomyces exfoliatus DSMZ 41693, which includes a gene encoding a poly(3-hydroxyoctanoate) depolymerase, an enzyme which can be used for the industrial synthesis of chiral (R)-3-hydroxyalkanoic acids. In addition, the genome carries numerous genes involved in the biosynthesis of secondary metabolites, including polyketides and terpenes.