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Li M, Wan X, Rong C, Zhao D, Liu S. Directionality and additivity effects of molecular acidity and aromaticity for substituted benzoic acids under external electric fields. Phys Chem Chem Phys 2023; 25:27805-27816. [PMID: 37814823 DOI: 10.1039/d3cp02982d] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/11/2023]
Abstract
Our recent study [M. Li et al.Phys. Chem. Chem. Phys., 2023, 25, 2595-2605] unveiled that the impact of an external electric field on molecular acidity and aromaticity for benzoic acid is directional, which can be understood using changes in frontier orbitals and partial charges. However, it is unclear if the effect will disappear when substituting groups are present and whether new patterns of changes will show up. In this work, as a continuation of our efforts to appreciate the impact of external electric fields on physiochemical properties, we find that the directionality effect is still in place for substituted benzoic acid derivatives and that there exists the additivity effect with respect to the number of substituent groups, regardless of the direction of the applied field and the type of substituting groups. We confirm the findings using electron-donating and electron-accepting groups with the electric field applied either parallelly or perpendicularly to the carboxyl group along the benzene ring. The directionality and additivity effects uncovered from this work should enrich the body of our knowledge about the impact of external electric fields on physiochemical properties and could be applicable to other systems and properties as well.
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Affiliation(s)
- Meng Li
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), Hunan Normal University, Changsha, Hunan 410081, P. R. China.
| | - Xinjie Wan
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), Hunan Normal University, Changsha, Hunan 410081, P. R. China.
| | - Chunying Rong
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), Hunan Normal University, Changsha, Hunan 410081, P. R. China.
| | - Dongbo Zhao
- Institute of Biomedical Research, Yunnan University, Kunming 650500, P. R. China.
| | - Shubin Liu
- Research Computing Center, University of North Carolina, Chapel Hill, NC 27599-3420, USA.
- Department of Chemistry, University of North Carolina, Chapel Hill, NC 27599-3290, USA
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Yanes-Rodríguez R, Prosmiti R. Computational investigations of stable multiple-cage-occupancy He clathrate-like hydrostructures. Phys Chem Chem Phys 2023. [PMID: 37314248 DOI: 10.1039/d3cp00603d] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
One of the several possibilities offered by the interesting clathrate hydrates is the opportunity to encapsulate several atoms or molecules, in such a way that more efficient storage materials could be explored or new molecules that otherwise do not exist could be created. These types of applications are receiving growing attention from technologists and chemists, given the future positive implications that they entail. In this context, we investigated the multiple cage occupancy of helium clathrate hydrates, to establish stable novel hydrate structures or ones similar to those predicted previously by experimental and theoretical studies. To this purpose, we analyzed the feasibility of including an increased number of He atoms inside the small (D) and large (H) cages of the sII structure through first-principles properly assessed density functional approaches. On the one hand, we have computed energetic and structural properties, in which we examined the guest-host and guest-guest interactions in both individual and two-adjacent clathrate-like sII cages by means of binding and evaporation energies. On the other hand, we have carried out a thermodynamical analysis on the stability of such He-containing hydrostructures in terms of changes in enthalpy, ΔH, Gibbs free energy, ΔG, and entropy, ΔS, during their formation process at various temperature and pressure values. In this way, we have been able to make a comparison with experiments, reaffirming the ability of computational DFT approaches to describe such weak guest-host interactions. In principle, the most stable structure involves the encapsulation of one and four He atoms inside the D and H sII cages, respectively; however, more He atoms could be entrapped under lower temperature and/or higher pressure thermodynamic conditions. We foresee such accurate computational quantum chemistry approaches contributing to the current emerging machine-learning model development.
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Affiliation(s)
- Raquel Yanes-Rodríguez
- Institute of Fundamental Physics (IFF-CSIC), CSIC, Serrano 123, 28006 Madrid, Spain.
- Doctoral Programme in Theoretical Chemistry and Computational Modelling, Doctoral School, Universidad Autónoma de Madrid, Spain
| | - Rita Prosmiti
- Institute of Fundamental Physics (IFF-CSIC), CSIC, Serrano 123, 28006 Madrid, Spain.
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Li M, Wan X, He X, Rong C, Liu S. Impacts of external fields on aromaticity and acidity of benzoic acid: a density functional theory, conceptual density functional theory and information-theoretic approach study. Phys Chem Chem Phys 2023; 25:2595-2605. [PMID: 36602177 DOI: 10.1039/d2cp04557e] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The impact of external fields on the molecular structure and reactivity properties has been of considerable interest in the recent literature. Benzoic acid as one of the most widely used compounds in medicinal and materials sciences is known for its dual propensity in aromaticity and acidity. In this work, we systematically investigate the impact of a uniform external electric field on these properties. We apply density functional theory, conceptual density functional theory, and an information-theoretic approach to appreciate the change pattern of aromaticity and acidity properties in external fields with different strengths. Our results show that they possess different change patterns under external fields, which can be satisfactorily rationalized by variations in reactivity descriptors and partial charges. The surprising yet novel results from this study should enrich the body of our knowledge about the impact of external fields for different kinds of electronic properties and provide guidance and foundation for future studies of this phenomenon in other molecular systems.
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Affiliation(s)
- Meng Li
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Ministry of Education of China), Hunan Normal University, Changsha, Hunan 410081, P. R. China.
| | - Xinjie Wan
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Ministry of Education of China), Hunan Normal University, Changsha, Hunan 410081, P. R. China.
| | - Xin He
- Qingdao Institute for Theoretical and Computational Sciences, Institute of Frontier and Interdisciplinary Science, Shandong University, Qingdao, Shandong 266237, P. R. China
| | - Chunying Rong
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Ministry of Education of China), Hunan Normal University, Changsha, Hunan 410081, P. R. China.
| | - Shubin Liu
- Research Computing Center, University of North Carolina, Chapel Hill, NC 27599-3420, USA. .,Department of Chemistry, University of North Carolina, Chapel Hill, NC 27599-3290, USA
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Parsa H, Shakerzadeh E, Anota EC. Ng n (Ng= Ne, Ar, Kr, Xe, and Rn; n=1, 2) encapsulated porphyrin-like porous C 24N 24 fullerene: A quantum chemical study. J Mol Graph Model 2021; 108:107986. [PMID: 34303179 DOI: 10.1016/j.jmgm.2021.107986] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 07/06/2021] [Accepted: 07/07/2021] [Indexed: 11/18/2022]
Abstract
This study focused on the theoretical viability of Ngn@C24N24 (Ng = Ne, Ar, Kr, Xe, and Rn; n = 1, 2) complexes using density functional theory at the computational level of ωB97X-D/def2-TZVP. Thermodynamic and kinetic stabilities of these complexes have been evaluated by calculating the interaction energy of Ng atoms encapsulated C24N24 cage (ΔEint), and the corresponding dissociation energy barrier (ΔG‡), respectively. The obtained results predict that although these complexes are thermodynamically unstable compared to their dissociation into free Ng atoms and the bare C24N24 cage, but once formed, they are protected by the activation energy barrier of the corresponding dissociation process. Furthermore, natural population analysis (NPA) and topological analysis of the electron density have been employed to investigate the nature of Ng-Ng and Ng-cage interactions. The results demonstrate that these interactions are highly significant compared to similar cases in the free state; and the amounts of energy of the interaction gradually increases as the Ng atom becomes heavier. Surprisingly in the Kr2@C24N24 complex the Kr-Kr bond is somewhat covalent in nature relative to non-bonded interaction in Kr2 free dimer.
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Affiliation(s)
- Hadi Parsa
- Department of Chemistry, Faculty of Science, University of Kurdistan, Sanandaj, Iran.
| | - Ehsan Shakerzadeh
- Chemistry Department, Faculty of Science, Shahid Chamran University of Ahvaz, Ahvaz, Iran.
| | - Ernesto Chigo Anota
- Benemérita Universidad Autónoma de Puebla, Facultad de Ingeniería Química, Ciudad Universitaria, San Manuel, Puebla, Código Postal, 72570, Mexico
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Lo R, Lamanec M, Wang W, Manna D, Bakandritsos A, Dračínský M, Zbořil R, Nachtigallová D, Hobza P. Structure-directed formation of the dative/covalent bonds in complexes with C 70piperidine. Phys Chem Chem Phys 2021; 23:4365-4375. [PMID: 33589890 DOI: 10.1039/d0cp06280d] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
The combined experimental-computational study has been performed to investigate the complexes formed between C70 carbon allotrope and piperidine. The results of FT-IR, H-NMR, and C-NMR measurements, together with the calculations based on the DFT approach and molecular dynamics simulations, prove the existence of dative/covalent bonding in C70piperidine complexes. The dative bond forms not only at the region of five- and six-membered rings, observed previously with C60, but also at the region formed of six-membered rings. The structure, i.e., nonplanarity, explains the observed dative bond formation. New findings on the character of interaction of secondary amines with C70 bring new aspects for the rational design of modified fullerenes and their applications in electrocatalysis, spintronics, and energy storage.
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Affiliation(s)
- Rabindranath Lo
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo Námstí 542/2, 16000 Prague, Czech Republic. and CATRIN, Palacký University, Šlechtitelů 27, 78371 Olomouc, Czech Republic
| | - Maximilián Lamanec
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo Námstí 542/2, 16000 Prague, Czech Republic. and Department of Physical Chemistry, Palacký University Olomouc, Tr. 17 listopadu 12, 771 46 Olomouc, Czech Republic
| | - Weizhou Wang
- College of Chemistry and Chemical Engineering, and Henan Key Laboratory of Function-Oriented Porous Materials, Luoyang Normal University, Luoyang 471934, China
| | - Debashree Manna
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo Námstí 542/2, 16000 Prague, Czech Republic. and CATRIN, Palacký University, Šlechtitelů 27, 78371 Olomouc, Czech Republic
| | - Aristides Bakandritsos
- CATRIN, Palacký University, Šlechtitelů 27, 78371 Olomouc, Czech Republic and Regional Centre of Advanced Technologies and Materials, Palacký University, Olomouc, Šlechtitelů 27, 78371, Czech Republic
| | - Martin Dračínský
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo Námstí 542/2, 16000 Prague, Czech Republic.
| | - Radek Zbořil
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo Námstí 542/2, 16000 Prague, Czech Republic. and CATRIN, Palacký University, Šlechtitelů 27, 78371 Olomouc, Czech Republic and Regional Centre of Advanced Technologies and Materials, Palacký University, Olomouc, Šlechtitelů 27, 78371, Czech Republic and Nanotechnology Centre, VŠB-Technical University of Ostrava, 17. Listopadu 2172/15, 708 00 Ostrava-Poruba, Czech Republic
| | - Dana Nachtigallová
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo Námstí 542/2, 16000 Prague, Czech Republic. and CATRIN, Palacký University, Šlechtitelů 27, 78371 Olomouc, Czech Republic
| | - Pavel Hobza
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo Námstí 542/2, 16000 Prague, Czech Republic. and CATRIN, Palacký University, Šlechtitelů 27, 78371 Olomouc, Czech Republic
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