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Shaha M, Majumder S, Hossain MS, Jahan M, Rahmat R, Asma R, Islam MA, Rahman MH, Das KC, Sarker PK, Mahtab MA, Akbar SMF, Salimullah M. Identification of a novel variant of hepatitis B virus isolated from patient co-infected with hepatitis C virus. Virus Res 2022; 319:198859. [PMID: 35809696 DOI: 10.1016/j.virusres.2022.198859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 07/05/2022] [Accepted: 07/05/2022] [Indexed: 11/16/2022]
Abstract
Hepatitis B virus (HBV) is a major public health concern worldwide. Co-infection of hepatitis B patients with other pathogens intensifies the severity of the disease. We report a novel variant of hepatitis B virus (HBV) in Bangladesh isolated from a patient co-infected with hepatitis C virus (HCV) who exhibited liver cirrhosis. From 150 collected plasma samples, we sequenced HBV complete genome from one HBV-HCV co-infected patient. The complete genome was analysed using bioinformatics tools, NCBI BLAST, Geno2Pheno, and SnapGene software. The strain belongs to genotype A and subgenotype A1. Upon analysing the complete genome of this strain, we found a frameshift deletion of 54 nucleotides at the pre-S2 region, a functional regulator of HBV surface protein. Furthermore, we observed a Y126H mutation in the polymerase protein of this strain. This is the first report with such an unusual pre-S deletion event of the HBV genome in an HCV-co-infected patient associated with liver cirrhosis. These findings may inform scientists about genomic modifications in the HBV genome associated with HCV co-infection.
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Affiliation(s)
- Modhusudon Shaha
- Microbial Biotechnology Division, National Institute of Biotechnology, Savar, Dhaka 1349, Bangladesh; Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia
| | - Sumen Majumder
- Microbial Biotechnology Division, National Institute of Biotechnology, Savar, Dhaka 1349, Bangladesh; Department of Microbiology, Jagannath University, Dhaka 1000, Bangladesh
| | - Md Saddam Hossain
- Microbial Biotechnology Division, National Institute of Biotechnology, Savar, Dhaka 1349, Bangladesh
| | - Munira Jahan
- Department of Virology, Bangabandhu Sheikh Mujib Medical University Hospital, Dhaka 1000, Bangladesh
| | - Raad Rahmat
- Department of Mathematics and Natural Sciences, School of Data and Sciences, BRAC University, Mohakhali, Dhaka 1212, Bangladesh
| | - Ridwana Asma
- Department of Virology, Bangabandhu Sheikh Mujib Medical University Hospital, Dhaka 1000, Bangladesh
| | | | - Md Hadisur Rahman
- Molecular Biotechnology Division, National Institute of Biotechnology, Savar, Dhaka 1349, Bangladesh
| | - Keshob Chandra Das
- Molecular Biotechnology Division, National Institute of Biotechnology, Savar, Dhaka 1349, Bangladesh
| | - Palash Kumar Sarker
- Microbial Biotechnology Division, National Institute of Biotechnology, Savar, Dhaka 1349, Bangladesh
| | - Mamun Al Mahtab
- Department of Hepatology, Bangabandhu Sheikh Mujib Medical University Hospital, Dhaka 1000, Bangladesh
| | | | - Md Salimullah
- Molecular Biotechnology Division, National Institute of Biotechnology, Savar, Dhaka 1349, Bangladesh.
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Riaz S, Bashir MF, Haider S, Rahid N. Association of genotypes with viral load and biochemical markers in HCV-infected Sindhi patients. Braz J Microbiol 2016; 47:980-986. [PMID: 27528079 PMCID: PMC5052380 DOI: 10.1016/j.bjm.2016.07.014] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2015] [Accepted: 04/05/2016] [Indexed: 12/16/2022] Open
Abstract
The presented study had two objectives. The first was to examine distributions of Hepatitis C Virus (HCV) genotypes in Sindh, Pakistan, where HCV is prevalent. The other was to explore clinically relevant relationships between the genotypes, viral load (measured by real-time polymerase chain reaction assays) and biochemical markers. For this, 1471 HCV-infected patients in six cities in Sindh were recruited and sampled. HCV genotype distributions varied among the cities, but genotype 3a was most prevalent, followed by 3b, 1a and 1b (detected in 51.5, 22.7. 9.25 and 3.2% of the cases, respectively). No type-specific sequences were detected in serum samples from 189 (12.8%) of the 1471 patients. Frequencies of low (<200,000IU/mL serum), intermediate (200,000-600,000IU/mL serum) and high (>600,000IU/mL serum) viral loads were respectively 45.4, 16.5 and 38.1% for patients infected with genotype 3, and 16.9, 36.9 and 46.2%, respectively, for patients with other genotypes. Infection with genotype 1a was associated with significantly higher (p<0.005) alanine aminotransferase, aspartate aminotransferase and alkaline phosphatase titers than infection with genotype 3a. The results will help in the formulation of treatment strategies.
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Affiliation(s)
- Saba Riaz
- Citilab and Research Centre, Division of Molecular Pathology, Lahore, Pakistan; University of the Punjab, Department of Microbiology and Molecular Genetics, Lahore, Pakistan.
| | - Muhammad Faisal Bashir
- University of the Punjab, School of Biological Sciences, Lahore, Pakistan; Citilab and Research Centre, Division of Molecular Pathology, Lahore, Pakistan
| | - Saleem Haider
- University of the Punjab, School of Biological Sciences, Lahore, Pakistan; University of the Punjab, Institute of Agricultural Sciences, Lahore, Pakistan.
| | - Naeem Rahid
- University of the Punjab, School of Biological Sciences, Lahore, Pakistan
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