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Bordes L, Gonzales JL, Vreman S, Venema S, Portier N, Germeraad EA, van der Poel WHM, Beerens N. In Ovo Models to Predict Virulence of Highly Pathogenic Avian Influenza H5-Viruses for Chickens and Ducks. Viruses 2024; 16:563. [PMID: 38675905 PMCID: PMC11053719 DOI: 10.3390/v16040563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 03/29/2024] [Accepted: 04/02/2024] [Indexed: 04/28/2024] Open
Abstract
Highly pathogenic avian influenza (HPAI) H5-viruses are circulating in wild birds and are repeatedly introduced to poultry causing outbreaks in the Netherlands since 2014. The largest epizootic ever recorded in Europe was caused by HPAI H5N1 clade 2.3.4.4b viruses in the period 2021-2022. The recent H5-clade 2.3.4.4 viruses were found to differ in their virulence for chickens and ducks. Viruses causing only mild disease may remain undetected, increasing the risk of virus spread to other farms, wild birds and mammals. We developed in ovo models to determine the virulence of HPAI viruses for chickens and ducks, which are fast and have low costs. The virulence of five contemporary H5-viruses was compared studying replication rate, average time to death and virus spread in the embryo. Remarkable differences in virulence were observed between H5-viruses and between poultry species. The H5N1-2021 virus was found to have a fast replication rate in both the chicken and duck in ovo models, but a slower systemic virus dissemination compared to three other H5-clade 2.3.4.4b viruses. The results show the potential of in ovo models to quickly determine the virulence of novel HPAI viruses, and study potential virulence factors which can help to better guide the surveillance in poultry.
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Affiliation(s)
- Luca Bordes
- Department of Virology, Wageningen Bioveterinary Research, 8221 RA Lelystad, The Netherlands; (S.V.); (S.V.); (N.P.); (N.B.)
| | - José L. Gonzales
- Department of Epidemiology, Bioinformatics & Animal Models, Wageningen Bioveterinary Research, 8221 RA Lelystad, The Netherlands;
| | - Sandra Vreman
- Department of Virology, Wageningen Bioveterinary Research, 8221 RA Lelystad, The Netherlands; (S.V.); (S.V.); (N.P.); (N.B.)
| | - Sandra Venema
- Department of Virology, Wageningen Bioveterinary Research, 8221 RA Lelystad, The Netherlands; (S.V.); (S.V.); (N.P.); (N.B.)
| | - Nadia Portier
- Department of Virology, Wageningen Bioveterinary Research, 8221 RA Lelystad, The Netherlands; (S.V.); (S.V.); (N.P.); (N.B.)
| | - Evelien A. Germeraad
- Department of Virology, Wageningen Bioveterinary Research, 8221 RA Lelystad, The Netherlands; (S.V.); (S.V.); (N.P.); (N.B.)
| | - Wim H. M. van der Poel
- Department of Virology, Wageningen Bioveterinary Research, 8221 RA Lelystad, The Netherlands; (S.V.); (S.V.); (N.P.); (N.B.)
| | - Nancy Beerens
- Department of Virology, Wageningen Bioveterinary Research, 8221 RA Lelystad, The Netherlands; (S.V.); (S.V.); (N.P.); (N.B.)
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Djurdjević B, Polaček V, Pajić M, Petrović T, Vučićević I, Vidanović D, Aleksić-Kovačević S. Highly Pathogenic Avian Influenza H5N8 Outbreak in Backyard Chickens in Serbia. Animals (Basel) 2023; 13:ani13040700. [PMID: 36830487 PMCID: PMC9952722 DOI: 10.3390/ani13040700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Revised: 01/16/2023] [Accepted: 02/13/2023] [Indexed: 02/19/2023] Open
Abstract
In winter 2016/2017, the highly pathogenic avian influenza virus H5N8 was detected in backyard poultry in Serbia for the first time. The second HPAI outbreak case in backyard poultry was reported in 2022, caused by subtype H5N1. This is the first study that documents the laboratory identification and pathology associated with highly pathogenic avian influenza in poultry in Serbia during the first and second introduction waves. In both cases, the diagnosis was based on real-time reverse transcriptase PCR. The most common observed lesions included subepicardial hemorrhages, congestion and hemorrhages in the lungs, and petechial hemorrhages in coelomic and epicardial adipose tissue. Histologically, the observed lesions were mostly nonpurulent encephalitis accompanied by encephalomalacia, multifocal necrosis in the spleen, pancreas, and kidneys, pulmonary congestion, and myocardial and pulmonary hemorrhages. In H5N8-infected chickens, immunohistochemical examination revealed strong positive IHC staining in the brain and lungs. Following these outbreaks, strict control measures were implemented on farms and backyard holdings to prevent the occurrence and spread of the disease. Extensive surveillance of birds for avian influenza virus did not detect any additional cases in poultry. These outbreaks highlight the importance of a rapid detection and response system in order to quickly suppress outbreaks.
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Affiliation(s)
- Biljana Djurdjević
- Department of Epizootiology, Clinical diagnostics and DDD, Scientific Veterinary Institute “Novi Sad”, 21000 Novi Sad, Serbia
- Correspondence:
| | - Vladimir Polaček
- Department of Epizootiology, Clinical diagnostics and DDD, Scientific Veterinary Institute “Novi Sad”, 21000 Novi Sad, Serbia
| | - Marko Pajić
- Department of Epizootiology, Clinical diagnostics and DDD, Scientific Veterinary Institute “Novi Sad”, 21000 Novi Sad, Serbia
| | - Tamaš Petrović
- Department of Virology, Scientific Veterinary Institute “Novi Sad”, 21000 Novi Sad, Serbia
| | - Ivana Vučićević
- Department of Pathology, Faculty of Veterinary Medicine, University of Belgrade, 11080 Belgrade, Serbia
| | - Dejan Vidanović
- Veterinary Specialized Institute Kraljevo, 36000 Kraljevo, Serbia
| | - Sanja Aleksić-Kovačević
- Department of Pathology, Faculty of Veterinary Medicine, University of Belgrade, 11080 Belgrade, Serbia
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Emergence of Highly Pathogenic Avian Influenza A Virus (H5N1) of Clade 2.3.4.4b in Egypt, 2021-2022. Pathogens 2023; 12:pathogens12010090. [PMID: 36678438 PMCID: PMC9863303 DOI: 10.3390/pathogens12010090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 12/31/2022] [Accepted: 01/04/2023] [Indexed: 01/06/2023] Open
Abstract
Wild migratory birds have the capability to spread avian influenza virus (AIV) over long distances as well as transmit the virus to domestic birds. In this study, swab and tissue samples were obtained from 190 migratory birds during close surveillance in Egypt in response to the recent outbreaks of the highly pathogenic avian influenza (HPAI) H5N1 virus. The collected samples were tested for a variety of AIV subtypes (H5N1, H9N2, H5N8, and H6N2) as well as other pathogens such as NDV, IBV, ILT, IBDV, and WNV. Among all of the tested samples, the HPAI H5N1 virus was found in six samples; the other samples were found to be negative for all of the tested pathogens. The Egyptian HPAI H5N1 strains shared genetic traits with the HPAI H5N1 strains that are currently being reported in Europe, North America, Asia, and Africa in 2021-2022. Whole genome sequencing revealed markers associated with mammalian adaption and virulence traits among different gene segments, similar to those found in HPAI H5N1 strains detected in Europe and Africa. The detection of the HPAI H5N1 strain of clade 2.3.4.4b in wild birds in Egypt underlines the risk of the introduction of this strain into the local poultry population. Hence, there is reason to be vigilant and continue epidemiological and molecular monitoring of the AIV in close proximity to the domestic-wild bird interface.
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Khalefa HS, Ahmed ZS, Abdel-Kader F, Ismail EM, Elshafiee EA. Sequencing and phylogenetic analysis of the stn gene of Salmonella species isolated from different environmental sources at Lake Qarun protectorate: The role of migratory birds and public health importance. Vet World 2021; 14:2764-2772. [PMID: 34903938 PMCID: PMC8654765 DOI: 10.14202/vetworld.2021.2764-2772] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Accepted: 09/13/2021] [Indexed: 11/16/2022] Open
Abstract
Background and Aim: Salmonella causes most foodborne bacterial illnesses worldwide. It is found in various hosts, including pets, farm animals, and wild animals, as well as the environment. This study aimed to examine the epidemiological relationship between Salmonella isolates from aquatic environments and those from other avian hosts. Materials and Methods: The study examined 12 water samples, 210 aquatic animals, and 45 migratory aquatic bird samples collected from the protected area of Lake Qarun in El-Fayoum Governorate, Egypt, during migration seasons from different waterfowl migration areas (from October 2018 to January 2019). In addition, 45 fecal samples from domestic chickens were collected from the same geographic location from poultry farms. Bacteriological examination and polymerase chain reaction assay of two virulence genes (i.e., invA and stn) were performed to isolate and identify Salmonella. Results: Salmonella was isolated from 58.3% (7/12) of Lake Qarun water samples, 13.3% (6/45) of migratory waterfowl, 6.6% of (3/45) of chickens (Gallus gallus domesticus), and 4.3% (3/70) of fish and pooled brine shrimp. In migratory aquatic bird species that were sampled, Salmonella were isolated from 23.1% (3/13) of Eurasian coot (Fulica atra), 12.5%, (1/8) of green-winged teal (Anas cardolinesis), 10% (2/20) of northern shoveler (Spatula clypeata), and 0% (0/4) of mallard duck (Anas platyrhynchos). In 35 Tilapia, Salmonella was isolated by (8.6%) 5.7% of external surfaces, 2.85% from the intestine, and 0% from the muscle. No Salmonella was isolated from the 175 brine shrimp samples. Phylogenetic analysis using the stn genes of Salmonella isolated from the aquatic environment, migratory aquatic birds, and chicken showed a strong association between these isolates. In addition, a higher nucleotide identity percentage was observed between the sequences recovered from migratory aquatic birds and Lake Qarun water samples. Conclusion: Salmonella distribution was confirmed through migratory aquatic birds, based on our phylogeny tree analysis, Salmonella considered a likely carrier of zoonotic bacterial pathogens. Furthermore, the close relationship between chicken and fish sequences highlights the scenarios of using chicken manure in fish farms and its public health implications. The presence of Salmonella in different environmental sources spotlights the urgent need to control and break down its epidemiological cycle.
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Affiliation(s)
- Hanan S Khalefa
- Department of Veterinary Hygiene and Management, Faculty of Veterinary Medicine, Cairo University, Giza 12211, Egypt
| | - Zeinab S Ahmed
- Department of Zoonoses, Faculty of Veterinary Medicine, Cairo University, Giza 12211, Egypt
| | - Fatma Abdel-Kader
- Department of Zoonoses, Faculty of Veterinary Medicine, Cairo University, Giza 12211, Egypt
| | - Eman M Ismail
- Department of Veterinary Hygiene and Management, Faculty of Veterinary Medicine, Cairo University, Giza 12211, Egypt
| | - Esraa A Elshafiee
- Department of Zoonoses, Faculty of Veterinary Medicine, Cairo University, Giza 12211, Egypt
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Venkatesh D, Brouwer A, Goujgoulova G, Ellis R, Seekings J, Brown IH, Lewis NS. Regional Transmission and Reassortment of 2.3.4.4b Highly Pathogenic Avian Influenza (HPAI) Viruses in Bulgarian Poultry 2017/18. Viruses 2020; 12:v12060605. [PMID: 32492965 PMCID: PMC7354578 DOI: 10.3390/v12060605] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Revised: 05/26/2020] [Accepted: 05/28/2020] [Indexed: 11/20/2022] Open
Abstract
Between 2017 and 2018, several farms across Bulgaria reported outbreaks of H5 highly-pathogenic avian influenza (HPAI) viruses. In this study we used genomic and traditional epidemiological analyses to trace the origin and subsequent spread of these outbreaks within Bulgaria. Both methods indicate two separate incursions, one restricted to the northeastern region of Dobrich, and another largely restricted to Central and Eastern Bulgaria including places such as Plovdiv, Sliven and Stara Zagora, as well as one virus from the Western region of Vidin. Both outbreaks likely originate from different European 2.3.4.4b virus ancestors circulating in 2017. The viruses were likely introduced by wild birds or poultry trade links in 2017 and have continued to circulate, but due to lack of contemporaneous sampling and sequences from wild bird viruses in Bulgaria, the precise route and timing of introduction cannot be determined. Analysis of whole genomes indicates a complete lack of reassortment in all segments but the matrix protein gene (MP), which presents as multiple smaller clusters associated with different European 2.3.4.4b viruses. Ancestral reconstruction of host states of the hemagglutinin (HA) gene of viruses involved in the outbreaks suggests that transmission is driven by domestic ducks into galliform poultry. Thus, according to present evidence, we suggest the surveillance of domestic ducks as they are an epidemiologically relevant species for subclinical infection. Monitoring the spread due to movement between farms within regions and links to poultry production systems in European countries can help to predict and prevent future outbreaks. The 2.3.4.4b lineage which caused the largest recorded poultry epidemic in Europe continues to circulate, and the risk of further transmission by wild birds during migration remains.
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Affiliation(s)
- Divya Venkatesh
- Department of Pathobiology and Population Sciences, Royal Veterinary College, Hatfield, Hertfordshire AL9 7TA, UK;
- Correspondence:
| | - Adam Brouwer
- OIE/FAO/ International Reference Laboratory for avian influenza, swine influenza and Newcastle Disease, Animal and Plant Health Agency (APHA), Weybridge, Addlestone, Surrey KT15 3NB, UK; (A.B.); (J.S.); (I.H.B.)
| | - Gabriela Goujgoulova
- National Diagnostic Research Veterinary Medical Institute, 1231 Sofia, Bulgaria;
| | - Richard Ellis
- Surveillance and Laboratory Services Department, Animal and Plant Health Agency (APHA), Weybridge, Addlestone, Surrey KT15 3NB, UK;
| | - James Seekings
- OIE/FAO/ International Reference Laboratory for avian influenza, swine influenza and Newcastle Disease, Animal and Plant Health Agency (APHA), Weybridge, Addlestone, Surrey KT15 3NB, UK; (A.B.); (J.S.); (I.H.B.)
- Virology Department, Animal and Plant Health Agency (APHA), Weybridge, Addlestone, Surrey KT15 3NB, UK
| | - Ian H. Brown
- OIE/FAO/ International Reference Laboratory for avian influenza, swine influenza and Newcastle Disease, Animal and Plant Health Agency (APHA), Weybridge, Addlestone, Surrey KT15 3NB, UK; (A.B.); (J.S.); (I.H.B.)
| | - Nicola S. Lewis
- Department of Pathobiology and Population Sciences, Royal Veterinary College, Hatfield, Hertfordshire AL9 7TA, UK;
- OIE/FAO/ International Reference Laboratory for avian influenza, swine influenza and Newcastle Disease, Animal and Plant Health Agency (APHA), Weybridge, Addlestone, Surrey KT15 3NB, UK; (A.B.); (J.S.); (I.H.B.)
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6
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van der Kolk JH. Role for migratory domestic poultry and/or wild birds in the global spread of avian influenza? Vet Q 2019; 39:161-167. [PMID: 31752591 PMCID: PMC6913625 DOI: 10.1080/01652176.2019.1697013] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Accepted: 11/20/2019] [Indexed: 12/29/2022] Open
Affiliation(s)
- Johannes H. van der Kolk
- Swiss Institute for Equine Medicine (ISME), Vetsuisse Faculty,
University of Bern, Bern, Switzerland
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Mulatti P, Fusaro A, Scolamacchia F, Zecchin B, Azzolini A, Zamperin G, Terregino C, Cunial G, Monne I, Marangon S. Integration of genetic and epidemiological data to infer H5N8 HPAI virus transmission dynamics during the 2016-2017 epidemic in Italy. Sci Rep 2018; 8:18037. [PMID: 30575785 PMCID: PMC6303474 DOI: 10.1038/s41598-018-36892-1] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2018] [Accepted: 11/24/2018] [Indexed: 12/30/2022] Open
Abstract
Between October 2016 and December 2017, several European Countries had been involved in a massive Highly Pathogenic Avian Influenza (HPAI) epidemic sustained by H5N8 subtype virus. Starting on December 2016, also Italy was affected by H5N8 HPAI virus, with cases occurring in two epidemic waves: the first between December 2016 and May 2017, and the second in July-December 2017. Eighty-three outbreaks were recorded in poultry, 67 of which (80.72%) occurring in the second wave. A total of 14 cases were reported in wild birds. Epidemiological information and genetic analyses were conjointly used to get insight on the spread dynamics. Analyses indicated multiple introductions from wild birds to the poultry sector in the first epidemic wave, and noteworthy lateral spread from October 2017 in a limited geographical area with high poultry densities. Turkeys, layers and backyards were the mainly affected types of poultry production. Two genetic sub-groups were detected in the second wave in non-overlapping geographical areas, leading to speculate on the involvement of different wild bird populations. The integration of epidemiological data and genetic analyses allowed to unravel the transmission dynamics of H5N8 virus in Italy, and could be exploited to timely support in implementing tailored control measures.
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Affiliation(s)
- P Mulatti
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, (Padua), Italy.
| | - A Fusaro
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, (Padua), Italy
| | - F Scolamacchia
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, (Padua), Italy
| | - B Zecchin
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, (Padua), Italy
| | - A Azzolini
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, (Padua), Italy
| | - G Zamperin
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, (Padua), Italy
| | - C Terregino
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, (Padua), Italy
| | - G Cunial
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, (Padua), Italy
| | - I Monne
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, (Padua), Italy
| | - S Marangon
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, (Padua), Italy
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8
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Brown I, Kuiken T, Mulatti P, Smietanka K, Staubach C, Stroud D, Therkildsen OR, Willeberg P, Baldinelli F, Verdonck F, Adlhoch C. Avian influenza overview September - November 2017. EFSA J 2017; 15:e05141. [PMID: 32625395 PMCID: PMC7010192 DOI: 10.2903/j.efsa.2017.5141] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
Between 1 September and 15 November 2017, 48 A(H5N8) highly pathogenic avian influenza (HPAI) outbreaks in poultry holdings and 9 H5 HPAI wild bird events were reported within Europe. A second epidemic HPAI A(H5N8) wave started in Italy on the third week of July and is still ongoing on 15 November 2017. The Italian epidemiological investigations indicated that sharing of vehicles, sharing of personnel and close proximity to infected holdings are the more likely sources of secondary spread in a densely populated poultry area. Despite the ongoing human exposures to infected poultry during the outbreaks, no transmission to humans has been identified in the EU. The report includes an update of the list of wild bird target species for passive surveillance activities that is based on reported AI‐infected wild birds since 2006. The purpose of this list is to provide information on which bird species to focus in order to achieve the most effective testing of dead birds for detection of H5 HPAI viruses. Monitoring the avian influenza situation in other continents revealed the same risks as in the previous report (October 2016‐August 2017): the recent human case of HPAI A(H5N6) in China underlines the continuing threat of this avian influenza virus to human health and possible introduction via migratory wild birds into Europe. Close monitoring is required of the situation in Africa with regards to HPAI of the subtypes A(H5N1) and A(H5N8), given the rapidity of the evolution and the uncertainty on the geographical distribution of these viruses. Interactions between EFSA and member states have taken place to initiate discussions on improving the quality of data collections and to find a step‐wise approach to exchange relevant (denominator) data without causing an additional resource burden.
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9
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Velkers FC, Blokhuis SJ, Veldhuis Kroeze EJB, Burt SA. The role of rodents in avian influenza outbreaks in poultry farms: a review. Vet Q 2017; 37:182-194. [DOI: 10.1080/01652176.2017.1325537] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
Affiliation(s)
- Francisca C. Velkers
- Department of Farm Animal Health – Epidemiology, Infectiology and Health, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | - Simon J. Blokhuis
- Department of Farm Animal Health – Epidemiology, Infectiology and Health, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | | | - Sara A. Burt
- Institute for Risk Assessment Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
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10
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Wille M, Lindqvist K, Muradrasoli S, Olsen B, Järhult JD. Urbanization and the dynamics of RNA viruses in Mallards (Anas platyrhynchos). INFECTION GENETICS AND EVOLUTION 2017; 51:89-97. [PMID: 28323070 PMCID: PMC7106234 DOI: 10.1016/j.meegid.2017.03.019] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2016] [Revised: 03/08/2017] [Accepted: 03/16/2017] [Indexed: 11/26/2022]
Abstract
Urbanization is intensifying worldwide, and affects the epidemiology of infectious diseases. However, the effect of urbanization on natural host-pathogen systems remains poorly understood. Urban ducks occupy an interesting niche in that they directly interact with both humans and wild migratory birds, and either directly or indirectly with food production birds. Here we have collected samples from Mallards (Anas platyrhynchos) residing in a pond in central Uppsala, Sweden, from January 2013 to January 2014. This artificial pond is kept ice-free during the winter months, and is a popular location where the ducks are fed, resulting in a resident population of ducks year-round. Nine hundred and seventy seven (977) fecal samples were screened for RNA viruses including: influenza A virus (IAV), avian paramyxovirus 1, avian coronavirus (CoV), and avian astrovirus (AstroV). This intra-annual dataset illustrates that these RNA viruses exhibit similar annual patterns to IAV, suggesting similar ecological factors are at play. Furthermore, in comparison to wild ducks, autumnal prevalence of IAV and CoV are lower in this urban population. We also demonstrate that AstroV might be a larger burden to urban ducks than IAV, and should be better assessed to demonstrate the degree to which wild birds contribute to the epidemiology of these viruses. The presence of economically relevant viruses in urban Mallards highlights the importance of elucidating the ecology of wildlife pathogens in urban environments, which will become increasingly important for managing disease risks to wildlife, food production animals, and humans. Influenza virus, coronavirus, paramyxovirus, astrovirus detected in urban Mallards Viruses share intra-annual dynamics, with autumnal prevalence peak Avian astrovirus had the highest prevalence in urban Mallards. Prevalence of influenza and coronavirus lower in urban versus to migrating Mallard
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Affiliation(s)
- Michelle Wille
- Zoonosis Science Center, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
| | - Kristine Lindqvist
- Zoonosis Science Center, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden
| | - Shaman Muradrasoli
- Zoonosis Science Center, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden; Department of Laboratory Medicine, Division of Clinical Microbiology, Karolinska Institute, Karolinska University Hospital, SE-14186 Huddinge, Sweden
| | - Björn Olsen
- Zoonosis Science Center, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden; Section for Infectious Diseases, Department of Medical Sciences, Uppsala University, Uppsala, Sweden
| | - Josef D Järhult
- Zoonosis Science Center, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden; Section for Infectious Diseases, Department of Medical Sciences, Uppsala University, Uppsala, Sweden
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11
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Role for migratory wild birds in the global spread of avian influenza H5N8. Science 2016; 354:213-217. [PMID: 27738169 PMCID: PMC5972003 DOI: 10.1126/science.aaf8852] [Citation(s) in RCA: 303] [Impact Index Per Article: 37.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2016] [Accepted: 09/07/2016] [Indexed: 01/21/2023]
Abstract
Avian influenza viruses affect both poultry production and public health. A subtype H5N8 (clade 2.3.4.4) virus, following an outbreak in poultry in South Korea in January 2014, rapidly spread worldwide in 2014-2015. Our analysis of H5N8 viral sequences, epidemiological investigations, waterfowl migration, and poultry trade showed that long-distance migratory birds can play a major role in the global spread of avian influenza viruses. Further, we found that the hemagglutinin of clade 2.3.4.4 virus was remarkably promiscuous, creating reassortants with multiple neuraminidase subtypes. Improving our understanding of the circumpolar circulation of avian influenza viruses in migratory waterfowl will help to provide early warning of threats from avian influenza to poultry, and potentially human, health.
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12
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Mok CKP, Da Guan W, Liu XQ, Lamers MM, Li XB, Wang M, Zhang TJS, Zhang QL, Li ZT, Huang JC, Lin JY, Zhang YH, Zhao P, Lee HHY, Chen L, Li YM, Peiris JSM, Chen RC, Zhong NS, Yang ZF. Genetic Characterization of Highly Pathogenic Avian Influenza A(H5N6) Virus, Guangdong, China. Emerg Infect Dis 2016; 21:2268-71. [PMID: 26584075 PMCID: PMC4672456 DOI: 10.3201/eid2112.150809] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
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13
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Núñez A, Brookes SM, Reid SM, Garcia-Rueda C, Hicks DJ, Seekings JM, Spencer YI, Brown IH. Highly Pathogenic Avian Influenza H5N8 Clade 2.3.4.4 Virus: Equivocal Pathogenicity and Implications for Surveillance Following Natural Infection in Breeder Ducks in the United Kingdom. Transbound Emerg Dis 2015; 63:5-9. [DOI: 10.1111/tbed.12442] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2015] [Indexed: 11/28/2022]
Affiliation(s)
- A. Núñez
- Pathology Department; Animal and Plant Health Agency; Addlestone Surrey UK
| | - S. M. Brookes
- Avian Virology; Animal and Plant Health Agency; Addlestone Surrey UK
| | - S. M. Reid
- Avian Virology; Animal and Plant Health Agency; Addlestone Surrey UK
| | - C. Garcia-Rueda
- Pathology Department; Animal and Plant Health Agency; Addlestone Surrey UK
| | - D. J. Hicks
- Pathology Department; Animal and Plant Health Agency; Addlestone Surrey UK
| | - J. M. Seekings
- Avian Virology; Animal and Plant Health Agency; Addlestone Surrey UK
| | - Y. I. Spencer
- Pathology Department; Animal and Plant Health Agency; Addlestone Surrey UK
| | - I. H. Brown
- Avian Virology; Animal and Plant Health Agency; Addlestone Surrey UK
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Bouwstra RJ, Koch G, Heutink R, Harders F, van der Spek A, Elbers AR, Bossers A. Phylogenetic analysis of highly pathogenic avian influenza A(H5N8) virus outbreak strains provides evidence for four separate introductions and one between-poultry farm transmission in the Netherlands, November 2014. ACTA ACUST UNITED AC 2015; 20. [PMID: 26159311 DOI: 10.2807/1560-7917.es2015.20.26.21174] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Phylogenetic analysis of highly pathogenic avian influenza A(H5N8) virus strains causing outbreaks in Dutch poultry farms in 2014 provides evidence for separate introduction of the virus in four outbreaks in farms located 16-112 km from each other and for between-farm transmission between the third and fourth outbreak in farms located 550 m from each other. In addition, the analysis showed that all European and two Japanese H5N8 virus strains are very closely related and seem to originate from a calculated common ancestor, which arose between July and September 2014. Our findings suggest that the Dutch outbreak virus strain 'Ter Aar' and the first German outbreak strain from 2014 shared a common ancestor. In addition, the data indicate that the Dutch outbreak viruses descended from an H5N8 virus that circulated around 2009 in Asia, possibly China, and subsequently spread to South Korea and Japan and finally also to Europe. Evolution of the virus seemed to follow a parallel track in Japan and Europe, which supports the hypothesis that H5N8 virus was exchanged between migratory wild waterfowl at their breeding grounds in Siberia and from there was carried by migrating waterfowl to Europe.
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Affiliation(s)
- R J Bouwstra
- Central Veterinary Institute part of Wageningen UR, Lelystad, the Netherlands
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15
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Wild waterfowl migration and domestic duck density shape the epidemiology of highly pathogenic H5N8 influenza in the Republic of Korea. INFECTION GENETICS AND EVOLUTION 2015; 34:267-77. [PMID: 26079277 PMCID: PMC4539883 DOI: 10.1016/j.meegid.2015.06.014] [Citation(s) in RCA: 68] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2015] [Revised: 06/10/2015] [Accepted: 06/11/2015] [Indexed: 11/23/2022]
Abstract
Phylogeographic analyses of H5N8, including 49 new sequences from South Korea. H5N8 movement was mostly among areas dense in wild and domestic ducks. New viral introductions to South Korea occurred at time of wild bird migration. H5N8 epidemiology is shaped by wild waterfowl migration and domestic duck density. H5N8 may have entered Europe at least twice, and Asia at least three times.
Highly pathogenic avian influenza (HPAI) viruses threaten human and animal health yet their emergence is poorly understood, partly because sampling of the HPAI Asian-origin H5N1 lineage immediately after its identification in 1996 was comparatively sparse. The discovery of a novel H5N8 virus in 2013 provides a new opportunity to investigate HPAI emergence in greater detail. Here we investigate the origin and transmission of H5N8 in the Republic of Korea, the second country to report the new strain. We reconstruct viral spread using phylogeographic methods and interpret the results in the context of ecological data on poultry density, overwintering wild bird numbers, and bird migration patterns. Our results indicate that wild waterfowl migration and domestic duck density were important to H5N8 epidemiology. Specifically, we infer that H5N8 entered the Republic of Korea via Jeonbuk province, then spread rapidly among western provinces where densities of overwintering waterfowl and domestic ducks are higher, yet rarely persisted in eastern regions. The common ancestor of H5N8 in the Republic of Korea was estimated to have arrived during the peak of inward migration of overwintering birds. Recent virus isolations likely represent re-introductions via bird migration from an as-yet unsampled reservoir. Based on the limited data from outside the Republic of Korea, our data suggest that H5N8 may have entered Europe at least twice, and Asia at least three times from this reservoir, most likely carried by wild migrating birds.
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