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Jakóbik J, Drohvalenko M, Fernandez Melendez E, Kępa E, Klynova O, Fedorova A, Korshunov O, Marushchak O, Nekrasova O, Suriadna N, Smirnov N, Tkachenko O, Tupikov A, Dufresnes C, Zinenko O, Pabijan M. Countrywide screening supports model-based predictions of the distribution of Batrachochytrium dendrobatidis in Ukraine. DISEASES OF AQUATIC ORGANISMS 2024; 159:15-27. [PMID: 39087616 DOI: 10.3354/dao03802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/02/2024]
Abstract
The chytrid Batrachochytrium dendrobatidis (Bd) is a widespread fungus causing amphibian declines across the globe. Although data on Bd occurrence in Eastern Europe are scarce, a recent species distribution model (SDM) for Bd reported that western and north-western parts of Ukraine are highly suitable to the pathogen. We verified the SDM-predicted range of Bd in Ukraine by sampling amphibians across the country and screening for Bd using qPCR. A total of 446 amphibian samples (tissue and skin swabs) from 11 species were collected from 36 localities. We obtained qPCR-positive results for 33 samples including waterfrogs (Pelophylax esculentus complex) and fire- and yellow-bellied toads (Bombina spp.) from 8 localities. We found that Bd-positive localities had significantly higher predicted Bd habitat suitability than sites that were pathogen-free. Amplification and sequencing of the internal transcribed spacer (ITS) region of samples with the highest Bd load revealed matches with ITS haplotypes of the globally distributed BdGPL strain, and a single case of the BdASIA-2/BdBRAZIL haplotype. We found that Bd was non-randomly distributed across Ukraine, with infections present in the western and north-central forested peripheries of the country with a relatively cool, moist climate. On the other hand, our results suggest that Bd is absent or present in low abundance in the more continental central, southern and eastern regions of Ukraine, corroborating the model-predicted distribution of chytrid fungus. These areas could potentially serve as climatic refugia for Bd-susceptible amphibian hosts.
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Affiliation(s)
- Joanna Jakóbik
- Institute of Zoology and Biomedical Research, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland
| | - Mykola Drohvalenko
- Institute of Zoology and Biomedical Research, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland
- Zoology and Animal Ecology Department, School of Biology, V. N. Karazin Kharkiv National University, 61022 Kharkiv, Ukraine
| | - Eduardo Fernandez Melendez
- Institute of Zoology and Biomedical Research, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland
- Department of Pathobiology, Pharmacology and Zoological Medicine, Faculty of Veterinary Medicine, 9820 Merelbeke, Belgium
| | - Emilia Kępa
- Institute of Zoology and Biomedical Research, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland
| | - Oleksandra Klynova
- Department of Mycology and Plant Resistance, School of Biology, V. N. Karazin Kharkiv National University, 61022 Kharkiv, Ukraine
| | - Anna Fedorova
- Zoology and Animal Ecology Department, School of Biology, V. N. Karazin Kharkiv National University, 61022 Kharkiv, Ukraine
- Laboratory of Fish Genetics, Institute of Animal Physiology and Genetics, Czech Academy of Sciences, 277 21 Liběchov, Czech Republic
| | - Oleksii Korshunov
- Zoology and Animal Ecology Department, School of Biology, V. N. Karazin Kharkiv National University, 61022 Kharkiv, Ukraine
| | - Oleksii Marushchak
- I. I. Schmalhausen Institute of Zoology, National Academy of Sciences of Ukraine, 01054 Kyiv, Ukraine
- Université de Strasbourg, CNRS, IPHC UMR 7178, 67000 Strasbourg, France
| | - Oksana Nekrasova
- I. I. Schmalhausen Institute of Zoology, National Academy of Sciences of Ukraine, 01054 Kyiv, Ukraine
- Université de Strasbourg, CNRS, IPHC UMR 7178, 67000 Strasbourg, France
- Department of Ecology, Institute of Life Sciences and Technologies, Daugavpils University, 5401 Daugavpils, Latvia
| | - Natalia Suriadna
- Melitopol Institute of Ecology and Social Technologies of the University Ukraine, 04071 Kyiv, Ukraine
| | - Nazar Smirnov
- Chernivtsi Regional Museum of Local Lore, 58002 Chernivtsi, Ukraine
| | - Oksana Tkachenko
- T.H. Shevchenko National University Chernihiv Colehium, 14013 Chernihiv, Ukraine
| | - Andrii Tupikov
- Society for Conservation GIS Ukraine, Svobody sq. 4, 61022 Kharkiv, Ukraine
| | - Christophe Dufresnes
- Institut de Systématique, Evolution, Biodiversité, Muséum national d'Histoire naturelle, CNRS, Sorbonne Université, EPHE-PSL, Université des Antilles, 75005 Paris, France
| | - Oleksandr Zinenko
- Department of Mycology and Plant Resistance, School of Biology, V. N. Karazin Kharkiv National University, 61022 Kharkiv, Ukraine
| | - Maciej Pabijan
- Institute of Zoology and Biomedical Research, Faculty of Biology, Jagiellonian University, 30-387 Kraków, Poland
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Böning P, Lötters S, Barzaghi B, Bock M, Bok B, Bonato L, Ficetola GF, Glaser F, Griese J, Grabher M, Leroux C, Munimanda G, Manenti R, Ludwig G, Preininger D, Rödel MO, Seibold S, Smith S, Tiemann L, Thein J, Veith M, Plewnia A. Alpine salamanders at risk? The current status of an emerging fungal pathogen. PLoS One 2024; 19:e0298591. [PMID: 38758948 PMCID: PMC11101120 DOI: 10.1371/journal.pone.0298591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Accepted: 01/28/2024] [Indexed: 05/19/2024] Open
Abstract
Amphibians globally suffer from emerging infectious diseases like chytridiomycosis caused by the continuously spreading chytrid fungi. One is Batrachochytrium salamandrivorans (Bsal) and its disease ‒ the 'salamander plague' ‒ which is lethal to several caudate taxa. Recently introduced into Western Europe, long distance dispersal of Bsal, likely through human mediation, has been reported. Herein we study if Alpine salamanders (Salamandra atra and S. lanzai) are yet affected by the salamander plague in the wild. Members of the genus Salamandra are highly susceptible to Bsal leading to the lethal disease. Moreover, ecological modelling has shown that the Alps and Dinarides, where Alpine salamanders occur, are generally suitable for Bsal. We analysed skin swabs of 818 individuals of Alpine salamanders and syntopic amphibians at 40 sites between 2017 to 2022. Further, we compiled those with published data from 319 individuals from 13 sites concluding that Bsal infections were not detected. Our results suggest that the salamander plague so far is absent from the geographic ranges of Alpine salamanders. That means that there is still a chance to timely implement surveillance strategies. Among others, we recommend prevention measures, citizen science approaches, and ex situ conservation breeding of endemic salamandrid lineages.
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Affiliation(s)
- Philipp Böning
- Department of Biogeography, Trier University, Trier, Germany
| | - Stefan Lötters
- Department of Biogeography, Trier University, Trier, Germany
| | - Benedetta Barzaghi
- Department of Environmental Science and Policy, University of Milan, Milan, Italy
| | - Marvin Bock
- Department of Biogeography, Trier University, Trier, Germany
| | - Bobby Bok
- St. Michael College, Zaandam, Netherlands
| | - Lucio Bonato
- Department of Biology, University of Padova, Padova, Italy
- National Biodiversity Future Center, Palermo, Italy
| | | | | | | | | | - Camille Leroux
- Centre d’Ecologie et des Sciences de la Conservation (CESCO), Muséum National d’Histoire Naturelle, Centre National de la Recherche Scientifique, Sorbonne Université, Paris, France
- Auddicé Biodiversité–ZAC du Chevalement, Roost-Warendin, France
- Museo Nacional de Ciencias Naturales, CSIC, Madrid, Spain
| | - Gopikrishna Munimanda
- Konrad Lorenz Institute of Ethology, University of Veterinary Medicine Vienna, Vienna, Austria
| | - Raoul Manenti
- Department of Environmental Science and Policy, University of Milan, Milan, Italy
| | | | | | - Mark-Oliver Rödel
- Museum für Naturkunde–Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany
| | - Sebastian Seibold
- Forest Zoology, Technische Universität Dresden, Tharandt, Germany
- Berchtesgaden National Park, Berchtesgaden, Germany
- Ecosystem Dynamics and Forest Management, Technical University of Munich, Freising, Germany
| | - Steve Smith
- Konrad Lorenz Institute of Ethology, University of Veterinary Medicine Vienna, Vienna, Austria
| | - Laura Tiemann
- Department of Neurology, TUM School of Medicine, Technical University of Munich, Munich, Germany
| | - Jürgen Thein
- Büro für Faunistik und Umweltbildung, Haßfurt, Germany
| | - Michael Veith
- Department of Biogeography, Trier University, Trier, Germany
| | - Amadeus Plewnia
- Department of Biogeography, Trier University, Trier, Germany
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3
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Van Meter RJ, Glinski DA, Wanat JJ, Thomas Purucker S, Matthew Henderson W. Validation of Salamander Dermal Mucus Swabs as a Novel, Nonlethal Approach for Amphibian Metabolomics and Glutathione Analysis Following Pesticide Exposure. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2024; 43:1126-1137. [PMID: 38483077 PMCID: PMC11420827 DOI: 10.1002/etc.5848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 12/27/2023] [Accepted: 02/13/2024] [Indexed: 09/26/2024]
Abstract
Evaluating biomarkers of stress in amphibians is critical to conservation, yet current techniques are often destructive and/or time-consuming, which limits ease of use. In the present study, we validate the use of dermal swabs in spotted salamanders (Ambystoma maculatum) for biochemical profiling, as well as glutathione (GSH) stress response following pesticide exposure. Thirty-three purchased spotted salamanders were acclimated to laboratory conditions at Washington College (Chestertown, MD, USA) for 4 weeks. Following acclimation, salamanders were randomly sorted into three groups for an 8-h pesticide exposure on soil: control with no pesticide, 2,4-dichlorophenoxyacetic acid (2,4-D), or chlorpyrifos. Before and after exposure, mucus samples were obtained by gently rubbing a polyester-tipped swab 50 times across the ventral and dorsal surfaces. Salamanders were humanely euthanized and dissected to remove the brain for acetylcholinesterase and liver for GSH and hepatic metabolome analyses, and a whole-body tissue homogenate was used for pesticide quantification. Levels of GSH were present in lower quantities on dermal swabs relative to liver tissues for chlorpyrifos, 2,4-D, and control treatments. However, 2,4-D exposures demonstrated a large effect size increase for GSH levels in livers (Cohen's d = 0.925, p = 0.036). Other GSH increases were statistically insignificant, and effect sizes were characterized as small for 2,4-D mucosal swabs (d = 0.36), medium for chlorpyrifos mucosal swabs (d = 0.713), and negligible for chlorpyrifos liver levels (d = 0.012). The metabolomics analyses indicated that the urea cycle, alanine, and glutamate metabolism biological pathways were perturbed by both sets of pesticide exposures. Obtaining mucus samples through dermal swabbing in amphibians is a viable technique for evaluating health in these imperiled taxa. Environ Toxicol Chem 2024;43:1126-1137. © 2024 SETAC.
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Affiliation(s)
- Robin J Van Meter
- Biology and Environmental Science & Studies, Washington College, Chestertown, Maryland, USA
| | - Donna A Glinski
- Office of Research and Development, Center for Environmental Measurement and Modeling, US Environmental Protection Agency, Athens, Georgia, USA
| | - Jennifer J Wanat
- Biology and Environmental Science & Studies, Washington College, Chestertown, Maryland, USA
| | - S Thomas Purucker
- Office of Research and Development, Center for Computational Toxicology and Exposure, US Environmental Protection Agency, Durham, North Carolina
| | - W Matthew Henderson
- Office of Research and Development, Center for Environmental Measurement and Modeling, US Environmental Protection Agency, Athens, Georgia, USA
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4
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Knupp C, Soto E, Loch TP. Varying Flavobacterium psychrophilum shedding dynamics in three bacterial coldwater disease-susceptible salmonid (Family Salmonidae) species. Microbiol Spectr 2024; 12:e0360123. [PMID: 38112454 PMCID: PMC10846279 DOI: 10.1128/spectrum.03601-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 11/22/2023] [Indexed: 12/21/2023] Open
Abstract
Flavobacterium psychrophilum causes bacterial coldwater disease (BCWD) and is responsible for substantial losses in farm and hatchery-reared salmonids (Family Salmonidae). Although F. psychrophilum infects multiple economically important salmonids and is transmitted horizontally, the extent of knowledge regarding F. psychrophilum shedding rates and duration is limited to rainbow trout (Oncorhynchus mykiss). Concurrently, hundreds of F. psychrophilum sequence types (STs) have been described using multilocus sequence typing (MLST), and evidence suggests that some variants have distinct phenotypes, including differences in host associations. Whether shedding dynamics differ among F. psychrophilum variants and/or salmonids remains unknown. Thus, three F. psychrophilum isolates (e.g., US19, US62, and US87) in three MLST STs (e.g., ST13, ST277, and ST275) with apparent host associations for coho salmon (O. kisutch), Atlantic salmon (Salmo salar), or rainbow trout were intramuscularly injected into each respective fish species. Shedding rates of live and dead fish were determined by quantifying F. psychrophilum loads in water via quantitative PCR. Both live and dead Atlantic and coho salmon shed F. psychrophilum, as did live and dead rainbow trout. Regardless of salmonid species, dead fish shed F. psychrophilum at higher rates (e.g., up to ~108-1010 cells/fish/hour) compared to live fish (up to ~107-109 cells/fish/hour) and for a longer duration (5-35 days vs 98 days); however, shedding dynamics varied by F. psychrophilum variant and/or host species, a matter that may complicate BCWD management. Findings herein expand knowledge on F. psychrophilum shedding dynamics across multiple salmonid species and can be used to inform future BCWD management strategies.IMPORTANCEFlavobacterium psychrophilum causes bacterial coldwater disease (BCWD) and rainbow trout fry syndrome, both of which cause substantial losses in farmed and hatchery-reared salmon and trout populations worldwide. This study provides insight into F. psychrophilum shedding dynamics in rainbow trout (Oncorhynchus mykiss) and, for the first time, coho salmon (O. kisutch) and Atlantic salmon (Salmo salar). Findings revealed that live and dead fish of all fish species shed the bacterium. However, dead fish shed F. psychrophilum at higher rates than living fish, emphasizing the importance of removing dead fish in farms and hatcheries. Furthermore, shedding dynamics may differ according to F. psychrophilum genetic variant and/or fish species, a matter that may complicate BCWD management. Overall, study results provide deeper insight into F. psychrophilum shedding dynamics and will guide future BCWD management strategies.
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Affiliation(s)
- Christopher Knupp
- Michigan State University-Aquatic Animal Health Laboratory, East Lansing, Michigan, USA
- Department of Fisheries and Wildlife, College of Agriculture and Natural Resources, Michigan State University, East Lansing, Michigan, USA
| | - Esteban Soto
- Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California, Davis, California, USA
| | - Thomas P. Loch
- Michigan State University-Aquatic Animal Health Laboratory, East Lansing, Michigan, USA
- Department of Fisheries and Wildlife, College of Agriculture and Natural Resources, Michigan State University, East Lansing, Michigan, USA
- Department of Pathobiology and Diagnostic Investigation, College of Veterinary Medicine, Michigan State University, East Lansing, Michigan, USA
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Osborne OG, Jiménez RR, Byrne AQ, Gratwicke B, Ellison A, Muletz-Wolz CR. Phylosymbiosis shapes skin bacterial communities and pathogen-protective function in Appalachian salamanders. THE ISME JOURNAL 2024; 18:wrae104. [PMID: 38861457 PMCID: PMC11195472 DOI: 10.1093/ismejo/wrae104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 05/09/2024] [Accepted: 06/10/2024] [Indexed: 06/13/2024]
Abstract
Phylosymbiosis is an association between host-associated microbiome composition and host phylogeny. This pattern can arise via the evolution of host traits, habitat preferences, diets, and the co-diversification of hosts and microbes. Understanding the drivers of phylosymbiosis is vital for modelling disease-microbiome interactions and manipulating microbiomes in multi-host systems. This study quantifies phylosymbiosis in Appalachian salamander skin in the context of infection by the fungal pathogen Batrachochytrium dendrobatidis (Bd), while accounting for environmental microbiome exposure. We sampled ten salamander species representing >150M years of divergence, assessed their Bd infection status, and analysed their skin and environmental microbiomes. Our results reveal a significant signal of phylosymbiosis, whereas the local environmental pool of microbes, climate, geography, and Bd infection load had a smaller impact. Host-microbe co-speciation was not evident, indicating that the effect stems from the evolution of host traits influencing microbiome assembly. Bd infection is correlated with host phylogeny and the abundance of Bd-inhibitory bacterial strains, suggesting that the long-term evolutionary dynamics between salamander hosts and their skin microbiomes affect the present-day distribution of the pathogen, along with habitat-linked exposure risk. Five Bd-inhibitory bacterial strains showed unusual generalism: occurring in most host species and habitats. These generalist strains may enhance the likelihood of probiotic manipulations colonising and persisting on hosts. Our results underscore the substantial influence of host-microbiome eco-evolutionary dynamics on environmental health and disease outcomes.
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Affiliation(s)
- Owen G Osborne
- School of Environmental and Natural Sciences, Bangor University, Deiniol Road, Bangor, Gwynedd LL57 2DG, United Kingdom
| | - Randall R Jiménez
- Center for Conservation Genomics, Smithsonian’s National Zoological Park and Conservation Biology Institute, Washington, DC 20008, United States
- International Union for Conservation of Nature, C. 39, Los Yoses, San Jose, 146-2150, Costa Rica
| | - Allison Q Byrne
- Center for Conservation Genomics, Smithsonian’s National Zoological Park and Conservation Biology Institute, Washington, DC 20008, United States
- Department of Environmental Science, Policy and Management, University of California, Berkeley, CA 94720-3114, United States
| | - Brian Gratwicke
- Center for Species Survival, Smithsonian’s National Zoological Park and Conservation Biology Institute, Front Royal, VA 22630, United States
| | - Amy Ellison
- School of Environmental and Natural Sciences, Bangor University, Deiniol Road, Bangor, Gwynedd LL57 2DG, United Kingdom
| | - Carly R Muletz-Wolz
- Center for Conservation Genomics, Smithsonian’s National Zoological Park and Conservation Biology Institute, Washington, DC 20008, United States
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6
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Mantzana-Oikonomaki V, Desreveaux A, Preißler K, Maan ME, Spitzen-van der Sluijs A, Sabino-Pinto J. FIRST RECORD OF BATRACHOCHYTRIUM DENDROBATIDIS IN THE NORTHERN NETHERLANDS. J Parasitol 2024; 110:11-16. [PMID: 38232760 DOI: 10.1645/22-126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2024] Open
Abstract
Batrachochytrium dendrobatidis (Bd) infects amphibians and has been linked to the decline of hundreds of anuran amphibians all over the world. In the province of Groningen in the Netherlands, this fungal pathogen was not detected before this study. To determine whether Groningen was Bd-free, we surveyed 12 locations in this province in 2020 and 2021. Samples were then used to quantify the presence of Bd with a qPCR assay. In total, 2 out of 110 (∼0.02%) collected in 2020 and 11 out of 249 samples collected in 2021 tested positive for Bd. Infected amphibians were found in 4 out of the 12 sites, and the prevalence of Bd was estimated at 4% for both years combined. Our study provides the first record of Bd in Groningen, and we hypothesize that Bd is present throughout the Netherlands in regions currently considered "Bd-free." Furthermore, we warn scientists and policymakers to be apprehensive when calling a site free from Bd when sampling is limited or not recent.
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Affiliation(s)
- Vasiliki Mantzana-Oikonomaki
- University of Groningen, GELIFES (Groningen Institute for Evolutionary Life Sciences), Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Anne Desreveaux
- University of Groningen, GELIFES (Groningen Institute for Evolutionary Life Sciences), Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Kathleen Preißler
- Institute of Biology, Molecular Evolution and Systematics of Animals, University of Leipzig, Talstraße 33, 04103 Leipzig, Germany
| | - Martine E Maan
- University of Groningen, GELIFES (Groningen Institute for Evolutionary Life Sciences), Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Annemarieke Spitzen-van der Sluijs
- Reptile, Amphibian and Fish Conservation Netherlands (RAVON), PO Box 1413, 5601 BK Nijmegen, The Netherlands
- Institute for Water and Wetland Research, Animal Ecology and Physiology, Radboud Universiteit, PO Box 9010, 6500 GL Nijmegen, The Netherlands
| | - Joana Sabino-Pinto
- University of Groningen, GELIFES (Groningen Institute for Evolutionary Life Sciences), Nijenborgh 7, 9747 AG Groningen, The Netherlands
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Mulla L, Hernández-Gómez O. Wildfires disturb the natural skin microbiota of terrestrial salamanders. Environ Microbiol 2023; 25:2203-2215. [PMID: 37340556 DOI: 10.1111/1462-2920.16452] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 06/04/2023] [Indexed: 06/22/2023]
Abstract
Environmental change can disturb natural associations between wildlife and microbial symbionts, in many cases to the detriment of host health. We used a North American terrestrial salamander system to assess how the skin microbiota of amphibians responds to wildfires. In northern California's redwood/oak forests, we assessed how recent wildfires affected the skin microbiota of three different salamander species (Taricha sp., Batrachoseps attenuatus, and Ensatina eschscholtzii) over two different sampling seasons in 2018 and 2021. We found species-specific responses to wildfire disturbance on the alpha diversity of the skin microbiota of terrestrial salamanders, although burning in general altered the composition of the skin microbiota. The effect of burning on alpha diversities and body condition indices varied by sampling season, suggesting an additional effect of annual climatic conditions on body condition and skin microbiota response. We tested all salamanders for Batrachochytrium dendrobatidis and found four infected individuals in 2018 and none in 2021. Our study documents correlations in the skin microbiota response to an increasing source of disturbance in western North American ecosystems. In addition, our results highlight the need to consider the effects of increased wildfire regimes/intensities and longitudinal effects on wildlife-associated microbiota and animal health.
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Affiliation(s)
- Lubna Mulla
- Department of Natural Sciences and Mathematics, School of Health and Natural Sciences, Dominican University of California, San Rafael, California, USA
| | - Obed Hernández-Gómez
- Department of Natural Sciences and Mathematics, School of Health and Natural Sciences, Dominican University of California, San Rafael, California, USA
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8
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Goldberg TL, Blevins E, Leis EM, Standish IF, Richard JC, Lueder MR, Cer RZ, Bishop-Lilly KA. Plasticity, Paralogy, and Pseudogenization: Rhabdoviruses of Freshwater Mussels Elucidate Mechanisms of Viral Genome Diversification and the Evolution of the Finfish-Infecting Rhabdoviral Genera. J Virol 2023; 97:e0019623. [PMID: 37154732 PMCID: PMC10231222 DOI: 10.1128/jvi.00196-23] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2023] [Accepted: 04/07/2023] [Indexed: 05/10/2023] Open
Abstract
Viruses in the family Rhabdoviridae display remarkable genomic variation and ecological diversity. This plasticity occurs despite the fact that, as negative sense RNA viruses, rhabdoviruses rarely if ever recombine. Here, we describe nonrecombinatorial evolutionary processes leading to genomic diversification in the Rhabdoviridae inferred from two novel rhabdoviruses of freshwater mussels (Mollusca: Bivalvia: Unionida). Killamcar virus 1 (KILLV-1) from a plain pocketbook (Lampsilis cardium) is closely related phylogenetically and transcriptionally to finfish-infecting viruses in the subfamily Alpharhabdovirinae. KILLV-1 offers a novel example of glycoprotein gene duplication, differing from previous examples in that the paralogs overlap. Evolutionary analyses reveal a clear pattern of relaxed selection due to subfunctionalization in rhabdoviral glycoprotein paralogs, which has not previously been described in RNA viruses. Chemarfal virus 1 (CHMFV-1) from a western pearlshell (Margaritifera falcata) is closely related phylogenetically and transcriptionally to viruses in the genus Novirhabdovirus, the sole recognized genus in the subfamily Gammarhabdovirinae, representing the first known gammarhabdovirus of a host other than finfish. The CHMFV-1 G-L noncoding region contains a nontranscribed remnant gene of precisely the same length as the NV gene of most novirhabdoviruses, offering a compelling example of pseudogenization. The unique reproductive strategy of freshwater mussels involves an obligate parasitic stage in which larvae encyst in the tissues of finfish, offering a plausible ecological mechanism for viral host-switching. IMPORTANCE Viruses in the family Rhabdoviridae infect a variety of hosts, including vertebrates, invertebrates, plants and fungi, with important consequences for health and agriculture. This study describes two newly discovered viruses of freshwater mussels from the United States. One virus from a plain pocketbook (Lampsilis cardium) is closely related to fish-infecting viruses in the subfamily Alpharhabdovirinae. The other virus from a western pearlshell (Margaritifera falcata) is closely related to viruses in the subfamily Gammarhabdovirinae, which until now were only known to infect finfish. Genome features of both viruses provide new evidence of how rhabdoviruses evolved their extraordinary variability. Freshwater mussel larvae attach to fish and feed on tissues and blood, which may explain how rhabdoviruses originally jumped between mussels and fish. The significance of this research is that it improves our understanding of rhabdovirus ecology and evolution, shedding new light on these important viruses and the diseases they cause.
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Affiliation(s)
- Tony L. Goldberg
- Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Emilie Blevins
- Xerces Society for Invertebrate Conservation, Portland, Oregon, USA
| | - Eric M. Leis
- U.S. Fish and Wildlife Service, La Crosse Fish Health Center, Midwest Fisheries Center, Onalaska, Wisconsin, USA
| | - Isaac F. Standish
- U.S. Fish and Wildlife Service, La Crosse Fish Health Center, Midwest Fisheries Center, Onalaska, Wisconsin, USA
| | - Jordan C. Richard
- Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, Wisconsin, USA
- U.S. Fish and Wildlife Service, Southwestern Virginia Field Office, Abingdon, Virginia, USA
| | - Matthew R. Lueder
- Leidos, Reston, Virginia, USA
- Biological Defense Research Directorate, Naval Medical Research Command–Frederick, Fort Detrick, Maryland, USA
| | - Regina Z. Cer
- Biological Defense Research Directorate, Naval Medical Research Command–Frederick, Fort Detrick, Maryland, USA
| | - Kimberly A. Bishop-Lilly
- Biological Defense Research Directorate, Naval Medical Research Command–Frederick, Fort Detrick, Maryland, USA
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9
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Leis EM, Dziki S, Standish I, Waller D, Richard J, Weinzinger J, Harris C, Knowles S, Goldberg T. A Bacteriological Comparison of the Hemolymph from Healthy and Moribund Unionid Mussel Populations in the Upper Midwestern U.S.A. Prompts the Development of Diagnostic Assays to Detect Yokenella regensburgei. Microorganisms 2023; 11:microorganisms11041068. [PMID: 37110491 PMCID: PMC10145785 DOI: 10.3390/microorganisms11041068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Revised: 04/07/2023] [Accepted: 04/13/2023] [Indexed: 04/29/2023] Open
Abstract
Recent bacteriological investigations of freshwater mussel mortality events in the southeastern United States have identified a variety of bacteria and differences in bacterial communities between sick and healthy mussels. In particular, Yokenella regensburgei and Aeromonas spp. have been shown to be associated with moribund mussels, although it remains unclear whether these bacteria are causes or consequences of disease. To further understand the role of bacteria in mussel epizootics, we investigated mortality events that occurred in the upper Midwest in the Embarrass River (Wisconsin) and the Huron River (Michigan). For comparison, we also studied mussels from an unaffected population in the St. Croix River (Wisconsin). Diverse bacterial genera were identified from these sites, including Y. regensburgei from moribund mussels in the Embarrass River (Wisconsin). This bacterium has also been consistently isolated during ongoing mortality events in the Clinch River (Virginia). Subsequently, we developed and validated molecular assays for the detection of Yokenella to use in future investigations of mussel mortality events and to identify environmental reservoirs of this bacterium.
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Affiliation(s)
- Eric M Leis
- La Crosse Fish Health Center-Midwest Fisheries Center, U.S. Fish and Wildlife Service, Onalaska, WI 54650, USA
| | - Sara Dziki
- La Crosse Fish Health Center-Midwest Fisheries Center, U.S. Fish and Wildlife Service, Onalaska, WI 54650, USA
| | - Isaac Standish
- La Crosse Fish Health Center-Midwest Fisheries Center, U.S. Fish and Wildlife Service, Onalaska, WI 54650, USA
| | - Diane Waller
- U.S. Geological Survey, Upper Midwest Environmental Sciences Center, La Crosse, WI 54603, USA
| | - Jordan Richard
- Department of Pathobiological Sciences and Freshwater & Marine Sciences Program, University of Wisconsin-Madison, Madison, WI 53711, USA
- Southwestern Virginia Field Office, U.S. Fish and Wildlife Service, Abingdon, VA 24210, USA
| | - Jesse Weinzinger
- Wisconsin Department of Natural Resources, Madison, WI 53703, USA
| | - Cleyo Harris
- Michigan Department of Natural Resources, Waterford, MI 48327, USA
| | - Susan Knowles
- U.S. Geological Survey, National Wildlife Health Center, Madison, WI 53711, USA
| | - Tony Goldberg
- Department of Pathobiological Sciences and Freshwater & Marine Sciences Program, University of Wisconsin-Madison, Madison, WI 53711, USA
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10
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Fieschi-Méric L, van Leeuwen P, Denoël M, Lesbarrères D. Encouraging news for in situ conservation: Translocation of salamander larvae has limited impacts on their skin microbiota. Mol Ecol 2023. [PMID: 36872055 DOI: 10.1111/mec.16914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Revised: 02/07/2023] [Accepted: 03/02/2023] [Indexed: 03/07/2023]
Abstract
The key role of symbiotic skin bacteria communities in amphibian resistance to emerging pathogens is well recognized, but factors leading to their dysbiosis are not fully understood. In particular, the potential effects of population translocations on the composition and diversity of hosts' skin microbiota have received little attention, although such transfers are widely carried out as a strategy for amphibian conservation. To characterize the potential reorganization of the microbiota over such a sudden environmental change, we conducted a common-garden experiment simulating reciprocal translocations of yellow-spotted salamander larvae across three lakes. We sequenced skin microbiota samples collected before and 15 days after the transfer. Using a database of antifungal isolates, we identified symbionts with known function against the pathogen Batrachochytrium dendrobatidis, a major driver of amphibian declines. Our results indicate an important reorganization of bacterial assemblages throughout ontogeny, with strong changes in composition, diversity and structure of the skin microbiota in both control and translocated individuals over the 15 days of monitoring. Unexpectedly, the diversity and community structure of the microbiota were not significantly affected by the translocation event, thus suggesting a strong resilience of skin bacterial communities to environmental change-at least across the time-window studied here. A few phylotypes were more abundant in the microbiota of translocated larvae, but no differences were found among pathogen-inhibiting symbionts. Taken together, our results support amphibian translocations as a promising strategy for this endangered animal class, with limited impact on their skin microbiota.
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Affiliation(s)
- Léa Fieschi-Méric
- Laboratory of Ecology and Conservation of Amphibians (LECA), Freshwater and OCeanic science Unit of reSearch (FOCUS), Université de Liège, Liège, Belgium.,Biology Department, Laurentian University, Sudbury, Ontario, Canada
| | - Pauline van Leeuwen
- Biology Department, Laurentian University, Sudbury, Ontario, Canada.,Conservation Genetics Laboratory, University de Liège, Liège, Belgium
| | - Mathieu Denoël
- Laboratory of Ecology and Conservation of Amphibians (LECA), Freshwater and OCeanic science Unit of reSearch (FOCUS), Université de Liège, Liège, Belgium
| | - David Lesbarrères
- Biology Department, Laurentian University, Sudbury, Ontario, Canada.,Environment and Climate Change Canada, Ottawa, Ontario, Canada
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11
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Plewnia A, Lötters S, Veith M, Peters M, Böning P. Successful Drug-Mediated Host Clearance of Batrachochytrium salamandrivorans. Emerg Infect Dis 2023; 29:411-414. [PMID: 36692470 PMCID: PMC9881767 DOI: 10.3201/eid2902.221162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
Abstract
Skin fungi are among the most dangerous drivers of global amphibian declines, and few mitigation strategies are known. For Batrachochytrium salamandrivorans (Chytridiomycota), available treatments rely on temperature, partially combined with antifungal drugs. We report the clearance of B. salamandrivorans in 2 urodelan species using a solely drug-based approach.
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12
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Standish I, McCann R, Puzach C, Leis E, Bailey J, Dziki S, Katona R, Lark E, Edwards C, Keesler B, Reichley S, King S, Knupp C, Harrison C, Loch T, Phillips K. Development of duplex qPCR targeting Carnobacterium maltaromaticum and Vagococcus salmoninarum. JOURNAL OF FISH DISEASES 2022; 45:667-677. [PMID: 35195301 DOI: 10.1111/jfd.13592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Revised: 01/21/2022] [Accepted: 01/22/2022] [Indexed: 06/14/2023]
Abstract
In November 2018, Vagococcus salmoninarum was identified as the causative agent of a chronic coldwater streptococcosis epizootic in broodstock brook trout (Salvelinus fontinalis) at the Iron River National Fish Hatchery in Wisconsin, USA. By February 2019, the epizootic spread to adjacent raceways containing broodstock lake trout (Salvelinus namaycush), whereby fish were found to be coinfected with Carnobacterium maltaromaticum and V. salmoninarum. To differentiate these two pathogens and determine the primary cause of the lake trout morbidity, a quantitative real-time PCR (qPCR) was developed targeting the C. maltaromaticum phenylalanyl-tRNA synthase alpha subunit (pheS) gene. The qPCR was combined with a V. salmoninarum qPCR, creating a duplex qPCR assay that simultaneously quantitates C. maltaromaticum and V. salmoninarum concentrations in individual lake trout tissues, and screens presumptive isolates from hatchery inspections and wild fish from national fish hatchery source waters throughout the Great Lakes basin. Vagococcus salmoninarum and C. maltaromaticum were co-detected in broodstock brook trout from two tribal hatcheries and C. maltaromaticum was present in wild fish in source waters of several national fish hatcheries. This study provides a powerful new tool to differentiate and diagnose two emerging Gram-positive bacterial pathogens.
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Affiliation(s)
- Isaac Standish
- La Crosse Fish Health Center, United States Fish and Wildlife Service, Onalaska, Wisconsin, USA
| | - Rebekah McCann
- La Crosse Fish Health Center, United States Fish and Wildlife Service, Onalaska, Wisconsin, USA
| | - Corey Puzach
- La Crosse Fish Health Center, United States Fish and Wildlife Service, Onalaska, Wisconsin, USA
| | - Eric Leis
- La Crosse Fish Health Center, United States Fish and Wildlife Service, Onalaska, Wisconsin, USA
| | - Jennifer Bailey
- La Crosse Fish Health Center, United States Fish and Wildlife Service, Onalaska, Wisconsin, USA
| | - Sara Dziki
- La Crosse Fish Health Center, United States Fish and Wildlife Service, Onalaska, Wisconsin, USA
| | - Ryan Katona
- La Crosse Fish Health Center, United States Fish and Wildlife Service, Onalaska, Wisconsin, USA
| | - Ellen Lark
- La Crosse Fish Health Center, United States Fish and Wildlife Service, Onalaska, Wisconsin, USA
| | - Carey Edwards
- Iron River National Fish Hatchery, United States Fish and Wildlife Service, Iron River, Wisconsin, USA
| | - Brandon Keesler
- Iron River National Fish Hatchery, United States Fish and Wildlife Service, Iron River, Wisconsin, USA
| | - Stephen Reichley
- Clear Springs Foods, Buhl, Idaho, USA
- College of Veterinary Medicine and Global Center for Aquatic Food Security, Mississippi State University, Starkville, Mississippi, USA
| | | | - Christopher Knupp
- College of Agriculture and Natural Resources, Michigan State University, East Lansing, Michigan, USA
| | - Courtney Harrison
- College of Agriculture and Natural Resources, Michigan State University, East Lansing, Michigan, USA
| | - Thomas Loch
- College of Agriculture and Natural Resources, Michigan State University, East Lansing, Michigan, USA
- College of Veterinary Medicine, Michigan State University, East Lansing, Michigan, USA
| | - Kenneth Phillips
- La Crosse Fish Health Center, United States Fish and Wildlife Service, Onalaska, Wisconsin, USA
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13
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SUCCESSFUL TREATMENT OF BATRACHOCHYTRIUM DENDROBATIDIS IN EASTERN HELLBENDERS (CRYPTOBRANCHUS ALLEGANIENSIS ALLEGANIENSIS) WITH TERBINAFINE. J Zoo Wildl Med 2022; 53:228-231. [DOI: 10.1638/2020-0146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/11/2021] [Indexed: 11/21/2022] Open
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14
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de Curcio JS, Salem-Izacc SM, Pereira Neto LM, Nunes EB, Anunciação CE, de Paula Silveira-Lacerda E. Detection of Mayaro virus in Aedes aegypti mosquitoes circulating in Goiânia-Goiás-Brazil. Microbes Infect 2022; 24:104948. [DOI: 10.1016/j.micinf.2022.104948] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Revised: 01/20/2022] [Accepted: 01/21/2022] [Indexed: 10/19/2022]
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15
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Mantzana-Oikonomaki V, Maan M, Sabino-Pinto J. Wildlife pathogen detection: evaluation of alternative DNA extraction protocols. Biol Methods Protoc 2021; 6:bpab018. [PMID: 34693021 PMCID: PMC8529346 DOI: 10.1093/biomethods/bpab018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Revised: 09/13/2021] [Accepted: 09/15/2021] [Indexed: 11/14/2022] Open
Abstract
Accurate detection of wildlife pathogens is critical in wildlife disease research. False negatives or positives can have catastrophic consequences for conservation and disease-mitigation decisions. Quantitative polymerase chain reaction is commonly used for molecular detection of wildlife pathogens. The reliability of this method depends on the effective extraction of the pathogen's DNA from host samples. A wildlife disease that has been in the centre of conservationist's attention is the amphibian disease Chytridiomycosis, caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd). Here, we compare the efficiency of a spin column extraction kit (QIAGEN), commonly used in Bd DNA extraction, to an alternative spin column kit (BIOKÈ) used in extractions from other types of samples, which is considerably cheaper but not typically used for Bd DNA extraction. Additionally, we explore the effect of an enzymatic pre-treatment on detection efficiency. Both methods showed similar efficiency when extracting Bd DNA from zoospores from laboratory-created cell-cultures, as well as higher efficiency when combined with the enzymatic pre-treatment. Our results indicate that selecting the optimal method for DNA extraction is essential to ensure minimal false negatives and reduce project costs.
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Affiliation(s)
| | - Martine Maan
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, Netherlands
| | - Joana Sabino-Pinto
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, Netherlands
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16
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Bletz MC, LaBumbard BC, Le Sage EH, Woodhams DC. Extraction-free detection of amphibian pathogens from water baths. DISEASES OF AQUATIC ORGANISMS 2021; 146:81-89. [PMID: 34617514 DOI: 10.3354/dao03621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Detecting and quantifying pathogens with quick, cost-efficient and sensitive methods is needed across disease systems for addressing pertinent epidemiological questions. Typical methods rely on extracting DNA from collected samples. Here we develop and test an extraction-free method from water bath samples that is both sensitive and efficient for 2 major amphibian pathogens-Batrachochytrium dendrobatidis and B. salamandrivorans. We tested mock samples with known pathogen quantities as well as comparatively assessed detection from skin swabs and water baths from field sampled amphibians. Quantitative PCR (qPCR) directly on lyophilized water baths was able to reliably detect low loads of 10 and 1 zoospores for both pathogens, and detection rates were greater than those of swabs from field samples. Further concentration of samples did not improve detection, and collection container type did not influence pathogen load estimates. This method of lyophilization (i.e. freeze-drying) followed by direct qPCR offers an effective and efficient tool from detecting amphibian pathogens, which is crucial for surveillance efforts and estimating shedding rates for robust epidemiological understanding of transmission dynamics. Furthermore, water bath samples have multiple functions and can be used to evaluate mucosal function against pathogens and characterize mucosal components. The multifunctionality of water bath samples and reduced monetary costs and time expenditures make this method an optimal tool for amphibian disease research and may also prove to be useful in other wildlife disease systems.
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Affiliation(s)
- Molly C Bletz
- University of Massachusetts Boston, Department of Biology, 100 Morrissey Blvd, Boston, MA 02125, USA
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17
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Herczeg D, Ujszegi J, Kásler A, Holly D, Hettyey A. Host-multiparasite interactions in amphibians: a review. Parasit Vectors 2021; 14:296. [PMID: 34082796 PMCID: PMC8173923 DOI: 10.1186/s13071-021-04796-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Accepted: 05/20/2021] [Indexed: 01/15/2023] Open
Abstract
Parasites, including viruses, bacteria, fungi, protists, helminths, and arthropods, are ubiquitous in the animal kingdom. Consequently, hosts are frequently infected with more than one parasite species simultaneously. The assessment of such co-infections is of fundamental importance for disease ecology, but relevant studies involving non-domesticated animals have remained scarce. Many amphibians are in decline, and they generally have a highly diverse parasitic fauna. Here we review the literature reporting on field surveys, veterinary case studies, and laboratory experiments on co-infections in amphibians, and we summarize what is known about within-host interactions among parasites, which environmental and intrinsic factors influence the outcomes of these interactions, and what effects co-infections have on hosts. The available literature is piecemeal, and patterns are highly diverse, so that identifying general trends that would fit most host–multiparasite systems in amphibians is difficult. Several examples of additive, antagonistic, neutral, and synergistic effects among different parasites are known, but whether members of some higher taxa usually outcompete and override the effects of others remains unclear. The arrival order of different parasites and the time lag between exposures appear in many cases to fundamentally shape competition and disease progression. The first parasite to arrive can gain a marked reproductive advantage or induce cross-reaction immunity, but by disrupting the skin and associated defences (i.e., skin secretions, skin microbiome) and by immunosuppression, it can also pave the way for subsequent infections. Although there are exceptions, detrimental effects to the host are generally aggravated with increasing numbers of co-infecting parasite species. Finally, because amphibians are ectothermic animals, temperature appears to be the most critical environmental factor that affects co-infections, partly via its influence on amphibian immune function, partly due to its direct effect on the survival and growth of parasites. Besides their importance for our understanding of ecological patterns and processes, detailed knowledge about co-infections is also crucial for the design and implementation of effective wildlife disease management, so that studies concentrating on the identified gaps in our understanding represent rewarding research avenues. ![]()
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Affiliation(s)
- Dávid Herczeg
- Lendület Evolutionary Ecology Research Group, Plant Protection Institute, Centre for Agricultural Research, Eötvös Loránd Research Network, Herman Ottó út 15, Budapest, 1022, Hungary.
| | - János Ujszegi
- Lendület Evolutionary Ecology Research Group, Plant Protection Institute, Centre for Agricultural Research, Eötvös Loránd Research Network, Herman Ottó út 15, Budapest, 1022, Hungary
| | - Andrea Kásler
- Lendület Evolutionary Ecology Research Group, Plant Protection Institute, Centre for Agricultural Research, Eötvös Loránd Research Network, Herman Ottó út 15, Budapest, 1022, Hungary.,Department of Systematic Zoology and Ecology, Eötvös Loránd University, Pázmány Péter sétány 1/C, Budapest, 1117, Hungary
| | - Dóra Holly
- Lendület Evolutionary Ecology Research Group, Plant Protection Institute, Centre for Agricultural Research, Eötvös Loránd Research Network, Herman Ottó út 15, Budapest, 1022, Hungary.,Department of Systematic Zoology and Ecology, Eötvös Loránd University, Pázmány Péter sétány 1/C, Budapest, 1117, Hungary
| | - Attila Hettyey
- Lendület Evolutionary Ecology Research Group, Plant Protection Institute, Centre for Agricultural Research, Eötvös Loránd Research Network, Herman Ottó út 15, Budapest, 1022, Hungary.,Department of Ecology, Institute for Biology, University of Veterinary Medicine, Rottenbiller utca 50, Budapest, 1077, Hungary
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18
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Standish I, Leis E, Erickson S, Katona R, Baumgartner W, Hanson K, Ibrahim I, Goldberg T. Nephroblastoma in a Common Mudpuppy Necturus maculosus simultaneously Present with a Mollicute Bacterium of the Genus Acholeplasma. JOURNAL OF AQUATIC ANIMAL HEALTH 2021; 33:44-52. [PMID: 33825240 DOI: 10.1002/aah.10119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Accepted: 11/14/2020] [Indexed: 06/12/2023]
Abstract
In March 2017, a wild-caught female common mudpuppy Necturus maculosus from Iowa, USA, with an enlarged posterior abdomen was submitted for diagnostic assessment. The cause of the abdominal distension was a large fluid-filled abdominal mass, diagnosed as a nephroblastoma. Parasites and numerous bacteria were isolated and identified from the mudpuppy but were determined to be incidental. Samples of the neoplasm inoculated onto an American toad Anaxyrus americanus cell line (BufoTad) yielded cytopathic effect during several passages. However, standard molecular testing of the cell culture supernatant failed to identify any viruses. Next-generation sequencing identified the replicating agent as a bacterium of the genus Acholeplasma. Immunohistochemistry confirmed the presence of Acholeplasma within the nephroblastoma, including within tumor cells. This is the first report of nephroblastoma and the second report of neoplasia in this species. The results also suggest that certain bacteria of the genus Acholeplasma might be oncogenic.
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Affiliation(s)
- Isaac Standish
- U.S. Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, Wisconsin, 54650, USA
| | - Eric Leis
- U.S. Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, Wisconsin, 54650, USA
| | - Sara Erickson
- U.S. Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, Wisconsin, 54650, USA
| | - Ryan Katona
- U.S. Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, Wisconsin, 54650, USA
| | - Wes Baumgartner
- College of Veterinary Medicine, Diagnostic Laboratory, University of Illinois, Urbana, Illinois, 61802, USA
| | - Kevin Hanson
- Iowa Department of Natural Resources, Guttenberg Fish Hatchery, Guttenberg, Iowa, 52052, USA
| | - Iman Ibrahim
- Department of Pathology, College of Veterinary Medicine, Mansoura University, Mansoura, 35516, Egypt
| | - Tony Goldberg
- Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, Wisconsin, 53706, USA
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19
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Trimpert J, Eichhorn I, Vladimirova D, Haake A, Schink AK, Klopfleisch R, Lübke-Becker A. Elizabethkingia miricola infection in multiple anuran species. Transbound Emerg Dis 2020; 68:931-940. [PMID: 32745334 DOI: 10.1111/tbed.13761] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Revised: 07/14/2020] [Accepted: 07/28/2020] [Indexed: 11/28/2022]
Abstract
This report describes an outbreak of Elizabethkingia miricola in northern leopard frogs (Lithobates pipiens) and three other species of frogs and toads held in captivity in Germany. The authors examine several treatment options and underline the difficulties in treating larger numbers of individuals with antimicrobials applied through bathing. Whole genome sequencing of three bacterial isolates emphasizes their relatedness to other frog isolates and leads us to conclude that E. miricola is an emerging and difficult to treat pathogen with a broad host range across anuran species. Moreover, ambiguities in identification of flavobacteria associated with disease in frogs reported in the literature make it seem possible that E. miricola has been overlooked as an anuran pathogen in the past.
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Affiliation(s)
- Jakob Trimpert
- Institut für Virologie, Freie Universität Berlin, Berlin, Germany
| | - Inga Eichhorn
- Institut für Mikrobiologie und Tierseuchen, Freie Universität Berlin, Berlin, Germany
| | | | - Alexander Haake
- Institut für Tierpathologie, Freie Universität Berlin, Berlin, Germany
| | - Anne-Kathrin Schink
- Institut für Mikrobiologie und Tierseuchen, Freie Universität Berlin, Berlin, Germany
| | | | - Antina Lübke-Becker
- Institut für Mikrobiologie und Tierseuchen, Freie Universität Berlin, Berlin, Germany
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20
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Standish I, Leis E, Erickson S, McCann R, Puzach C, Katona R, Lark E, Bailey J, Kleman E, Buening J, Edwards C, Loch T, Phillips K. Vagococcus salmoninarum II-qPCR, tropism and egg-associated transmission. JOURNAL OF FISH DISEASES 2020; 43:317-325. [PMID: 32030787 DOI: 10.1111/jfd.13125] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2019] [Revised: 11/18/2019] [Accepted: 11/19/2019] [Indexed: 06/10/2023]
Abstract
Vagococcus salmoninarum was identified as the causative agent of a chronic epizootic in broodstock "coaster" brook trout (Salvelinus fontinalis) at the Iron River National Fish Hatchery. The epizootic spanned more than a year, was unresponsive to multiple florfenicol treatments, and resulted in >50% mortality of the affected fish. The decision was made to cull the remaining fish during spawning, which presented an opportunity to more thoroughly examine V. salmoninarum sampling methods, organ tropism and vertical transmission. A newly developed qPCR targeting the pheS gene was used in concert with bacterial culture to show that V. salmoninarum indeed disproportionately affects females and has a tropism for female reproductive tissues. The study demonstrates that some female reproductive tissues (e.g. ovarian fluid, unfertilized eggs) are also an effective option for non-lethal detection. Despite the widespread presence of V. salmoninarum in ovarian fluid and on egg surfaces, we found no evidence of intra-ova transmission.
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Affiliation(s)
- Isaac Standish
- United States Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, WI, USA
| | - Eric Leis
- United States Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, WI, USA
| | - Sara Erickson
- United States Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, WI, USA
| | - Rebekah McCann
- United States Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, WI, USA
| | - Corey Puzach
- United States Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, WI, USA
| | - Ryan Katona
- United States Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, WI, USA
| | - Ellen Lark
- United States Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, WI, USA
| | - Jennifer Bailey
- United States Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, WI, USA
| | - Eric Kleman
- United States Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, WI, USA
| | - Jorge Buening
- United States Fish and Wildlife Service, Iron River National Fish Hatchery, Iron River, WI, USA
| | - Carey Edwards
- United States Fish and Wildlife Service, Iron River National Fish Hatchery, Iron River, WI, USA
| | - Thomas Loch
- College of Agriculture and Natural Resources, Michigan State University, East Lansing, MI, USA
- College of Veterinary Medicine, Michigan State University, East Lansing, MI, USA
| | - Kenneth Phillips
- United States Fish and Wildlife Service, La Crosse Fish Health Center, Onalaska, WI, USA
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21
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Development of a multiplex real-time PCR surveillance assay for monitoring the health status of Ecuadorian amphibians at risk of extinction. FORENSIC SCIENCE INTERNATIONAL GENETICS SUPPLEMENT SERIES 2019. [DOI: 10.1016/j.fsigss.2019.10.134] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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22
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Xu H, Liu Y, Yan P, He Y, Qin J, Lou J, Zhou W. [Rapid preimplantation genetic diagnosis of α-thalassemia SEA deletion with blastocyst cell whole genome amplification and short fragment Gap-PCR method]. NAN FANG YI KE DA XUE XUE BAO = JOURNAL OF SOUTHERN MEDICAL UNIVERSITY 2018; 38:1250-1254. [PMID: 30377127 DOI: 10.3969/j.issn.1673-4254.2018.10.16] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
OBJECTIVE To develop a rapid preimplantation genetic diagnosis method for α-thalassemia SEA deletion based on blastocyst cell whole genome amplification (WGA) combined with short fragment Gap-PCR. METHODS Using multiple displacement amplification (MDA) WGA technique, we established a double-fluorescent PCR system of the housekeeping genes GAPDH and β-actin for WGA quality testing, and a genotyping PCR system of mutant and normal short sequences for α-thalassemia SEA deletion. The sensitivity and accuracy of this method for diagnosis of α-thalassemia SEA deletion were evaluated by detecting lymphocyte samples containing different cell numbers from carriers of SEA deletion. The applicability of this method was evaluated by testing of 12 blastocyst biopsy samples. RESULTS Detection of lymphocyte samples with different cell numbers using the method developed in this study revealed no ADO in 3-cell samples, and the product quantity of WGA became stable for 4-cell samples. Genotyping of the 10 blastocyst biopsy samples with successful WGA showed a genotype of --SEA/αα in 5 samples and αα/αα in the other 5 samples, which were consistent with the verification results. CONCLUSIONS The method developed in this study is a complete testing process for 4-6 blastocyst biopsy cells to allow rapid, accurate, and cost-effective PGD genotyping of α-thalassemia SEA deletion using short fragment gap-PCR.
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Affiliation(s)
- Huiling Xu
- Department of Medical Genetics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
| | - Yanhui Liu
- Dongguan Maternal and Children's Healthcare Hospital, Dongguan 523122, China
| | - Ping Yan
- Huiqiao Medical Center, Nanfang Hospital, Southern Medical University, Guangzhou 510515, China
| | - Yi He
- Dongguan Maternal and Children's Healthcare Hospital, Dongguan 523122, China
| | - Jiachun Qin
- Department of Medical Genetics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
| | - Jiwu Lou
- Dongguan Maternal and Children's Healthcare Hospital, Dongguan 523122, China
| | - Wanjun Zhou
- Department of Medical Genetics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
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23
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Leis E, McCann R, Standish I, Bestul A, Odom T, Finnerty C, Bennie B. Comparison of Lethal and Nonlethal Sampling Methods for the Detection of Largemouth Bass Virus (LMBV) from Largemouth Bass in the Upper Mississippi River. JOURNAL OF AQUATIC ANIMAL HEALTH 2018; 30:217-225. [PMID: 30040163 DOI: 10.1002/aah.10029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Accepted: 05/20/2018] [Indexed: 06/08/2023]
Abstract
Traditional methodologies to identify fish pathogens require euthanasia before the collection of tissue samples. While these methods are standardized and proven, there are instances where nonlethal alternatives would be preferred. Despite the need to develop nonlethal sampling techniques, few publications have focused on them and even fewer have used these approaches to identify viruses from infections occurring in wild fish populations. In this study, we compared the ability of nonlethal sampling techniques with traditional methods for the detection of Largemouth Bass virus (LMBV) from a wild population of Largemouth Bass Micropterus salmoides from the upper Mississippi River. Largemouth bass virus was isolated from 30% of the Largemouth Bass sampled using traditional methods where tissue samples were inoculated on Bluegill fry (BF-2) cells. Furthermore, when using tissue cell culture to isolate LMBV, there was no significant difference observed in the overall proportion that was positive between the mucus samples and the kidney and spleen samples. Mucus swabs analyzed with molecular methods (conventional PCR and quantitative PCR) were more sensitive than traditional tissue cell culture-based methods as they detected LMBV from >70% of the samples; limitations to these methods (i.e., carryover contamination) were also identified. The results of this study suggest that nonlethal sampling may be a useful option for detecting LMBV from fish populations.
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Affiliation(s)
- Eric Leis
- U.S. Fish and Wildlife Service, Midwest Fisheries Center, La Crosse Fish Health Center, 555 Lester Avenue, Onalaska, Wisconsin, 54650, USA
| | - Rebekah McCann
- U.S. Fish and Wildlife Service, Midwest Fisheries Center, La Crosse Fish Health Center, 555 Lester Avenue, Onalaska, Wisconsin, 54650, USA
| | - Isaac Standish
- U.S. Fish and Wildlife Service, Midwest Fisheries Center, La Crosse Fish Health Center, 555 Lester Avenue, Onalaska, Wisconsin, 54650, USA
| | - Anna Bestul
- Biology Department, Winona State University, 175 West Mark Street, Winona, Minnesota, 55987, USA
| | - Torri Odom
- Biology Department, Winona State University, 175 West Mark Street, Winona, Minnesota, 55987, USA
| | - Casey Finnerty
- Biology Department, Winona State University, 175 West Mark Street, Winona, Minnesota, 55987, USA
| | - Barb Bennie
- Department of Mathematics and Statistics, University of Wisconsin-La Crosse, 1725 State Street, La Crosse, Wisconson, 54601, USA
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