1
|
Simonetti V, Ravazzolo L, Ruperti B, Quaggiotti S, Castiello U. A system for the study of roots 3D kinematics in hydroponic culture: a study on the oscillatory features of root tip. PLANT METHODS 2024; 20:50. [PMID: 38561757 PMCID: PMC10983651 DOI: 10.1186/s13007-024-01178-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2023] [Accepted: 03/18/2024] [Indexed: 04/04/2024]
Abstract
BACKGROUND The root of a plant is a fundamental organ for the multisensory perception of the environment. Investigating root growth dynamics as a mean of their interaction with the environment is of key importance for improving knowledge in plant behaviour, plant biology and agriculture. To date, it is difficult to study roots movements from a dynamic perspective given that available technologies for root imaging focus mostly on static characterizations, lacking temporal and three-dimensional (3D) spatial information. This paper describes a new system based on time-lapse for the 3D reconstruction and analysis of roots growing in hydroponics. RESULTS The system is based on infrared stereo-cameras acquiring time-lapse images of the roots for 3D reconstruction. The acquisition protocol guarantees the root growth in complete dark while the upper part of the plant grows in normal light conditions. The system extracts the 3D trajectory of the root tip and a set of descriptive features in both the temporal and frequency domains. The system has been used on Zea mays L. (B73) during the first week of growth and shows good inter-reliability between operators with an Intra Class Correlation Coefficient (ICC) > 0.9 for all features extracted. It also showed measurement accuracy with a median difference of < 1 mm between computed and manually measured root length. CONCLUSIONS The system and the protocol presented in this study enable accurate 3D analysis of primary root growth in hydroponics. It can serve as a valuable tool for analysing real-time root responses to environmental stimuli thus improving knowledge on the processes contributing to roots physiological and phenotypic plasticity.
Collapse
Affiliation(s)
| | - Laura Ravazzolo
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), University of Padova, Agripolis, Italy
| | - Benedetto Ruperti
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), University of Padova, Agripolis, Italy
| | - Silvia Quaggiotti
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), University of Padova, Agripolis, Italy
| | - Umberto Castiello
- Department of General Psychology, University of Padova, Padova, Italy
| |
Collapse
|
2
|
Mazzolai B, Tramacere F, Fiorello I, Margheri L. The Bio-Engineering Approach for Plant Investigations and Growing Robots. A Mini-Review. Front Robot AI 2020; 7:573014. [PMID: 33501333 PMCID: PMC7806088 DOI: 10.3389/frobt.2020.573014] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Accepted: 08/18/2020] [Indexed: 12/14/2022] Open
Abstract
It has been 10 years since the publication of the first article looking at plants as a biomechatronic system and as model for robotics. Now, roboticists have started to look at plants differently and consider them as a model in the field of bioinspired robotics. Despite plants have been seen traditionally as passive entities, in reality they are able to grow, move, sense, and communicate. These features make plants an exceptional example of morphological computation - with probably the highest level of adaptability among all living beings. They are a unique model to design robots that can act in- and adapt to- unstructured, extreme, and dynamically changing environments exposed to sudden or long-term events. Although plant-inspired robotics is still a relatively new field, it has triggered the concept of growing robotics: an emerging area in which systems are designed to create their own body, adapt their morphology, and explore different environments. There is a reciprocal interest between biology and robotics: plants represent an excellent source of inspiration for achieving new robotic abilities, and engineering tools can be used to reveal new biological information. This way, a bidirectional biology-robotics strategy provides mutual benefits for both disciplines. This mini-review offers a brief overview of the fundamental aspects related to a bioengineering approach in plant-inspired robotics. It analyses the works in which both biological and engineering aspects have been investigated, and highlights the key elements of plants that have been milestones in the pioneering field of growing robots.
Collapse
Affiliation(s)
- Barbara Mazzolai
- Center for Micro-BioRobotics, Istituto Italiano di Tecnologia, Pontedera, Italy
| | - Francesca Tramacere
- Center for Micro-BioRobotics, Istituto Italiano di Tecnologia, Pontedera, Italy
| | - Isabella Fiorello
- Center for Micro-BioRobotics, Istituto Italiano di Tecnologia, Pontedera, Italy
- The BioRobotics Institute, Scuola Superiore Sant'Anna, Pisa, Italy
| | - Laura Margheri
- Center for Micro-BioRobotics, Istituto Italiano di Tecnologia, Pontedera, Italy
| |
Collapse
|
3
|
Fiorello I, Del Dottore E, Tramacere F, Mazzolai B. Taking inspiration from climbing plants: methodologies and benchmarks-a review. BIOINSPIRATION & BIOMIMETICS 2020; 15:031001. [PMID: 32045368 DOI: 10.1088/1748-3190/ab7416] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
One of the major challenges in robotics and engineering is to develop efficient technological solutions that are able to cope with complex environments and unpredictable constraints. Taking inspiration from natural organisms is a well-known approach to tackling these issues. Climbing plants are an important, yet innovative, source of inspiration due to their ability to adapt to diverse habitats, and can be used as a model for developing robots and smart devices for exploration and monitoring, as well as for search and rescue operations. This review reports the main methodologies and approaches used by scientists to investigate and extract the features of climbing plants that are relevant to the artificial world in terms of adaptation, movement, and behaviour, and it summarizes the current available climbing plant-inspired engineering solutions.
Collapse
Affiliation(s)
- Isabella Fiorello
- The Biorobotics Institute, Scuola Superiore Sant'Anna, Pisa, Italy. Center for Micro-Biorobotics, Istituto Italiano di Tecnologia, Pontedera, Italy
| | | | | | | |
Collapse
|
4
|
Mishra AK, Tramacere F, Guarino R, Pugno NM, Mazzolai B. A study on plant root apex morphology as a model for soft robots moving in soil. PLoS One 2018; 13:e0197411. [PMID: 29874267 PMCID: PMC5991344 DOI: 10.1371/journal.pone.0197411] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2018] [Accepted: 05/01/2018] [Indexed: 11/27/2022] Open
Abstract
Plants use many strategies to move efficiently in soil, such as growth from the tip, tropic movements, and morphological changes. In this paper, we propose a method to translate morphological features of Zea mays roots into a new design of soft robots that will be able to move in soil. The method relies on image processing and curve fitting techniques to extract the profile of Z. mays primary root. We implemented an analytic translation of the root profile in a 3D model (CAD) to fabricate root-like probes by means of 3D printing technology. Then, we carried out a comparative analysis among the artificial root-like probe and probes with different tip shapes (cylindrical, conical, elliptical, and parabolic) and diameters (11, 9, 7, 5, and 3 mm). The results showed that the energy consumption and the penetration force of the bioinspired probe are better with respect to the other shapes for all the diameters of the developed probes. For 100 mm of penetration depth and 7 mm of probe diameter, the energy consumption of the bioinspired probe is 89% lesser with respect to the cylindrical probe and 26% lesser with respect to the conical probe. The penetration performance of the considered tip shapes was evaluated also by means of numerical simulations, obtaining a good agreement with the experimental results. Additional investigations on plant root morphology, movement strategies, and material properties can allow the development of innovative bioinspired solutions exploitable in challenging environments. This research can bring to breakthrough scenarios in different fields, such as exploration tasks, environmental monitoring, geotechnical studies, and medical applications.
Collapse
Affiliation(s)
- Anand Kumar Mishra
- Center for Micro-BioRobotics, Istituto Italiano di Tecnologia, Pontedera, Italy
- The BioRobotics Institute, Scuola Superiore Sant’Anna, Pontedera, Italy
- * E-mail: (AKM); (FT); (BM)
| | - Francesca Tramacere
- Center for Micro-BioRobotics, Istituto Italiano di Tecnologia, Pontedera, Italy
- * E-mail: (AKM); (FT); (BM)
| | - Roberto Guarino
- Laboratory of Bio-Inspired & Graphene Nanomechanics, Department of Civil, Environmental and Mechanical Engineering, University of Trento, Trento, Italy
| | - Nicola Maria Pugno
- Laboratory of Bio-Inspired & Graphene Nanomechanics, Department of Civil, Environmental and Mechanical Engineering, University of Trento, Trento, Italy
- Ket Lab, Edoardo Amaldi Foundation, Italian Space Agency, Rome, Italy
- School of Engineering and Materials Science, Queen Mary University of London, London, United Kingdom
| | - Barbara Mazzolai
- Center for Micro-BioRobotics, Istituto Italiano di Tecnologia, Pontedera, Italy
- * E-mail: (AKM); (FT); (BM)
| |
Collapse
|
5
|
Kim HJ, Kobayashi A, Fujii N, Miyazawa Y, Takahashi H. Gravitropic response and circumnutation in pea (Pisum sativum) seedling roots. PHYSIOLOGIA PLANTARUM 2016; 157:108-18. [PMID: 26565659 DOI: 10.1111/ppl.12406] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Revised: 10/03/2015] [Accepted: 10/05/2015] [Indexed: 06/05/2023]
Abstract
Plant circumnutation is a helical movement of growing organs such as shoots and roots. Gravitropic response is hypothesized to act as an external oscillator in shoot circumnutation, although this is subject to debate. The relationship between circumnutational movement and gravitropic response in roots remains unknown. In this study, we analyzed circumnutation of agravitropic roots using the ageotropum pea (Pisum sativum) mutant, and compared it with that of wild-type (cv. Alaska) pea roots. We further examined the relationship of gravitropic response to circumnutation of Alaska seedling roots by removing the gravisensing tissue (the root cap) and by treating the roots with auxin transport inhibitors. Alaska roots displayed circumnutational movements with a period of approximately 150 min, whereas ageotropum roots did not exhibit distinct circumnutational movement. Removal of the root cap in Alaska roots reduced gravitropic response and circumnutational movements. Treatment of Alaska roots with auxin transport inhibitors, 2,3,5-triiodobenzoic acid (TIBA) and N-(1-naphthyl)phthalamic acid (NPA), dramatically reduced gravitropic response and circumnutational movements. These results suggest that a gravity-regulated auxin transport is involved in circumnutation of pea seedling roots.
Collapse
Affiliation(s)
- Hye-jeong Kim
- Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan
| | - Akie Kobayashi
- Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan
| | - Nobuharu Fujii
- Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan
| | - Yutaka Miyazawa
- Department of Biology, Faculty of Science, Yamagata University, Yamagata, 990-8560, Japan
| | - Hideyuki Takahashi
- Graduate School of Life Sciences, Tohoku University, Sendai, 980-8577, Japan
| |
Collapse
|
6
|
Popova L, Tonazzini A, Di Michele F, Russino A, Sadeghi A, Sinibaldi E, Mazzolai B. Unveiling the kinematics of the avoidance response in maize (Zea mays) primary roots. Biologia (Bratisl) 2016. [DOI: 10.1515/biolog-2016-0022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
7
|
Sinibaldi E, Puleo GL, Mattioli F, Mattoli V, Di Michele F, Beccai L, Tramacere F, Mancuso S, Mazzolai B. Osmotic actuation modelling for innovative biorobotic solutions inspired by the plant kingdom. BIOINSPIRATION & BIOMIMETICS 2013; 8:025002. [PMID: 23648821 DOI: 10.1088/1748-3182/8/2/025002] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Osmotic-driven plant movements are widely recognized as impressive examples of energy efficiency and low power consumption. These aspects motivate the interest in developing an original biomimetic concept of new actuators based on the osmotic principle exploited by plants. This study takes a preliminary step in this direction, by modelling the dynamic behaviour of two exemplificative yet relevant implementations of an osmotic actuator concept. In more detail, the considered implementations differ from each other in the way actuation energy storage is achieved (through a piston displacement in the former case, through membrane bulging in the latter). The dynamic problem is analytically solved for both cases; scaling laws for the actuation figures of merit (namely characteristic time, maximum force, maximum power, power density, cumulated work and energy density) as a function of model parameters are obtained for the bulging implementation. Starting from such performance indicators, a preliminary dimensioning of the envisaged osmotic actuator is exemplified, based on design targets/constraints (such as characteristic time and/or maximum force). Moreover, model assumptions and limitations are discussed towards effective prototypical development and experimental testing. Nonetheless, this study takes the first step towards the design of new actuators based on the natural osmotic principle, which holds potential for disruptive innovation in many fields, including biorobotics and ICT solutions.
Collapse
Affiliation(s)
- E Sinibaldi
- Center for Micro-BioRobotics@SSSA, Istituto Italiano di Tecnologia, Viale Rinaldo Piaggio 34, I-56025 Pontedera, Italy
| | | | | | | | | | | | | | | | | |
Collapse
|
8
|
Russino A, Ascrizzi A, Popova L, Tonazzini A, Mancuso S, Mazzolai B. A novel tracking tool for the analysis of plant-root tip movements. BIOINSPIRATION & BIOMIMETICS 2013; 8:025004. [PMID: 23648942 DOI: 10.1088/1748-3182/8/2/025004] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
The growth process of roots consists of many activities, such as exploring the soil volume, mining minerals, avoiding obstacles and taking up water to fulfil the plant's primary functions, that are performed differently, depending on environmental conditions. Root movements are strictly related to a root decision strategy, which helps plants to survive under stressful conditions by optimizing energy consumption. In this work, we present a novel image-analysis tool to study the kinematics of the root tip (apex), named analyser for root tip tracks (ARTT). The software implementation combines a segmentation algorithm with additional software imaging filters in order to realize a 2D tip detection. The resulting paths, or tracks, arise from the sampled tip positions through the acquired images during the growth. ARTT allows work with no markers and deals autonomously with new emerging root tips, as well as handling a massive number of data relying on minimum user interaction. Consequently, ARTT can be used for a wide range of applications and for the study of kinematics in different plant species. In particular, the study of the root growth and behaviour could lead to the definition of novel principles for the penetration and/or control paradigms for soil exploration and monitoring tasks. The software capabilities were demonstrated by experimental trials performed with Zea mays and Oryza sativa.
Collapse
Affiliation(s)
- A Russino
- The BioRobotics Institute, Scuola Superiore Sant'Anna SSSA, I-56025 Pontedera, PI, Italy
| | | | | | | | | | | |
Collapse
|