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Wang H, Huang H, Wu J, Li N, Gu K, Wu X. Semi-supervised segmentation of cardiac chambers from LGE-CMR using feature consistency awareness. BMC Cardiovasc Disord 2024; 24:571. [PMID: 39420256 PMCID: PMC11484209 DOI: 10.1186/s12872-024-04250-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2024] [Accepted: 10/10/2024] [Indexed: 10/19/2024] Open
Abstract
BACKGROUND Late gadolinium enhancement cardiac magnetic resonance imaging (LGE-CMR) is a valuable cardiovascular imaging technique. Segmentation of cardiac chambers from LGE-CMR is a fundamental step in electrophysiological modeling and cardiovascular disease diagnosis. Deep learning methods have demonstrated extremely promising performance. However, excellent performance often depended on a large amount of finely annotated data. The purpose of this manuscript was to develop a semi-supervised segmentation method to use unlabeled data to improve model performance. METHODS This manuscript proposed a semi-supervised network that integrates triple-consistency constraints (data-level, task-level, and feature-level) for cardiac chambers segmentation from LGE-CMR. Specifically, we designed a network that integrated segmentation and edge prediction tasks based on the mean teacher architecture. This addressed the problem of ignoring some challenging regions because of excluding low-confidence regions of previous research. We also applied a voxel-level contrastive learning strategy to achieve feature-level consistency, helping the model pay attention to the consistency between features overlooked in previous research. RESULTS In terms of the Dice, Jaccard, Average Surface Distance (ASD), and 95% Hausdorff Distance (95HD) metrics, for the atrial segmentation dataset, the proposed method achieved scores of 88.34%, 79.30%, 7.92, and 2.02 when trained with 10% labeled data, and 90.70%, 83.09%, 6.41, and 1.72 when trained with 20% labeled data. For the ventricular segmentation task, the results were 87.22%, 77.95%, 2.27, and 0.61 with 10% labeled data, and 88.99%, 80.45%, 1.87, and 0.51 with 20% labeled data, respectively. CONCLUSION Experiments demonstrated that our method outperforms previous semi-supervised methods, showing the potential of the proposed network for semi-supervised segmentation problems.
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Affiliation(s)
- Hairui Wang
- Department of Biomedical Engineering, School of information Science and Technology, Fudan University, Shanghai, 200433, China
| | - Helin Huang
- Department of Biomedical Engineering, School of information Science and Technology, Fudan University, Shanghai, 200433, China
| | - Jing Wu
- Department of Biomedical Engineering, School of information Science and Technology, Fudan University, Shanghai, 200433, China
| | - Nan Li
- Department of Biomedical Engineering, School of information Science and Technology, Fudan University, Shanghai, 200433, China
| | - Kaihao Gu
- Department of Biomedical Engineering, School of information Science and Technology, Fudan University, Shanghai, 200433, China.
| | - Xiaomei Wu
- Department of Biomedical Engineering, School of information Science and Technology, Fudan University, Shanghai, 200433, China.
- Academy for Engineering and Technology, Fudan University, Fudan University, Shanghai, 200433, China.
- Yiwu Research Institute of Fudan University, Yiwu, Zhejiang, 322000, China.
- Key Laboratory of Medical Imaging Computing and Computer Assisted Intervention (MICCAI) of Shanghai, Shanghai, 200433, China.
- Shanghai Engineering Research Center of Assistive Devices, Shanghai, 200433, China.
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Hsu JL, Singaravelan A, Lai CY, Li ZL, Lin CN, Wu WS, Kao TW, Chu PL. Applying a Deep Learning Model for Total Kidney Volume Measurement in Autosomal Dominant Polycystic Kidney Disease. Bioengineering (Basel) 2024; 11:963. [PMID: 39451339 PMCID: PMC11504157 DOI: 10.3390/bioengineering11100963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2024] [Revised: 09/23/2024] [Accepted: 09/24/2024] [Indexed: 10/26/2024] Open
Abstract
BACKGROUND Autosomal dominant polycystic kidney disease (ADPKD) is the most common hereditary renal disease leading to end-stage renal disease. Total kidney volume (TKV) measurement has been considered as a surrogate in the evaluation of disease severity and prognostic predictor of ADPKD. However, the traditional manual measurement of TKV by medical professionals is labor-intensive, time-consuming, and human error prone. MATERIALS AND METHODS In this investigation, we conducted TKV measurements utilizing magnetic resonance imaging (MRI) data. The dataset consisted of 30 patients with ADPKD and 10 healthy individuals. To calculate TKV, we trained models using both coronal- and axial-section MRI images. The process involved extracting images in Digital Imaging and Communications in Medicine (DICOM) format, followed by augmentation and labeling. We employed a U-net model for image segmentation, generating mask images of the target areas. Subsequent post-processing steps and TKV estimation were performed based on the outputs obtained from these mask images. RESULTS The average TKV, as assessed by medical professionals from the testing dataset, was 1501.84 ± 965.85 mL with axial-section images and 1740.31 ± 1172.21 mL with coronal-section images, respectively (p = 0.73). Utilizing the deep learning model, the mean TKV derived from axial- and coronal-section images was 1536.33 ± 958.68 mL and 1636.25 ± 964.67 mL, respectively (p = 0.85). The discrepancy in mean TKV between medical professionals and the deep learning model was 44.23 ± 58.69 mL with axial-section images (p = 0.8) and 329.12 ± 352.56 mL with coronal-section images (p = 0.9), respectively. The average variability in TKV measurement was 21.6% with the coronal-section model and 3.95% with the axial-section model. The axial-section model demonstrated a mean Dice Similarity Coefficient (DSC) of 0.89 ± 0.27 and an average patient-wise Jaccard coefficient of 0.86 ± 0.27, while the mean DSC and Jaccard coefficient of the coronal-section model were 0.82 ± 0.29 and 0.77 ± 0.31, respectively. CONCLUSION The integration of deep learning into image processing and interpretation is becoming increasingly prevalent in clinical practice. In our pilot study, we conducted a comparative analysis of the performance of a deep learning model alongside corresponding axial- and coronal-section models, a comparison that has been less explored in prior research. Our findings suggest that our deep learning model for TKV measurement performs comparably to medical professionals. However, we observed that varying image orientations could introduce measurement bias. Specifically, our AI model exhibited superior performance with axial-section images compared to coronal-section images.
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Affiliation(s)
- Jia-Lien Hsu
- Department of Computer Science and Information Engineering, Fu Jen Catholic University, New Taipei City 24205, Taiwan; (J.-L.H.)
| | - Anandakumar Singaravelan
- Graduate Institute of Applied Science and Engineering, Fu Jen Catholic University, New Taipei City 24205, Taiwan;
| | - Chih-Yun Lai
- Department of Internal Medicine, Fu Jen Catholic University Hospital, Fu Jen Catholic University, New Taipei City 24205, Taiwan
| | - Zhi-Lin Li
- Department of Computer Science and Information Engineering, Fu Jen Catholic University, New Taipei City 24205, Taiwan; (J.-L.H.)
| | - Chia-Nan Lin
- Department of Medical Imaging, Fu Jen Catholic University Hospital, New Taipei City 24352, Taiwan
| | - Wen-Shuo Wu
- Department of Computer Science and Information Engineering, Fu Jen Catholic University, New Taipei City 24205, Taiwan; (J.-L.H.)
| | - Tze-Wah Kao
- Department of Internal Medicine, Fu Jen Catholic University Hospital, Fu Jen Catholic University, New Taipei City 24205, Taiwan
- School of Medicine, College of Medicine, Fu Jen Catholic University, New Taipei City 24205, Taiwan
| | - Pei-Lun Chu
- Department of Internal Medicine, Fu Jen Catholic University Hospital, Fu Jen Catholic University, New Taipei City 24205, Taiwan
- PhD Program in Pharmaceutical Biotechnology, Fu Jen Catholic University, New Taipei City 24205, Taiwan
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Khelimskii D, Badoyan A, Krymcov O, Baranov A, Manukian S, Lazarev M. AI in interventional cardiology: Innovations and challenges. Heliyon 2024; 10:e36691. [PMID: 39281582 PMCID: PMC11402142 DOI: 10.1016/j.heliyon.2024.e36691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Revised: 08/08/2024] [Accepted: 08/20/2024] [Indexed: 09/18/2024] Open
Abstract
Artificial Intelligence (AI) permeates all areas of our lives. Even now, we all use AI algorithms in our daily activities, and medicine is no exception. The potential of AI technology is hard to overestimate; AI has already proven its effectiveness in many fields of science and technology. A vast number of methods have been proposed and are being implemented in various areas of medicine, including interventional cardiology. A hallmark of this discipline is the extensive use of visualization techniques not only for diagnosis but also for the treatment of patients with coronary heart disease. The implementation of instrumental AI will reduce costs, in a broad sense. In this article, we provide an overview of AI research in interventional cardiology, practical applications, as well as the problems hindering the widespread use of neural network technologies in interventional cardiology.
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Affiliation(s)
- Dmitrii Khelimskii
- Meshalkin National Medical Research Center, Ministry of Health of Russian Federation, Novosibirsk, Russian Federation
| | - Aram Badoyan
- Meshalkin National Medical Research Center, Ministry of Health of Russian Federation, Novosibirsk, Russian Federation
| | - Oleg Krymcov
- Meshalkin National Medical Research Center, Ministry of Health of Russian Federation, Novosibirsk, Russian Federation
| | - Aleksey Baranov
- Meshalkin National Medical Research Center, Ministry of Health of Russian Federation, Novosibirsk, Russian Federation
| | - Serezha Manukian
- Meshalkin National Medical Research Center, Ministry of Health of Russian Federation, Novosibirsk, Russian Federation
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Qin C, Wang Y, Zhang J. URCA: Uncertainty-based region clipping algorithm for semi-supervised medical image segmentation. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2024; 254:108278. [PMID: 38878360 DOI: 10.1016/j.cmpb.2024.108278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 05/24/2024] [Accepted: 06/06/2024] [Indexed: 07/28/2024]
Abstract
BACKGROUND AND OBJECTIVE Training convolutional neural networks based on large amount of labeled data has made great progress in the field of image segmentation. However, in medical image segmentation tasks, annotating the data is expensive and time-consuming because pixel-level annotation requires experts in the relevant field. Currently, the combination of consistent regularization and pseudo labeling-based semi-supervised methods has shown good performance in image segmentation. However, in the training process, a portion of low-confidence pseudo labels are generated by the model. And the semi-supervised segmentation method still has the problem of distribution bias between labeled and unlabeled data. The objective of this study is to address the challenges of semi-supervised learning and improve the segmentation accuracy of semi-supervised models on medical images. METHODS To address these issues, we propose an Uncertainty-based Region Clipping Algorithm for semi-supervised medical image segmentation, which consists of two main modules. A module is introduced to compute the uncertainty of two sub-networks predictions with diversity using Monte Carlo Dropout, allowing the model to gradually learn from more reliable targets. To retain model diversity, we use different loss functions for different branches and use Non-Maximum Suppression in one of the branches. The other module is proposed to generate new samples by masking the low-confidence pixels in the original image based on uncertainty information. New samples are fed into the model to facilitate the model to generate pseudo labels with high confidence and enlarge the training data distribution. RESULTS Comprehensive experiments on the combination of two benchmarks ACDC and BraTS2019 show that our proposed model outperforms state-of-the-art methods in terms of Dice, HD95 and ASD. The results reach an average Dice score of 87.86 % and a HD95 score of 4.214 mm on ACDC dataset. For the brain tumor segmentation, the results reach an average Dice score of 84.79 % and a HD score of 10.13 mm. CONCLUSIONS Our proposed method improves the accuracy of semi-supervised medical image segmentation. Extensive experiments on two public medical image datasets including 2D and 3D modalities demonstrate the superiority of our model. The code is available at: https://github.com/QuintinDong/URCA.
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Affiliation(s)
- Chendong Qin
- University of Shanghai for Science and Technology, School of Opto-Electronic Information and Computer Engineering, Department of Control Science and Engineering, 516 War Industrial Road, Shanghai 200093, China
| | - Yongxiong Wang
- University of Shanghai for Science and Technology, School of Opto-Electronic Information and Computer Engineering, Department of Control Science and Engineering, 516 War Industrial Road, Shanghai 200093, China.
| | - Jiapeng Zhang
- University of Shanghai for Science and Technology, School of Opto-Electronic Information and Computer Engineering, Department of Control Science and Engineering, 516 War Industrial Road, Shanghai 200093, China
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Reza-Soltani S, Fakhare Alam L, Debellotte O, Monga TS, Coyalkar VR, Tarnate VCA, Ozoalor CU, Allam SR, Afzal M, Shah GK, Rai M. The Role of Artificial Intelligence and Machine Learning in Cardiovascular Imaging and Diagnosis. Cureus 2024; 16:e68472. [PMID: 39360044 PMCID: PMC11446464 DOI: 10.7759/cureus.68472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/02/2024] [Indexed: 10/04/2024] Open
Abstract
Cardiovascular diseases remain the leading cause of global mortality, underscoring the critical need for accurate and timely diagnosis. This narrative review examines the current applications and future potential of artificial intelligence (AI) and machine learning (ML) in cardiovascular imaging. We discuss the integration of these technologies across various imaging modalities, including echocardiography, computed tomography, magnetic resonance imaging, and nuclear imaging techniques. The review explores AI-assisted diagnosis in key areas such as coronary artery disease detection, valve disorders assessment, cardiomyopathy classification, arrhythmia detection, and prediction of cardiovascular events. AI demonstrates promise in improving diagnostic accuracy, efficiency, and personalized care. However, significant challenges persist, including data quality standardization, model interpretability, regulatory considerations, and clinical workflow integration. We also address the limitations of current AI applications and the ethical implications of their implementation in clinical practice. Future directions point towards advanced AI architectures, multimodal imaging integration, and applications in precision medicine and population health management. The review emphasizes the need for ongoing collaboration between clinicians, data scientists, and policymakers to realize the full potential of AI in cardiovascular imaging while ensuring ethical and equitable implementation. As the field continues to evolve, addressing these challenges will be crucial for the successful integration of AI technologies into cardiovascular care, potentially revolutionizing diagnostic capabilities and improving patient outcomes.
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Affiliation(s)
- Setareh Reza-Soltani
- Advanced Diagnostic & Interventional Radiology Center (ADIR), Tehran University of Medical Sciences, Tehran, IRN
| | | | - Omofolarin Debellotte
- Internal Medicine, One Brooklyn Health-Brookdale Hospital Medical Center, Brooklyn, USA
| | - Tejbir S Monga
- Internal Medicine, Spartan Health Sciences University, Vieux Fort, LCA
| | | | | | | | | | - Maham Afzal
- Medicine, Fatima Jinnah Medical University, Lahore, PAK
| | | | - Manju Rai
- Biotechnology, Shri Venkateshwara University, Gajraula, IND
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Khangembam BC, Jaleel J, Roy A, Gupta P, Patel C. A Novel Approach to Identifying Hibernating Myocardium Using Radiomics-Based Machine Learning. Cureus 2024; 16:e69532. [PMID: 39416566 PMCID: PMC11482292 DOI: 10.7759/cureus.69532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/15/2024] [Indexed: 10/19/2024] Open
Abstract
Background To assess the feasibility of a machine learning (ML) approach using radiomics features of perfusion defects on rest myocardial perfusion imaging (MPI) to detect the presence of hibernating myocardium. Methodology Data of patients who underwent 99mTc-sestamibi MPI and 18F-FDG PET/CT for myocardial viability assessment were retrieved. Rest MPI data were processed on ECToolbox, and polar maps were saved using the NFile PMap tool. The reference standard for defining hibernating myocardium was the presence of mismatched perfusion-metabolism defect with impaired myocardial contractility at rest. Perfusion defects on the polar maps were delineated with regions of interest (ROIs) after spatial resampling and intensity discretization. Replicable random sampling allocated 80% (257) of the perfusion defects of the patients from January 2017 to September 2022 to the training set and the remaining 20% (64) to the validation set. An independent dataset of perfusion defects from 29 consecutive patients from October 2022 to January 2023 was used as the testing set for model evaluation. One hundred ten first and second-order texture features were extracted for each ROI. After feature normalization and imputation, 14 best-ranked features were selected using a multistep feature selection process including the Logistic Regression and Fast Correlation-Based Filter. Thirteen supervised ML algorithms were trained with stratified five-fold cross-validation on the training set and validated on the validation set. The ML algorithms with a Log Loss of <0.688 and <0.672 in the cross-validation and validation steps were evaluated on the testing set. Performance matrices of the algorithms assessed included area under the curve (AUC), classification accuracy (CA), F1 score, precision, recall, and specificity. To provide transparency and interpretability, SHapley Additive exPlanations (SHAP) values were assessed and depicted as beeswarm plots. Results Two hundred thirty-nine patients (214 males; mean age 56 ± 11 years) were enrolled in the study. There were 371 perfusion defects (321 in the training and validation sets; 50 in the testing set). Based on the reference standard, 168 perfusion defects had hibernating myocardium (139 in the training and validation sets; 29 in the testing set). On cross-validation, six ML algorithms with Log Loss <0.688 had AUC >0.800. On validation, 10 ML algorithms had a Log Loss value <0.672, among which six had AUC >0.800. On model evaluation of the selected models on the unseen testing set, nine ML models had AUC >0.800 with Gradient Boosting Random Forest (xgboost) [GB RF (xgboost)] achieving the highest AUC of 0.860 and could detect the presence of hibernating myocardium in 21/29 (72.4%) perfusion defects with a precision of 87.5% (21/24), specificity 85.7% (18/21), CA 78.0% (39/50) and F1 Score 0.792. Four models depicted a clear pattern of model interpretability based on the beeswarm SHAP plots. These were GB RF (xgboost), GB (scikit-learn), GB (xgboost), and Random Forest. Conclusion Our study demonstrates the potential of ML in detecting hibernating myocardium using radiomics features extracted from perfusion defects on rest MPI images. This proof-of-concept underscores the notion that radiomics features capture nuanced information beyond what is perceptible to the human eye, offering promising avenues for improved myocardial viability assessment.
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Affiliation(s)
| | - Jasim Jaleel
- Nuclear Medicine, Institute of Liver and Biliary Sciences, New Delhi, IND
| | - Arup Roy
- Nuclear Medicine, All India Institute of Medical Sciences, New Delhi, IND
| | - Priyanka Gupta
- Nuclear Medicine, All India Institute of Medical Sciences, New Delhi, IND
| | - Chetan Patel
- Nuclear Medicine, All India Institute of Medical Sciences, New Delhi, IND
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7
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Keles A, Ozisik PA, Algin O, Celebi FV, Bendechache M. Decoding pulsatile patterns of cerebrospinal fluid dynamics through enhancing interpretability in machine learning. Sci Rep 2024; 14:17854. [PMID: 39090141 PMCID: PMC11294568 DOI: 10.1038/s41598-024-67928-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Accepted: 07/17/2024] [Indexed: 08/04/2024] Open
Abstract
Analyses of complex behaviors of Cerebrospinal Fluid (CSF) have become increasingly important in diseases diagnosis. The changes of the phase-contrast magnetic resonance imaging (PC-MRI) signal formed by the velocity of flowing CSF are represented as a set of velocity-encoded images or maps, which can be thought of as signal data in the context of medical imaging, enabling the evaluation of pulsatile patterns throughout a cardiac cycle. However, automatic segmentation of the CSF region in a PC-MRI image is challenging, and implementing an explained ML method using pulsatile data as a feature remains unexplored. This paper presents lightweight machine learning (ML) algorithms to perform CSF lumen segmentation in spinal, utilizing sets of velocity-encoded images or maps as a feature. The Dataset contains 57 PC-MRI slabs by 3T MRI scanner from control and idiopathic scoliosis participants are involved to collect data. The ML models are trained with 2176 time series images. Different cardiac periods image (frame) numbers of PC-MRIs are interpolated in the preprocessing step to align to features of equal size. The fivefold cross-validation procedure is used to estimate the success of the ML models. Additionally, the study focusses on enhancing the interpretability of the highest-accuracy eXtreme gradient boosting (XGB) model by applying the shapley additive explanations (SHAP) technique. The XGB algorithm presented its highest accuracy, with an average fivefold accuracy of 0.99% precision, 0.95% recall, and 0.97% F1 score. We evaluated the significance of each pulsatile feature's contribution to predictions, offering a more profound understanding of the model's behavior in distinguishing CSF lumen pixels with SHAP. Introducing a novel approach in the field, develop ML models offer comprehension into feature extraction and selection from PC-MRI pulsatile data. Moreover, the explained ML model offers novel and valuable insights to domain experts, contributing to an enhanced scholarly understanding of CSF dynamics.
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Affiliation(s)
- Ayse Keles
- Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Ankara Medipol University, Ankara, Turkey.
| | - Pinar Akdemir Ozisik
- Department of Neurosurgery, School of Medicine, Ankara Yildirim Beyazit University, Ankara, Turkey
- Ankara City Hospital, Orthopedics and Neurology Tower, Bilkent, 06800, Ankara, Turkey
| | - Oktay Algin
- Interventional MR Clinical R&D Institute, Ankara University, Ankara, Turkey
- National MR Research Center (UMRAM), Bilkent University, Ankara, Turkey
- Radiology Department, Medical Faculty, Ankara University, Ankara, Turkey
| | - Fatih Vehbi Celebi
- Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Ankara Yildirim Beyazit University, 06010, Ayvalı, Keçiören, Ankara, Turkey
| | - Malika Bendechache
- Lero and ADAPT Research Centres, School of Computer Science, University of Galway, Galway, Ireland
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Lekadir K. A deep learning solution to detect left ventricular structural abnormalities with chest X-rays: towards trustworthy AI in cardiology. Eur Heart J 2024:ehad775. [PMID: 38527415 DOI: 10.1093/eurheartj/ehad775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 03/27/2024] Open
Affiliation(s)
- Karim Lekadir
- University of Barcelona, Department of Mathematics and Computer Science, Artificial Intelligence in Medicine Lab (BCN-AIM), Barcelona, Spain
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Shoaib M, Junaid A, Husnain G, Qadir M, Ghadi YY, Askar SS, Abouhawwash M. Advanced detection of coronary artery disease via deep learning analysis of plasma cytokine data. Front Cardiovasc Med 2024; 11:1365481. [PMID: 38525188 PMCID: PMC10957635 DOI: 10.3389/fcvm.2024.1365481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Accepted: 02/19/2024] [Indexed: 03/26/2024] Open
Abstract
The 2017 World Health Organization Fact Sheet highlights that coronary artery disease is the leading cause of death globally, responsible for approximately 30% of all deaths. In this context, machine learning (ML) technology is crucial in identifying coronary artery disease, thereby saving lives. ML algorithms can potentially analyze complex patterns and correlations within medical data, enabling early detection and accurate diagnosis of CAD. By leveraging ML technology, healthcare professionals can make informed decisions and implement timely interventions, ultimately leading to improved outcomes and potentially reducing the mortality rate associated with coronary artery disease. Machine learning algorithms create non-invasive, quick, accurate, and economical diagnoses. As a result, machine learning algorithms can be employed to supplement existing approaches or as a forerunner to them. This study shows how to use the CNN classifier and RNN based on the LSTM classifier in deep learning to attain targeted "risk" CAD categorization utilizing an evolving set of 450 cytokine biomarkers that could be used as suggestive solid predictive variables for treatment. The two used classifiers are based on these "45" different cytokine prediction characteristics. The best Area Under the Receiver Operating Characteristic curve (AUROC) score achieved is (0.98) for a confidence interval (CI) of 95; the classifier RNN-LSTM used "450" cytokine biomarkers had a great (AUROC) score of 0.99 with a confidence interval of 0.95 the percentage 95, the CNN model containing cytokines received the second best AUROC score (0.92). The RNN-LSTM classifier considerably beats the CNN classifier regarding AUROC scores, as evidenced by a p-value smaller than 7.48 obtained via an independent t-test. As large-scale initiatives to achieve early, rapid, reliable, inexpensive, and accessible individual identification of CAD risk gain traction, robust machine learning algorithms can now augment older methods such as angiography. Incorporating 65 new sensitive cytokine biomarkers can increase early detection even more. Investigating the novel involvement of cytokines in CAD could lead to better risk detection, disease mechanism discovery, and new therapy options.
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Affiliation(s)
- Muhammad Shoaib
- Department of Computer Science, CECOS University of IT and Emerging Sciences, Peshawar, Pakistan
| | - Ahmad Junaid
- Department of Computer Science, CECOS University of IT and Emerging Sciences, Peshawar, Pakistan
| | - Ghassan Husnain
- Department of Computer Science, CECOS University of IT and Emerging Sciences, Peshawar, Pakistan
| | - Mansoor Qadir
- Department of Computer Science, CECOS University of IT and Emerging Sciences, Peshawar, Pakistan
| | | | - S. S. Askar
- Department of Statistics and Operations Research, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Mohamed Abouhawwash
- Department of Computational Mathematics, Science and Engineering (CMSE), College of Engineering, Michigan State University, East Lansing, MI, United States
- Department of Mathematics, Faculty of Science, Mansoura University, Mansoura, Egypt
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Prinzi F, Currieri T, Gaglio S, Vitabile S. Shallow and deep learning classifiers in medical image analysis. Eur Radiol Exp 2024; 8:26. [PMID: 38438821 PMCID: PMC10912073 DOI: 10.1186/s41747-024-00428-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2023] [Accepted: 01/03/2024] [Indexed: 03/06/2024] Open
Abstract
An increasingly strong connection between artificial intelligence and medicine has enabled the development of predictive models capable of supporting physicians' decision-making. Artificial intelligence encompasses much more than machine learning, which nevertheless is its most cited and used sub-branch in the last decade. Since most clinical problems can be modeled through machine learning classifiers, it is essential to discuss their main elements. This review aims to give primary educational insights on the most accessible and widely employed classifiers in radiology field, distinguishing between "shallow" learning (i.e., traditional machine learning) algorithms, including support vector machines, random forest and XGBoost, and "deep" learning architectures including convolutional neural networks and vision transformers. In addition, the paper outlines the key steps for classifiers training and highlights the differences between the most common algorithms and architectures. Although the choice of an algorithm depends on the task and dataset dealing with, general guidelines for classifier selection are proposed in relation to task analysis, dataset size, explainability requirements, and available computing resources. Considering the enormous interest in these innovative models and architectures, the problem of machine learning algorithms interpretability is finally discussed, providing a future perspective on trustworthy artificial intelligence.Relevance statement The growing synergy between artificial intelligence and medicine fosters predictive models aiding physicians. Machine learning classifiers, from shallow learning to deep learning, are offering crucial insights for the development of clinical decision support systems in healthcare. Explainability is a key feature of models that leads systems toward integration into clinical practice. Key points • Training a shallow classifier requires extracting disease-related features from region of interests (e.g., radiomics).• Deep classifiers implement automatic feature extraction and classification.• The classifier selection is based on data and computational resources availability, task, and explanation needs.
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Affiliation(s)
- Francesco Prinzi
- Department of Biomedicine, Neuroscience and Advanced Diagnostics (BiND), University of Palermo, Palermo, Italy
- Department of Computer Science and Technology, University of Cambridge, Cambridge, CB2 1TN, UK
| | - Tiziana Currieri
- Department of Biomedicine, Neuroscience and Advanced Diagnostics (BiND), University of Palermo, Palermo, Italy
| | - Salvatore Gaglio
- Department of Engineering, University of Palermo, Palermo, Italy
- Institute for High-Performance Computing and Networking, National Research Council (ICAR-CNR), Palermo, Italy
| | - Salvatore Vitabile
- Department of Biomedicine, Neuroscience and Advanced Diagnostics (BiND), University of Palermo, Palermo, Italy.
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Marey A, Saad AM, Killeen BD, Gomez C, Tregubova M, Unberath M, Umair M. Generative Artificial Intelligence: Enhancing Patient Education in Cardiovascular Imaging. BJR Open 2024; 6:tzae018. [PMID: 39086557 PMCID: PMC11290812 DOI: 10.1093/bjro/tzae018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2024] [Revised: 04/18/2024] [Accepted: 07/10/2024] [Indexed: 08/02/2024] Open
Abstract
Cardiovascular disease (CVD) is a major cause of mortality worldwide, especially in resource-limited countries with limited access to healthcare resources. Early detection and accurate imaging are vital for managing CVD, emphasizing the significance of patient education. Generative artificial intelligence (AI), including algorithms to synthesize text, speech, images, and combinations thereof given a specific scenario or prompt, offers promising solutions for enhancing patient education. By combining vision and language models, generative AI enables personalized multimedia content generation through natural language interactions, benefiting patient education in cardiovascular imaging. Simulations, chat-based interactions, and voice-based interfaces can enhance accessibility, especially in resource-limited settings. Despite its potential benefits, implementing generative AI in resource-limited countries faces challenges like data quality, infrastructure limitations, and ethical considerations. Addressing these issues is crucial for successful adoption. Ethical challenges related to data privacy and accuracy must also be overcome to ensure better patient understanding, treatment adherence, and improved healthcare outcomes. Continued research, innovation, and collaboration in generative AI have the potential to revolutionize patient education. This can empower patients to make informed decisions about their cardiovascular health, ultimately improving healthcare outcomes in resource-limited settings.
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Affiliation(s)
- Ahmed Marey
- Alexandria University Faculty of Medicine, Alexandria, 21521, Egypt
| | | | | | - Catalina Gomez
- Department of Computer Science, Laboratory for Computational Sensing and Robotics, Johns Hopkins University, Baltimore, MD, 21218, United States
| | - Mariia Tregubova
- Department of Radiology, Amosov National Institute of Cardiovascular Surgery, Kyiv, 02000, Ukraine
| | - Mathias Unberath
- Department of Computer Science, Laboratory for Computational Sensing and Robotics, Johns Hopkins University, Baltimore, MD, 21218, United States
| | - Muhammad Umair
- Russell H. Morgan Department of Radiology and Radiological Sciences, The Johns Hopkins Hospital, Baltimore, MD, 21205, United States
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12
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Mustapha S, Magaji RA, Magaji MG, Gaya IB, Umar B, Yusha’u Y, Daku AB, Chiroma SM, Jaafar A, Mehat MZ, Taib CNM, Moklas MAM. Neuroprotective roles of flavonoid "hispidulin" in the central nervous system: A review. IRANIAN JOURNAL OF BASIC MEDICAL SCIENCES 2024; 27:1077-1084. [PMID: 39055875 PMCID: PMC11266747 DOI: 10.22038/ijbms.2024.76605.16573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Figures] [Subscribe] [Scholar Register] [Received: 12/03/2023] [Accepted: 03/04/2024] [Indexed: 07/28/2024]
Abstract
Interest in naturally occurring phytochemicals has been on the increase, they are believed to reduce the risk of brain disorders. Hispidulin (HN) is a phenolic flavonoid compound with various pharmacological and biological effects on the central nervous system. It belongs to the flavone class of flavonoids. It can be found in different plant materials, especially fruits and vegetables. The literature used in this review was collected from credible scientific databases including ScienceDirect, Scopus, PubMed, Google Scholar, and Hindawi without time restriction, using relevant keywords, such as HN, brain, central nervous system, flavonoids, and flavones. HN was discovered to possess pro-apoptotic properties, act as an antioxidant, inhibit cytokine production and toll-like receptor 4 expression, as well as impede nuclear factor kappa beta and mitogen-activated protein kinase B. HN was also found to inhibit lipid peroxidation in vitro and reduce brain edema in mice. These pharmacological potentials suggest that HN is a promising candidate for neuroprotection in CNS disorders like depression and epilepsy. This review provides an update on the scientific literature concerning how these activities could help provide various forms of neuroprotection in the CNS. Additional experimental data on the effects of HN in models of neurological disorders and neuroprotection should be explored further. Based on the current study, HN is a promising candidate for neuroprotection of the CNS.
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Affiliation(s)
- Saeed Mustapha
- Department of Human Physiology, Faculty of Basic Medical Sciences, Federal University Dutse, PMB 7156, Jigawa State, Nigeria
- Department of Human Physiology, Faculty of Basic Medical Sciences, Ahmadu Bello University (ABU), 810107, Zaria, Nigeria
| | - Rabiu Abdussalam Magaji
- Department of Human Physiology, Faculty of Basic Medical Sciences, Ahmadu Bello University (ABU), 810107, Zaria, Nigeria
| | - Mohammed Garba Magaji
- Department of Pharmacology and Therapeutics, Faculty of Pharmaceutical Sciences, Ahmadu Bello University (ABU), 810107, Zaria, Nigeria
| | - Ibrahim Bako Gaya
- Department of Human Physiology, Faculty of Basic Medical Sciences, Ahmadu Bello University (ABU), 810107, Zaria, Nigeria
| | - Baraka Umar
- Department of Human Physiology, Faculty of Basic Medical Sciences, Ahmadu Bello University (ABU), 810107, Zaria, Nigeria
| | - Yusuf Yusha’u
- Department of Human Physiology, Faculty of Basic Medical Sciences, Ahmadu Bello University (ABU), 810107, Zaria, Nigeria
| | - Abubakar Bishir Daku
- Department of Human Physiology, Faculty of Basic Medical Sciences, Federal University Dutse, PMB 7156, Jigawa State, Nigeria
- School of Health Sciences, Universiti Sains Malaysia, Kuban Kerian, Kelantan, Malaysia
| | - Samaila Musa Chiroma
- Neucastle University Medicine Malaysia (NuMed), No. 1, Jalan Serjana 1, Kota ilmu, 79200 Iskandar Puteri (formerly Nusajaya) Johor-Malaysia
| | - Aliyu Jaafar
- Department of Human Anatomy, Faculty of Basic Medical Sciences, Ahmadu Bello University (ABU), 810107, Zaria, Nigeria
| | - Mohamad Zulfadli Mehat
- Department of Anatomy, Faculty of Medicine and Health Science, University Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia
| | - Che Norma Mat Taib
- Department of Anatomy, Faculty of Medicine and Health Science, University Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia
| | - Mohamad Aris Moh’d Moklas
- Department of Anatomy, Faculty of Medicine and Health Science, University Putra Malaysia (UPM), Serdang 43400, Selangor, Malaysia
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Panagiotidis E, Papachristou K, Makridou A, Zoglopitou LA, Paschali A, Kalathas T, Chatzimarkou M, Chatzipavlidou V. Review of artificial intelligence clinical applications in Nuclear Medicine. Nucl Med Commun 2024; 45:24-34. [PMID: 37901920 DOI: 10.1097/mnm.0000000000001786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2023]
Abstract
This paper provides an in-depth analysis of the clinical applications of artificial intelligence (AI) in Nuclear Medicine, focusing on three key areas: neurology, cardiology, and oncology. Beginning with neurology, specifically Alzheimer's disease and Parkinson's disease, the paper examines reviews on diagnosis and treatment planning. The same pattern is followed in cardiology studies. In the final section on oncology, the paper explores the various AI applications in multiple cancer types, including lung, head and neck, lymphoma, and pancreatic cancer.
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Affiliation(s)
| | | | - Anna Makridou
- Medical Physics Department, Cancer Hospital of Thessaloniki 'Theagenio', Thessaloniki, Greece
| | | | - Anna Paschali
- Nuclear Medicine Department, Cancer Hospital of Thessaloniki 'Theagenio' and
| | - Theodoros Kalathas
- Nuclear Medicine Department, Cancer Hospital of Thessaloniki 'Theagenio' and
| | - Michael Chatzimarkou
- Medical Physics Department, Cancer Hospital of Thessaloniki 'Theagenio', Thessaloniki, Greece
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14
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Rahimi M, Rahimi P. A Short Review on the Impact of Artificial Intelligence in Diagnosis Diseases: Role of Radiomics In Neuro-Oncology. Galen Med J 2023; 12:1-6. [PMID: 39464540 PMCID: PMC11512432 DOI: 10.31661/gmj.v12i.3158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Revised: 09/16/2023] [Accepted: 10/06/2023] [Indexed: 10/29/2024] Open
Abstract
Artificial Intelligence (AI) is rapidly transforming various aspects of healthcare, including the field of diagnostics and treatment of diseases. This review article aimed to provide an in-depth analysis of the impact of AI, especially, radiomics in the diagnosis of neuro-oncology diseases. Indeed, it is a multidimensional task that requires the integration of clinical assessment, neuroimaging techniques, and emerging technologies like AI and radiomics. The advancements in these fields have the potential to revolutionize the accuracy, efficiency, and personalized approach to diagnosing neuro-oncology diseases, leading to improved patient outcomes and enhanced overall neurologic care. However, AI has some limitations, and ethical challenges should be addressed via future research.
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Affiliation(s)
- Mohammad Rahimi
- Student Research Committee, School of Medicine, Mazandaran University of Medical
Sciences, Mazandaran, Iran
| | - Parsa Rahimi
- Student Research Committee, School of Medicine, Tehran University of Medical
Sciences, Tehran, Iran
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15
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Osuala R, Skorupko G, Lazrak N, Garrucho L, García E, Joshi S, Jouide S, Rutherford M, Prior F, Kushibar K, Díaz O, Lekadir K. medigan: a Python library of pretrained generative models for medical image synthesis. J Med Imaging (Bellingham) 2023; 10:061403. [PMID: 36814939 PMCID: PMC9940031 DOI: 10.1117/1.jmi.10.6.061403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Accepted: 01/23/2023] [Indexed: 02/22/2023] Open
Abstract
Purpose Deep learning has shown great promise as the backbone of clinical decision support systems. Synthetic data generated by generative models can enhance the performance and capabilities of data-hungry deep learning models. However, there is (1) limited availability of (synthetic) datasets and (2) generative models are complex to train, which hinders their adoption in research and clinical applications. To reduce this entry barrier, we explore generative model sharing to allow more researchers to access, generate, and benefit from synthetic data. Approach We propose medigan, a one-stop shop for pretrained generative models implemented as an open-source framework-agnostic Python library. After gathering end-user requirements, design decisions based on usability, technical feasibility, and scalability are formulated. Subsequently, we implement medigan based on modular components for generative model (i) execution, (ii) visualization, (iii) search & ranking, and (iv) contribution. We integrate pretrained models with applications across modalities such as mammography, endoscopy, x-ray, and MRI. Results The scalability and design of the library are demonstrated by its growing number of integrated and readily-usable pretrained generative models, which include 21 models utilizing nine different generative adversarial network architectures trained on 11 different datasets. We further analyze three medigan applications, which include (a) enabling community-wide sharing of restricted data, (b) investigating generative model evaluation metrics, and (c) improving clinical downstream tasks. In (b), we extract Fréchet inception distances (FID) demonstrating FID variability based on image normalization and radiology-specific feature extractors. Conclusion medigan allows researchers and developers to create, increase, and domain-adapt their training data in just a few lines of code. Capable of enriching and accelerating the development of clinical machine learning models, we show medigan's viability as platform for generative model sharing. Our multimodel synthetic data experiments uncover standards for assessing and reporting metrics, such as FID, in image synthesis studies.
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Affiliation(s)
- Richard Osuala
- Universitat de Barcelona, Barcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Barcelona, Spain
| | - Grzegorz Skorupko
- Universitat de Barcelona, Barcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Barcelona, Spain
| | - Noussair Lazrak
- Universitat de Barcelona, Barcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Barcelona, Spain
| | - Lidia Garrucho
- Universitat de Barcelona, Barcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Barcelona, Spain
| | - Eloy García
- Universitat de Barcelona, Facultat de Matemàtiques i Informàtica, Barcelona, Spain
| | - Smriti Joshi
- Universitat de Barcelona, Barcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Barcelona, Spain
| | - Socayna Jouide
- Universitat de Barcelona, Barcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Barcelona, Spain
| | - Michael Rutherford
- University of Arkansas for Medical Sciences, Department of Biomedical Informatics, Little Rock, Arkansas, United States
| | - Fred Prior
- University of Arkansas for Medical Sciences, Department of Biomedical Informatics, Little Rock, Arkansas, United States
| | - Kaisar Kushibar
- Universitat de Barcelona, Barcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Barcelona, Spain
| | - Oliver Díaz
- Universitat de Barcelona, Barcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Barcelona, Spain
| | - Karim Lekadir
- Universitat de Barcelona, Barcelona Artificial Intelligence in Medicine Lab (BCN-AIM), Facultat de Matemàtiques i Informàtica, Barcelona, Spain
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16
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Valizadeh G, Babapour Mofrad F. Parametrized pre-trained network (PPNet): A novel shape classification method using SPHARMs for MI detection. EXPERT SYSTEMS WITH APPLICATIONS 2023; 228:120368. [DOI: 10.1016/j.eswa.2023.120368] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/11/2024]
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17
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Amini M, Pursamimi M, Hajianfar G, Salimi Y, Saberi A, Mehri-Kakavand G, Nazari M, Ghorbani M, Shalbaf A, Shiri I, Zaidi H. Machine learning-based diagnosis and risk classification of coronary artery disease using myocardial perfusion imaging SPECT: A radiomics study. Sci Rep 2023; 13:14920. [PMID: 37691039 PMCID: PMC10493219 DOI: 10.1038/s41598-023-42142-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Accepted: 09/06/2023] [Indexed: 09/12/2023] Open
Abstract
This study aimed to investigate the diagnostic performance of machine learning-based radiomics analysis to diagnose coronary artery disease status and risk from rest/stress Myocardial Perfusion Imaging (MPI) single-photon emission computed tomography (SPECT). A total of 395 patients suspicious of coronary artery disease who underwent 2-day stress-rest protocol MPI SPECT were enrolled in this study. The left ventricle myocardium, excluding the cardiac cavity, was manually delineated on rest and stress images to define a volume of interest. Added to clinical features (age, sex, family history, diabetes status, smoking, and ejection fraction), a total of 118 radiomics features, were extracted from rest and stress MPI SPECT images to establish different feature sets, including Rest-, Stress-, Delta-, and Combined-radiomics (all together) feature sets. The data were randomly divided into 80% and 20% subsets for training and testing, respectively. The performance of classifiers built from combinations of three feature selections, and nine machine learning algorithms was evaluated for two different diagnostic tasks, including 1) normal/abnormal (no CAD vs. CAD) classification, and 2) low-risk/high-risk CAD classification. Different metrics, including the area under the ROC curve (AUC), accuracy (ACC), sensitivity (SEN), and specificity (SPE), were reported for models' evaluation. Overall, models built on the Stress feature set (compared to other feature sets), and models to diagnose the second task (compared to task 1 models) revealed better performance. The Stress-mRMR-KNN (feature set-feature selection-classifier) reached the highest performance for task 1 with AUC, ACC, SEN, and SPE equal to 0.61, 0.63, 0.64, and 0.6, respectively. The Stress-Boruta-GB model achieved the highest performance for task 2 with AUC, ACC, SEN, and SPE of 0.79, 0.76, 0.75, and 0.76, respectively. Diabetes status from the clinical feature family, and dependence count non-uniformity normalized, from the NGLDM family, which is representative of non-uniformity in the region of interest were the most frequently selected features from stress feature set for CAD risk classification. This study revealed promising results for CAD risk classification using machine learning models built on MPI SPECT radiomics. The proposed models are helpful to alleviate the labor-intensive MPI SPECT interpretation process regarding CAD status and can potentially expedite the diagnostic process.
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Affiliation(s)
- Mehdi Amini
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland
| | - Mohamad Pursamimi
- Department of Biomedical Engineering and Medical Physics, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Ghasem Hajianfar
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland
| | - Yazdan Salimi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland
| | - Abdollah Saberi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland
| | - Ghazal Mehri-Kakavand
- Department of Medical Physics, School of Medicine, Semnan University of Medical Sciences, Semnan, Iran
| | - Mostafa Nazari
- Department of Biomedical Engineering and Medical Physics, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Mahdi Ghorbani
- Department of Biomedical Engineering and Medical Physics, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
| | - Ahmad Shalbaf
- Department of Biomedical Engineering and Medical Physics, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Isaac Shiri
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland
- Department of Cardiology, Inselspital, University of Bern, Bern, Switzerland
| | - Habib Zaidi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland.
- University Research and Innovation Center, Obuda University, Budapest, Hungary.
- Department of Nuclear Medicine and Molecular Imaging, University of Groningen, University of Medical Center Groningen, Groningen, The Netherlands.
- Department of Nuclear Medicine, University of Southern Denmark, Odense, Denmark.
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18
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Naderi H, Ramírez J, van Duijvenboden S, Pujadas ER, Aung N, Wang L, Anwar Ahmed Chahal C, Lekadir K, Petersen SE, Munroe PB. Predicting left ventricular hypertrophy from the 12-lead electrocardiogram in the UK Biobank imaging study using machine learning. EUROPEAN HEART JOURNAL. DIGITAL HEALTH 2023; 4:316-324. [PMID: 37538142 PMCID: PMC10393938 DOI: 10.1093/ehjdh/ztad037] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/08/2023] [Revised: 05/05/2023] [Accepted: 05/31/2023] [Indexed: 08/05/2023]
Abstract
Aims Left ventricular hypertrophy (LVH) is an established, independent predictor of cardiovascular disease. Indices derived from the electrocardiogram (ECG) have been used to infer the presence of LVH with limited sensitivity. This study aimed to classify LVH defined by cardiovascular magnetic resonance (CMR) imaging using the 12-lead ECG for cost-effective patient stratification. Methods and results We extracted ECG biomarkers with a known physiological association with LVH from the 12-lead ECG of 37 534 participants in the UK Biobank imaging study. Classification models integrating ECG biomarkers and clinical variables were built using logistic regression, support vector machine (SVM) and random forest (RF). The dataset was split into 80% training and 20% test sets for performance evaluation. Ten-fold cross validation was applied with further validation testing performed by separating data based on UK Biobank imaging centres. QRS amplitude and blood pressure (P < 0.001) were the features most strongly associated with LVH. Classification with logistic regression had an accuracy of 81% [sensitivity 70%, specificity 81%, Area under the receiver operator curve (AUC) 0.86], SVM 81% accuracy (sensitivity 72%, specificity 81%, AUC 0.85) and RF 72% accuracy (sensitivity 74%, specificity 72%, AUC 0.83). ECG biomarkers enhanced model performance of all classifiers, compared to using clinical variables alone. Validation testing by UK Biobank imaging centres demonstrated robustness of our models. Conclusion A combination of ECG biomarkers and clinical variables were able to predict LVH defined by CMR. Our findings provide support for the ECG as an inexpensive screening tool to risk stratify patients with LVH as a prelude to advanced imaging.
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Affiliation(s)
- Hafiz Naderi
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ, UK
- Barts Heart Centre, St Bartholomew’s Hospital, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK
| | - Julia Ramírez
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ, UK
- Aragon Institute of Engineering Research, University of Zaragoza, Zaragoza, Spain
| | - Stefan van Duijvenboden
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ, UK
- Big Data Institute, La Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, UK
| | | | - Nay Aung
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ, UK
- National Institute of Health and Care Research Barts Biomedical Research Centre, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ, UK
- Barts Heart Centre, St Bartholomew’s Hospital, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK
| | - Lin Wang
- School of Electronic Engineering and Computer Science, Queen Mary University of London, London, UK
| | - Choudhary Anwar Ahmed Chahal
- Barts Heart Centre, St Bartholomew’s Hospital, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK
- Cardiac Electrophysiology Section, Division of Cardiovascular Diseases, University of Pennsylvania, Philadelphia, PA, USA
- Department of Cardiovascular Diseases, Mayo Clinic, Rochester, MN, USA
| | - Karim Lekadir
- Faculty of Mathematics and Computer Science, University of Barcelona, Barcelona, Spain
| | - Steffen E Petersen
- Corresponding authors. Tel: +44 (0) 207882 7188. (S.E.P.); Tel: +44 (0) 207882 3586. (P.B.M.)
| | - Patricia B Munroe
- Corresponding authors. Tel: +44 (0) 207882 7188. (S.E.P.); Tel: +44 (0) 207882 3586. (P.B.M.)
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19
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Lallah PN, Laite C, Bangash AB, Chooah O, Jiang C. The Use of Artificial Intelligence for Detecting and Predicting Atrial Arrhythmias Post Catheter Ablation. Rev Cardiovasc Med 2023; 24:215. [PMID: 39076714 PMCID: PMC11266764 DOI: 10.31083/j.rcm2408215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 03/01/2023] [Accepted: 03/07/2023] [Indexed: 07/31/2024] Open
Abstract
Catheter ablation (CA) is considered as one of the most effective methods technique for eradicating persistent and abnormal cardiac arrhythmias. Nevertheless, in some cases, these arrhythmias are not treated properly, resulting in their recurrences. If left untreated, they may result in complications such as strokes, heart failure, or death. Until recently, the primary techniques for diagnosing recurrent arrhythmias following CA were the findings predisposing to the changes caused by the arrhythmias on cardiac imaging and electrocardiograms during follow-up visits, or if patients reported having palpitations or chest discomfort after the ablation. However, these follow-ups may be time-consuming and costly, and they may not always determine the root cause of the recurrences. With the introduction of artificial intelligence (AI), these follow-up visits can be effectively shortened, and improved methods for predicting the likelihood of recurring arrhythmias after their ablation procedures can be developed. AI can be divided into two categories: machine learning (ML) and deep learning (DL), the latter of which is a subset of ML. ML and DL models have been used in several studies to demonstrate their ability to predict and identify cardiac arrhythmias using clinical variables, electrophysiological characteristics, and trends extracted from imaging data. AI has proven to be a valuable aid for cardiologists due to its ability to compute massive amounts of data and detect subtle changes in electric signals and cardiac images, which may potentially increase the risk of recurrent arrhythmias after CA. Despite the fact that these studies involving AI have generated promising outcomes comparable to or superior to human intervention, they have primarily focused on atrial fibrillation while atrial flutter (AFL) and atrial tachycardia (AT) were the subjects of relatively few AI studies. Therefore, the aim of this review is to investigate the interaction of AI algorithms, electrophysiological characteristics, imaging data, risk score calculators, and clinical variables in predicting cardiac arrhythmias following an ablation procedure. This review will also discuss the implementation of these algorithms to enable the detection and prediction of AFL and AT recurrences following CA.
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Affiliation(s)
- Poojesh Nikhil Lallah
- Department of Cardiology, Sir Run Run Shaw Hospital, School of Medicine,
Zhejiang University, 310016 Hangzhou, Zhejiang, China
| | - Chen Laite
- Department of Cardiology, Sir Run Run Shaw Hospital, School of Medicine,
Zhejiang University, 310016 Hangzhou, Zhejiang, China
| | - Abdul Basit Bangash
- Department of Cardiology, Sir Run Run Shaw Hospital, School of Medicine,
Zhejiang University, 310016 Hangzhou, Zhejiang, China
| | - Outesh Chooah
- Department of Radiology, Sir Run Run Shaw Hospital, School of Medicine,
Zhejiang University, 310016 Hangzhou, Zhejiang, China
| | - Chenyang Jiang
- Department of Cardiology, Sir Run Run Shaw Hospital, School of Medicine,
Zhejiang University, 310016 Hangzhou, Zhejiang, China
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20
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Pasupuleti SK, Ramdas B, Burns SS, Palam LR, Kanumuri R, Kumar R, Pandhiri TR, Dave UP, Yellapu NK, Zhou X, Zhang C, Sandusky GE, Yu Z, Honigberg MC, Bick AG, Griffin GK, Niroula A, Ebert BL, Paczesny S, Natarajan P, Kapur R. Obesity-induced inflammation exacerbates clonal hematopoiesis. J Clin Invest 2023; 133:e163968. [PMID: 37071471 PMCID: PMC10231999 DOI: 10.1172/jci163968] [Citation(s) in RCA: 31] [Impact Index Per Article: 31.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Accepted: 04/07/2023] [Indexed: 04/19/2023] Open
Abstract
Characterized by the accumulation of somatic mutations in blood cell lineages, clonal hematopoiesis of indeterminate potential (CHIP) is frequent in aging and involves the expansion of mutated hematopoietic stem and progenitor cells (HSC/Ps) that leads to an increased risk of hematologic malignancy. However, the risk factors that contribute to CHIP-associated clonal hematopoiesis (CH) are poorly understood. Obesity induces a proinflammatory state and fatty bone marrow (FBM), which may influence CHIP-associated pathologies. We analyzed exome sequencing and clinical data for 47,466 individuals with validated CHIP in the UK Biobank. CHIP was present in 5.8% of the study population and was associated with a significant increase in the waist-to-hip ratio (WHR). Mouse models of obesity and CHIP driven by heterozygosity of Tet2, Dnmt3a, Asxl1, and Jak2 resulted in exacerbated expansion of mutant HSC/Ps due in part to excessive inflammation. Our results show that obesity is highly associated with CHIP and that a proinflammatory state could potentiate the progression of CHIP to more significant hematologic neoplasia. The calcium channel blockers nifedipine and SKF-96365, either alone or in combination with metformin, MCC950, or anakinra (IL-1 receptor antagonist), suppressed the growth of mutant CHIP cells and partially restored normal hematopoiesis. Targeting CHIP-mutant cells with these drugs could be a potential therapeutic approach to treat CH and its associated abnormalities in individuals with obesity.
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Affiliation(s)
| | - Baskar Ramdas
- Herman B Wells Center for Pediatric Research, Department of Pediatrics and
| | - Sarah S. Burns
- Herman B Wells Center for Pediatric Research, Department of Pediatrics and
| | | | - Rahul Kanumuri
- Herman B Wells Center for Pediatric Research, Department of Pediatrics and
| | - Ramesh Kumar
- Herman B Wells Center for Pediatric Research, Department of Pediatrics and
| | | | - Utpal P. Dave
- Division of Hematology/Oncology, Department of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA
| | - Nanda Kumar Yellapu
- Department of Biostatistics and Data Science, University of Kansas Medical Center, Kansas City, Kansas, USA
| | - Xinyu Zhou
- Department of Medical and Molecular Genetics and
| | - Chi Zhang
- Department of Medical and Molecular Genetics and
| | - George E. Sandusky
- Department of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA
| | - Zhi Yu
- Cardiovascular Research Center, Massachusetts General Hospital, Boston, Massachusetts, USA
- Program in Medical and Population Genetics and the Cardiovascular Disease Initiative, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA
| | - Michael C. Honigberg
- Cardiovascular Research Center, Massachusetts General Hospital, Boston, Massachusetts, USA
| | - Alexander G. Bick
- Division of Genetic Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, USA
| | - Gabriel K. Griffin
- Department of Pathology, Brigham and Women’s Hospital, Boston, Massachusetts, USA
- Epigenomics Program, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA
| | - Abhishek Niroula
- Program in Medical and Population Genetics and the Cardiovascular Disease Initiative, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA
| | - Benjamin L. Ebert
- Department of Medicine, Brigham and Women’s Hospital, Harvard Medical School, Boston, Massachusetts, USA
| | - Sophie Paczesny
- Department of Microbiology and Immunology, Medical University of South Carolina, Charlestown, South Carolina, USA
| | - Pradeep Natarajan
- Cardiovascular Research Center, Massachusetts General Hospital, Boston, Massachusetts, USA
- Program in Medical and Population Genetics and the Cardiovascular Disease Initiative, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA
- Department of Medicine, Harvard Medical School, Boston, Massachusetts, USA
| | - Reuben Kapur
- Herman B Wells Center for Pediatric Research, Department of Pediatrics and
- Department of Microbiology and Immunology, Indiana University School of Medicine, Indianapolis, Indiana, USA
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21
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Sabouri M, Hajianfar G, Hosseini Z, Amini M, Mohebi M, Ghaedian T, Madadi S, Rastgou F, Oveisi M, Bitarafan Rajabi A, Shiri I, Zaidi H. Myocardial Perfusion SPECT Imaging Radiomic Features and Machine Learning Algorithms for Cardiac Contractile Pattern Recognition. J Digit Imaging 2023; 36:497-509. [PMID: 36376780 PMCID: PMC10039187 DOI: 10.1007/s10278-022-00705-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Revised: 08/31/2022] [Accepted: 09/15/2022] [Indexed: 11/16/2022] Open
Abstract
A U-shaped contraction pattern was shown to be associated with a better Cardiac resynchronization therapy (CRT) response. The main goal of this study is to automatically recognize left ventricular contractile patterns using machine learning algorithms trained on conventional quantitative features (ConQuaFea) and radiomic features extracted from Gated single-photon emission computed tomography myocardial perfusion imaging (GSPECT MPI). Among 98 patients with standard resting GSPECT MPI included in this study, 29 received CRT therapy and 69 did not (also had CRT inclusion criteria but did not receive treatment yet at the time of data collection, or refused treatment). A total of 69 non-CRT patients were employed for training, and the 29 were employed for testing. The models were built utilizing features from three distinct feature sets (ConQuaFea, radiomics, and ConQuaFea + radiomics (combined)), which were chosen using Recursive feature elimination (RFE) feature selection (FS), and then trained using seven different machine learning (ML) classifiers. In addition, CRT outcome prediction was assessed by different treatment inclusion criteria as the study's final phase. The MLP classifier had the highest performance among ConQuaFea models (AUC, SEN, SPE = 0.80, 0.85, 0.76). RF achieved the best performance in terms of AUC, SEN, and SPE with values of 0.65, 0.62, and 0.68, respectively, among radiomic models. GB and RF approaches achieved the best AUC, SEN, and SPE values of 0.78, 0.92, and 0.63 and 0.74, 0.93, and 0.56, respectively, among the combined models. A promising outcome was obtained when using radiomic and ConQuaFea from GSPECT MPI to detect left ventricular contractile patterns by machine learning.
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Affiliation(s)
- Maziar Sabouri
- Department of Medical Physics, School of Medicine, Iran University of Medical Science, Tehran, Iran
- Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Science, Tehran, Iran
| | - Ghasem Hajianfar
- Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Science, Tehran, Iran
| | - Zahra Hosseini
- Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Science, Tehran, Iran
| | - Mehdi Amini
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland
| | - Mobin Mohebi
- Department of Biomedical Engineering, Tarbiat Modares University, Tehran, Iran
| | - Tahereh Ghaedian
- Nuclear Medicine and Molecular Imaging Research Center, School of Medicine, Namazi Teaching Hospital, Shiraz University of Medical Sciences, Shiraz, Iran
| | - Shabnam Madadi
- Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Science, Tehran, Iran
| | - Fereydoon Rastgou
- Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Science, Tehran, Iran
| | - Mehrdad Oveisi
- Comprehensive Cancer Centre, School of Cancer & Pharmaceutical Sciences, Faculty of Life Sciences & Medicine, King's College London, London, UK
- Department of Computer Science, University of British Columbia, Vancouver BC, Canada
| | - Ahmad Bitarafan Rajabi
- Echocardiography Research Center, Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Sciences, Tehran, Iran.
- Cardiovascular Interventional Research Center, Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Sciences, Tehran, Iran.
| | - Isaac Shiri
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland.
| | - Habib Zaidi
- Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland.
- Geneva University Neurocenter, Geneva University, Geneva, Switzerland.
- Department of Nuclear Medicine and Molecular Imaging, University of Groningen, University Medical Center Groningen, Groningen, Netherlands.
- Department of Nuclear Medicine, University of Southern Denmark, Odense, Denmark.
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22
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Zhang X, Cui C, Zhao S, Xie L, Tian Y. Cardiac magnetic resonance radiomics for disease classification. Eur Radiol 2023; 33:2312-2323. [PMID: 36378251 DOI: 10.1007/s00330-022-09236-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2022] [Revised: 10/07/2022] [Accepted: 10/12/2022] [Indexed: 11/17/2022]
Abstract
OBJECTIVES This study investigated the discriminability of quantitative radiomics features extracted from cardiac magnetic resonance (CMR) images for hypertrophic cardiomyopathy (HCM), dilated cardiomyopathy (DCM), and healthy (NOR) patients. METHODS The data of two hundred and eighty-three patients with HCM (n = 48) or DCM (n = 52) and NOR (n = 123) were extracted from two publicly available datasets. Ten feature selection methods were first performed on twenty-one different sets of radiomics features extracted from the left ventricle, right ventricle, and myocardium segmented from CMR images in the end-diastolic frame, end-systolic frame, and a combination of both; then, nine classical machine learning methods were trained with the selected radiomics features to distinguish HCM, DCM, and NOR. Ninety classification models were constructed based on combinations of the ten feature selection methods and nine classifiers. The classification models were evaluated, and the optimal model was selected. The diagnostic performance of the selected model was also compared to that of state-of-the-art methods. RESULTS The random forest minimum redundancy maximum relevance model with features based on LeastAxisLength, Maximum2DDiameterSlice, Median, MinorAxisLength, Sphericity, VoxelVolume, Kurtosis, Flatness, and Skewness was the highest performing model, achieving 91.2% classification accuracy. The cross-validated areas under the curve on the test dataset were 0.938, 0.966, and 0.936 for NOR, DCM, and HCM, respectively. Furthermore, compared with those of the state-of-the-art methods, the sensitivity and accuracy of this model were greatly improved. CONCLUSIONS A predictive model was proposed based on CMR radiomics features for classifying HCM, DCM, and NOR patients. The model had good discriminability. KEY POINTS • The first-order features and the features extracted from the LOG-filtered images have potential in distinguishing HCM patients from DCM patients. • The features extracted from the RV play little role in distinguishing DCM from HCM. • The VoxelVolume of the myocardium in the ED frame is important in the recognition of DCM.
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Affiliation(s)
- Xiaoxuan Zhang
- School of Artificial Intelligence, Beijing Normal University, Beijing, 100875, China
| | - Caixia Cui
- Department of Medical Imaging, The Second Hospital of Hebei Medical University, Shijiazhuang, 050000, China
| | - Shifeng Zhao
- School of Artificial Intelligence, Beijing Normal University, Beijing, 100875, China.
| | - Lizhi Xie
- MR Research China, GE Healthcare, Beijing, 100176, China
| | - Yun Tian
- School of Artificial Intelligence, Beijing Normal University, Beijing, 100875, China.
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23
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Machine Learning Approaches in Diagnosis, Prognosis and Treatment Selection of Cardiac Amyloidosis. Int J Mol Sci 2023; 24:ijms24065680. [PMID: 36982754 PMCID: PMC10051237 DOI: 10.3390/ijms24065680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Revised: 03/12/2023] [Accepted: 03/14/2023] [Indexed: 03/18/2023] Open
Abstract
Cardiac amyloidosis is an uncommon restrictive cardiomyopathy featuring an unregulated amyloid protein deposition that impairs organic function. Early cardiac amyloidosis diagnosis is generally delayed by indistinguishable clinical findings of more frequent hypertrophic diseases. Furthermore, amyloidosis is divided into various groups, according to a generally accepted taxonomy, based on the proteins that make up the amyloid deposits; a careful differentiation between the various forms of amyloidosis is necessary to undertake an adequate therapeutic treatment. Thus, cardiac amyloidosis is thought to be underdiagnosed, which delays necessary therapeutic procedures, diminishing quality of life and impairing clinical prognosis. The diagnostic work-up for cardiac amyloidosis begins with the identification of clinical features, electrocardiographic and imaging findings suggestive or compatible with cardiac amyloidosis, and often requires the histological demonstration of amyloid deposition. One approach to overcome the difficulty of an early diagnosis is the use of automated diagnostic algorithms. Machine learning enables the automatic extraction of salient information from “raw data” without the need for pre-processing methods based on the a priori knowledge of the human operator. This review attempts to assess the various diagnostic approaches and artificial intelligence computational techniques in the detection of cardiac amyloidosis.
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24
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Kwak D, Choi J, Lee S. Rethinking Breast Cancer Diagnosis through Deep Learning Based Image Recognition. SENSORS (BASEL, SWITZERLAND) 2023; 23:2307. [PMID: 36850906 PMCID: PMC9958611 DOI: 10.3390/s23042307] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 02/07/2023] [Accepted: 02/10/2023] [Indexed: 06/18/2023]
Abstract
This paper explored techniques for diagnosing breast cancer using deep learning based medical image recognition. X-ray (Mammography) images, ultrasound images, and histopathology images are used to improve the accuracy of the process by diagnosing breast cancer classification and by inferring their affected location. For this goal, the image recognition application strategies for the maximal diagnosis accuracy in each medical image data are investigated in terms of various image classification (VGGNet19, ResNet50, DenseNet121, EfficietNet v2), image segmentation (UNet, ResUNet++, DeepLab v3), and related loss functions (binary cross entropy, dice Loss, Tversky loss), and data augmentation. As a result of evaluations through the presented methods, when using filter-based data augmentation, ResNet50 showed the best performance in image classification, and UNet showed the best performance in both X-ray image and ultrasound image as image segmentation. When applying the proposed image recognition strategies for the maximal diagnosis accuracy in each medical image data, the accuracy can be improved by 33.3% in image segmentation in X-ray images, 29.9% in image segmentation in ultrasound images, and 22.8% in image classification in histopathology images.
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Affiliation(s)
- Deawon Kwak
- Electronic Engineering Department, Dong Seoul University, Seongnam 13120, Republic of Korea
| | - Jiwoo Choi
- Choi’s Breast Clinic, 197, Gwongwang-ro, Paldal-gu, Suwon-si 16489, Republic of Korea
| | - Sungjin Lee
- Electronic Engineering Department, Dong Seoul University, Seongnam 13120, Republic of Korea
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25
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Sendra-Balcells C, Campello VM, Torrents-Barrena J, Ahmed YA, Elattar M, Ohene-Botwe B, Nyangulu P, Stones W, Ammar M, Benamer LN, Kisembo HN, Sereke SG, Wanyonyi SZ, Temmerman M, Gratacós E, Bonet E, Eixarch E, Mikolaj K, Tolsgaard MG, Lekadir K. Generalisability of fetal ultrasound deep learning models to low-resource imaging settings in five African countries. Sci Rep 2023; 13:2728. [PMID: 36792642 PMCID: PMC9932015 DOI: 10.1038/s41598-023-29490-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Accepted: 02/06/2023] [Indexed: 02/17/2023] Open
Abstract
Most artificial intelligence (AI) research and innovations have concentrated in high-income countries, where imaging data, IT infrastructures and clinical expertise are plentiful. However, slower progress has been made in limited-resource environments where medical imaging is needed. For example, in Sub-Saharan Africa, the rate of perinatal mortality is very high due to limited access to antenatal screening. In these countries, AI models could be implemented to help clinicians acquire fetal ultrasound planes for the diagnosis of fetal abnormalities. So far, deep learning models have been proposed to identify standard fetal planes, but there is no evidence of their ability to generalise in centres with low resources, i.e. with limited access to high-end ultrasound equipment and ultrasound data. This work investigates for the first time different strategies to reduce the domain-shift effect arising from a fetal plane classification model trained on one clinical centre with high-resource settings and transferred to a new centre with low-resource settings. To that end, a classifier trained with 1792 patients from Spain is first evaluated on a new centre in Denmark in optimal conditions with 1008 patients and is later optimised to reach the same performance in five African centres (Egypt, Algeria, Uganda, Ghana and Malawi) with 25 patients each. The results show that a transfer learning approach for domain adaptation can be a solution to integrate small-size African samples with existing large-scale databases in developed countries. In particular, the model can be re-aligned and optimised to boost the performance on African populations by increasing the recall to [Formula: see text] and at the same time maintaining a high precision across centres. This framework shows promise for building new AI models generalisable across clinical centres with limited data acquired in challenging and heterogeneous conditions and calls for further research to develop new solutions for the usability of AI in countries with fewer resources and, consequently, in higher need of clinical support.
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Affiliation(s)
- Carla Sendra-Balcells
- Departament de Matemàtiques i Informàtica, Universitat de Barcelona, Barcelona, Spain.
| | - Víctor M Campello
- Departament de Matemàtiques i Informàtica, Universitat de Barcelona, Barcelona, Spain.
| | | | - Yahya Ali Ahmed
- Obstetrics and Gynecology Department, School of Medicine, Suez University, Suez, Egypt
| | - Mustafa Elattar
- Medical Imaging and Image Processing, Center of Informatics Science, Nile University, Sheikh Zayed City , Egypt
- Research and Development Division, Intixel, Cairo , Egypt
| | - Benard Ohene-Botwe
- Department of Radiography, School of Biomedical and Allied Health Sciences, College of Health Sciences, University of Ghana, Accra , Ghana
- Division of Midwifery and Radiography, School of Health and Psychological Sciences, University of London, London, UK
| | | | | | - Mohammed Ammar
- Department of Electrical Engineering Systems, Laboratory of Engineering System and Telecommunication, University of M'Hamed Bougara Boumerdes, Algiers, Algeria
| | - Lamya Nawal Benamer
- Obstetrics and Gynecology Department, School of Medicine, Algiers University, Algiers, Algeria
| | | | - Senai Goitom Sereke
- Department of Radiology and Radiotherapy, School of Medicine, Makerere University College of Health Sciences, Kampala, Uganda
| | - Sikolia Z Wanyonyi
- Department of Obstetrics and Gynaecology, Aga Khan University Hospital, 3rd Parklands Avenue, Nairobi, Kenya
| | - Marleen Temmerman
- Centre of Excellence in Women and Child Health, Aga Khan University, Nairobi, Kenya
| | - Eduard Gratacós
- BCNatal Fetal Medicine Research Center, Hospital Clínic and Hospital Sant Joan de Déu, Universitat de Barcelona, Barcelona, Spain
- Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain
- Centre for Biomedical Research on Rare Diseases (CIBER-ER), Barcelona, Spain
| | - Elisenda Bonet
- BCNatal Fetal Medicine Research Center, Hospital Clínic and Hospital Sant Joan de Déu, Universitat de Barcelona, Barcelona, Spain
- Barcelona Tech, Universitat Politècnica de Catalunya, Barcelona, Spain
| | - Elisenda Eixarch
- BCNatal Fetal Medicine Research Center, Hospital Clínic and Hospital Sant Joan de Déu, Universitat de Barcelona, Barcelona, Spain
- Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain
- Centre for Biomedical Research on Rare Diseases (CIBER-ER), Barcelona, Spain
| | - Kamil Mikolaj
- Copenhagen Academy for Medical Education and Simulation and Department of Obstetrics, Rigshospitalet, Copenhagen, Denmark
| | - Martin Grønnebæk Tolsgaard
- Copenhagen Academy for Medical Education and Simulation and Department of Obstetrics, Rigshospitalet, Copenhagen, Denmark
| | - Karim Lekadir
- Departament de Matemàtiques i Informàtica, Universitat de Barcelona, Barcelona, Spain
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26
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Auto-MyIn: Automatic diagnosis of myocardial infarction via multiple GLCMs, CNNs, and SVMs. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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27
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Zhao D, Ferdian E, Maso Talou GD, Quill GM, Gilbert K, Wang VY, Babarenda Gamage TP, Pedrosa J, D’hooge J, Sutton TM, Lowe BS, Legget ME, Ruygrok PN, Doughty RN, Camara O, Young AA, Nash MP. MITEA: A dataset for machine learning segmentation of the left ventricle in 3D echocardiography using subject-specific labels from cardiac magnetic resonance imaging. Front Cardiovasc Med 2023; 9:1016703. [PMID: 36704465 PMCID: PMC9871929 DOI: 10.3389/fcvm.2022.1016703] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 12/06/2022] [Indexed: 01/11/2023] Open
Abstract
Segmentation of the left ventricle (LV) in echocardiography is an important task for the quantification of volume and mass in heart disease. Continuing advances in echocardiography have extended imaging capabilities into the 3D domain, subsequently overcoming the geometric assumptions associated with conventional 2D acquisitions. Nevertheless, the analysis of 3D echocardiography (3DE) poses several challenges associated with limited spatial resolution, poor contrast-to-noise ratio, complex noise characteristics, and image anisotropy. To develop automated methods for 3DE analysis, a sufficiently large, labeled dataset is typically required. However, ground truth segmentations have historically been difficult to obtain due to the high inter-observer variability associated with manual analysis. We address this lack of expert consensus by registering labels derived from higher-resolution subject-specific cardiac magnetic resonance (CMR) images, producing 536 annotated 3DE images from 143 human subjects (10 of which were excluded). This heterogeneous population consists of healthy controls and patients with cardiac disease, across a range of demographics. To demonstrate the utility of such a dataset, a state-of-the-art, self-configuring deep learning network for semantic segmentation was employed for automated 3DE analysis. Using the proposed dataset for training, the network produced measurement biases of -9 ± 16 ml, -1 ± 10 ml, -2 ± 5 %, and 5 ± 23 g, for end-diastolic volume, end-systolic volume, ejection fraction, and mass, respectively, outperforming an expert human observer in terms of accuracy as well as scan-rescan reproducibility. As part of the Cardiac Atlas Project, we present here a large, publicly available 3DE dataset with ground truth labels that leverage the higher resolution and contrast of CMR, to provide a new benchmark for automated 3DE analysis. Such an approach not only reduces the effect of observer-specific bias present in manual 3DE annotations, but also enables the development of analysis techniques which exhibit better agreement with CMR compared to conventional methods. This represents an important step for enabling more efficient and accurate diagnostic and prognostic information to be obtained from echocardiography.
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Affiliation(s)
- Debbie Zhao
- Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
| | - Edward Ferdian
- Department of Anatomy and Medical Imaging, University of Auckland, Auckland, New Zealand
| | | | - Gina M. Quill
- Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
| | - Kathleen Gilbert
- Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
| | - Vicky Y. Wang
- Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
| | | | - João Pedrosa
- Institute for Systems and Computer Engineering, Technology and Science (INESC TEC), Porto, Portugal
| | - Jan D’hooge
- Department of Cardiovascular Sciences, KU Leuven, Leuven, Belgium
| | - Timothy M. Sutton
- Counties Manukau Health Cardiology, Middlemore Hospital, Auckland, New Zealand
| | - Boris S. Lowe
- Green Lane Cardiovascular Service, Auckland City Hospital, Auckland, New Zealand
| | - Malcolm E. Legget
- Department of Medicine, University of Auckland, Auckland, New Zealand
| | - Peter N. Ruygrok
- Green Lane Cardiovascular Service, Auckland City Hospital, Auckland, New Zealand
- Department of Medicine, University of Auckland, Auckland, New Zealand
| | - Robert N. Doughty
- Green Lane Cardiovascular Service, Auckland City Hospital, Auckland, New Zealand
- Department of Medicine, University of Auckland, Auckland, New Zealand
| | - Oscar Camara
- Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona, Spain
| | - Alistair A. Young
- Department of Anatomy and Medical Imaging, University of Auckland, Auckland, New Zealand
- Department of Biomedical Engineering, King’s College London, London, United Kingdom
| | - Martyn P. Nash
- Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
- Department of Engineering Science, University of Auckland, Auckland, New Zealand
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28
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Machrina Y, Anggraini DR, Pane YS, Harahap NS, Pant G. Physical Activity Maintain Immune Response Through TLR-2/TLR-4 Gene Expression in Type-2 Diabetes Mellitus Patient at Medan City. Med Arch 2023; 77:276-280. [PMID: 37876569 PMCID: PMC10591241 DOI: 10.5455/medarh.2023.77.276-280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Accepted: 08/04/2023] [Indexed: 10/26/2023] Open
Abstract
Background The Increasing in type-2 diabetes mellitus (T2DM) needs to solve comprehensively and holistically. Patients with T2DM should have self-coping due to lifestyle modification. Abdominal fat accumulation can release pro-inflammatory cytokine that leads TLR-2 and TLR-4 to the response. These two kinds of toll-like receptors exist on the monocyte surface membrane which is an innate immunity cell. Objective The aims of this study were to get the profile of physical activity, metabolic state, and mononuclear cell response to the expression of the TLR2 and TLR4 genes in T2DM patients. Methods It was a descriptive-analytic study with a cross-sectional study design. Thirty-two eligible patients with inclusion criteria participated as subjects. All subjects answered questions by IPAQ, and checked metabolic state with body composition analysis. The TLR2 and TLR4 gene expression was determined with quantitative Real- Time PCR. Results This study result found that most T2DM patients were in a highly active category in which most of their activity was walking (light intensity). The average abdominal circumferences were 91.81 ± 15.4 cm, body fat percentage was 29.5 ± 8.8%, and fasting blood sugar was 187.07 ± 67.03 mg/dl. Mononuclear cells number were normal. The expression of the TLR2 gene was lower by 0.71 fold and TLR4 gene expression was lower by 0.9 fold compared with non-DM (p<0.05). By chi-square test, there was a positive correlation between TLR2 gene expression with fasting blood glucose (p=0.011, and a positive correlation between the abdominal circumference and TLR4 gene expression (p=0.011). Conclusion Type-2 Diabetes mellitus patients in primary health care keep walking as their physical activity to maintain blood glucose. Patients need to do moderate to vigorous exercise regularly to reduce body fat percentage especially abdominal fat to reduce Toll-like receptor gene expression, so insulin resistance and blood glucose level might decline to normal.
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Affiliation(s)
- Yetty Machrina
- Department of Physiology, Faculty of Medicine, Universitas Sumatera Utara, Medan, Inodnesia
| | - Dwi Rita Anggraini
- Department of Anatomy, Faculty of Medicine, Universitas Sumatera Utara, Medan, Indonesia
| | - Yunita Sari Pane
- Department of Pharmacology and Therapeutics, Faculty of Medicine, Universitas Sumatera Utara, Medan, Indonesia
| | - Novita Sari Harahap
- Faculty of Sport Science, Universitas Negeri Medan, Sumatera Utara, Medan, Indonesia
| | - Gaurav Pant
- Sportal Coorporate pvt ltd, Lucknow, Uttar Pardesh, India
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29
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Nittas V, Daniore P, Landers C, Gille F, Amann J, Hubbs S, Puhan MA, Vayena E, Blasimme A. Beyond high hopes: A scoping review of the 2019-2021 scientific discourse on machine learning in medical imaging. PLOS DIGITAL HEALTH 2023; 2:e0000189. [PMID: 36812620 PMCID: PMC9931290 DOI: 10.1371/journal.pdig.0000189] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Accepted: 01/02/2023] [Indexed: 02/04/2023]
Abstract
Machine learning has become a key driver of the digital health revolution. That comes with a fair share of high hopes and hype. We conducted a scoping review on machine learning in medical imaging, providing a comprehensive outlook of the field's potential, limitations, and future directions. Most reported strengths and promises included: improved (a) analytic power, (b) efficiency (c) decision making, and (d) equity. Most reported challenges included: (a) structural barriers and imaging heterogeneity, (b) scarcity of well-annotated, representative and interconnected imaging datasets (c) validity and performance limitations, including bias and equity issues, and (d) the still missing clinical integration. The boundaries between strengths and challenges, with cross-cutting ethical and regulatory implications, remain blurred. The literature emphasizes explainability and trustworthiness, with a largely missing discussion about the specific technical and regulatory challenges surrounding these concepts. Future trends are expected to shift towards multi-source models, combining imaging with an array of other data, in a more open access, and explainable manner.
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Affiliation(s)
- Vasileios Nittas
- Health Ethics and Policy Lab, Department of Health Sciences and Technology, Swiss Federal Institute of Technology (ETH Zurich), Zurich, Switzerland
- Epidemiology, Biostatistics and Prevention Institute, Faculty of Medicine, Faculty of Science, University of Zurich, Zurich, Switzerland
| | - Paola Daniore
- Institute for Implementation Science in Health Care, Faculty of Medicine, University of Zurich, Switzerland
- Digital Society Initiative, University of Zurich, Switzerland
| | - Constantin Landers
- Health Ethics and Policy Lab, Department of Health Sciences and Technology, Swiss Federal Institute of Technology (ETH Zurich), Zurich, Switzerland
| | - Felix Gille
- Institute for Implementation Science in Health Care, Faculty of Medicine, University of Zurich, Switzerland
- Digital Society Initiative, University of Zurich, Switzerland
| | - Julia Amann
- Health Ethics and Policy Lab, Department of Health Sciences and Technology, Swiss Federal Institute of Technology (ETH Zurich), Zurich, Switzerland
| | - Shannon Hubbs
- Health Ethics and Policy Lab, Department of Health Sciences and Technology, Swiss Federal Institute of Technology (ETH Zurich), Zurich, Switzerland
| | - Milo Alan Puhan
- Epidemiology, Biostatistics and Prevention Institute, Faculty of Medicine, Faculty of Science, University of Zurich, Zurich, Switzerland
| | - Effy Vayena
- Health Ethics and Policy Lab, Department of Health Sciences and Technology, Swiss Federal Institute of Technology (ETH Zurich), Zurich, Switzerland
| | - Alessandro Blasimme
- Health Ethics and Policy Lab, Department of Health Sciences and Technology, Swiss Federal Institute of Technology (ETH Zurich), Zurich, Switzerland
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30
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Sahli H, Ben Slama A, Zeraii A, Labidi S, Sayadi M. ResNet-SVM: Fusion based glioblastoma tumor segmentation and classification. JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY 2023; 31:27-48. [PMID: 36278391 DOI: 10.3233/xst-221240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Computerized segmentation of brain tumor based on magnetic resonance imaging (MRI) data presents an important challenging act in computer vision. In image segmentation, numerous studies have explored the feasibility and advantages of employing deep neural network methods to automatically detect and segment brain tumors depicting on MRI. For training the deeper neural network, the procedure usually requires extensive computational power and it is also very time-consuming due to the complexity and the gradient diffusion difficulty. In order to address and help solve this challenge, we in this study present an automatic approach for Glioblastoma brain tumor segmentation based on deep Residual Learning Network (ResNet) to get over the gradient problem of deep Convolutional Neural Networks (CNNs). Using the extra layers added to a deep neural network, ResNet algorithm can effectively improve the accuracy and the performance, which is useful in solving complex problems with a much rapid training process. An additional method is then proposed to fully automatically classify different brain tumor categories (necrosis, edema, and enhancing regions). Results confirm that the proposed fusion method (ResNet-SVM) has an increased classification results of accuracy (AC = 89.36%), specificity (SP = 92.52%) and precision (PR = 90.12%) using 260 MRI data for the training and 112 data used for testing and validation of Glioblastoma tumor cases. Compared to the state-of-the art methods, the proposed scheme provides a higher performance by identifying Glioblastoma tumor type.
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Affiliation(s)
- Hanene Sahli
- Laboratory of Signal Image and Energy Mastery, National Higher Engineering School of Tunis, University of Tunis, Tunis, Tunisia
| | - Amine Ben Slama
- Laboratory of Biophysics and Medical Technologies, Higher Institute of Medical Technologies of Tunis, University of Tunis El Manar, Tunis, Tunisia
| | - Abderrazek Zeraii
- Laboratory of Biophysics and Medical Technologies, Higher Institute of Medical Technologies of Tunis, University of Tunis El Manar, Tunis, Tunisia
| | - Salam Labidi
- Laboratory of Biophysics and Medical Technologies, Higher Institute of Medical Technologies of Tunis, University of Tunis El Manar, Tunis, Tunisia
| | - Mounir Sayadi
- Laboratory of Signal Image and Energy Mastery, National Higher Engineering School of Tunis, University of Tunis, Tunis, Tunisia
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Ghazisaeedi M, Shahmoradi L, Garavand A, Maleki M, Abhari S, Ladan M, Mehdizadeh S. Developing a Clinical Decision Support System for Prediction Postoperative Coronary Artery Bypass Grafting Infection in Diabetic Patients. J Biomed Phys Eng 2022; 12:583-590. [PMID: 36569563 PMCID: PMC9759640 DOI: 10.31661/jbpe.v0i0.2011-1235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Accepted: 12/20/2020] [Indexed: 06/17/2023]
Abstract
BACKGROUND Postoperative infection in Coronary Artery Bypass Graft (CABG) is one of the most common complications for diabetic patients, due to an increase in the hospitalization and cost. To address these issues, it is necessary to apply some solutions. OBJECTIVE The study aimed to the development of a Clinical Decision Support System (CDSS) for predicting the CABG postoperative infection in diabetic patients. MATERIAL AND METHODS This developmental study is conducted on a private hospital in Tehran in 2016. From 1061 CABG surgery medical records, we selected 210 cases randomly. After data gathering, we used statistical tests for selecting related features. Then an Artificial Neural Network (ANN), which was a one-layer perceptron network model and a supervised training algorithm with gradient descent, was constructed using MATLAB software. The software was then developed and tested using the receiver operating characteristic (ROC) diagram and the confusion matrix. RESULTS Based on the correlation analysis, from 28 variables in the data, 20 variables had a significant relationship with infection after CABG (P<0.05). The results of the confusion matrix showed that the sensitivity of the system was 69%, and the specificity and the accuracy were 97% and 84%, respectively. The Receiver Operating Characteristic (ROC) diagram shows the appropriate performance of the CDSS. CONCLUSION The use of CDSS can play an important role in predicting infection after CABG in patients with diabetes. The designed software can be used as a supporting tool for physicians to predict infections caused by CABG in diabetic patients as a susceptible group. However, other factors affecting infection must also be considered for accurate prediction.
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Affiliation(s)
- Marjan Ghazisaeedi
- PhD, Department of Health Information Management, School of Allied Medical Sciences, Tehran University of Medical Sciences, Tehran, Iran
| | - Leila Shahmoradi
- PhD, Department of Health Information Management, School of Allied Medical Sciences, Tehran University of Medical Sciences, Tehran, Iran
| | - Ali Garavand
- PhD, Department of Health Information Technology, School of Allied Medical Sciences, Lorestan University of Medical Sciences, Khorramabad, Iran
| | - Masoumeh Maleki
- MSc, Department of Health Information Management, School of Allied Medical Sciences, Tehran University of Medical Sciences, Tehran, Iran
| | - Shahabeddin Abhari
- PhD, Amol Faculty of Paramedical Sciences, Mazandaran University of Medical Sciences, Sari, Iran
| | - Marjan Ladan
- MD, Department of Cardiology, Pars Hospital, Tehran, Iran
| | - Sina Mehdizadeh
- MSc, Department of Robotic Engineering, Shahrood University of Technology, Shahrood, Iran
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Kerr B, Brandon L. Atrial Fibrillation, thromboembolic risk, and the potential role of the natriuretic peptides, a focus on BNP and NT-proBNP - A narrative review. IJC HEART & VASCULATURE 2022; 43:101132. [PMID: 36246770 PMCID: PMC9562601 DOI: 10.1016/j.ijcha.2022.101132] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 09/30/2022] [Accepted: 10/05/2022] [Indexed: 10/25/2022]
Abstract
Atrial fibrillation (AF) is one of the most commonly encountered arrythmia in clinical practice. AF itself can be driven by genetic predisposition, ectopic electrical activity, and abnormal atrial tissue substrates. Often there is no single etiological mechanism, but rather a combination of factors that feed back to remodel and worsen tissue substrate, "AF begets AF". The clinical consequences of AF can often include emboli, heart failure, and early mortality. The classical AF cardioembolic (CE) concept requires thrombus formation in the left atrial appendage, with subsequent embolization. The temporal dissociation between AF occurrence and CE events has thrown doubt on AF as the driver of this mechanism. Instead, there has been a resurgence of the "atrial cardiomyopathy" (ACM) concept. An ACM is proposed as a potential mechanism of embolic disease through promotion of prothrombotic mechanisms, with AF instead reflecting atrial disease severity. Regardless, AF has been implicated in 25% to 30% of cryptogenic strokes. Natriuretic peptide(NP)s have been shown to be elevated in AF, with higher levels of both NT-proBNP and BNP being predictive of incidental AF. NPs potentially reflect the atrial environment and could be used to identify an underlying ACM. Therefore, this narrative review examines this evidence and mechanisms that may underpin the role of NPs in identifying atrial dysfunction, with focus on both, BNP and NTproBNP. We explore their potential role in the prediction and screening for both, ACM and AF. Moreover, we compare both NPs directly to ascertain a superior biomarker.
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Key Words
- ACM, Atrial cardiomyopathy
- AF, Atrial fibrillation
- ARISTOTLE trial, Apixaban For Reduction In Stroke And Other Thromboembolic Events In Atrial Fibrillation Trial
- ASSERT trial, Atrial Fibrillation Evaluation In Pacemaker Patient’s Trial
- ASSERT-II trial, Asymptomatic Atrial Fibrillation and Stroke Evaluation in Pacemaker Patients and the Atrial Fibrillation Reduction Atrial Pacing Trial
- AUC, Area Under The Curve
- Atrial cardiomyopathy
- Atrial fibrillation
- BNP
- BNP, Brain natriuretic peptide
- CE, Cardioembolic
- CHA2DS2-Vasc, Congestive Heart Failure, Hypertension, Age ≥ 75, Diabetes, Stroke/TIA/Thromboembolism, Vascular Disease, Age 65–74
- CHARGE, Cohorts For Heart And Aging Research In Genomic Epidemiology
- CI, Confidence Intervals
- CNP, C-type natriuretic peptide
- EHRAS, EHRA/ HRS/APHRS/SOLAECE
- ESUS, Embolic Stroke of Unknown Source
- IMPACT Trial, Implementation of An RCT To Improve Treatment With Oral Anticoagulants In Patients With Atrial Fibrillation
- MR-proANP, Mid Regional Pro-Atrial Natriuretic Peptide
- NP, Natriuretic peptide
- NT-proBNP
- NT-proBNP, N-Terminal Pro Brain Natriuretic Peptide
- Natriuretic peptides
- RE-LY study, The Randomized Evaluation of Long-Term Anticoagulation Therapy study
- SE, Standard Error
- TE, Thromboembolic event
- TIA, Transient ischemic attack
- TRENDS trial, A Prospective Study of the Clinical Significance of Atrial Arrhythmias Detected by Implanted Device Diagnostics
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Affiliation(s)
- Brian Kerr
- Department of Cardiology, St James Hospital, James Street, Dublin 8, Ireland
| | - Lisa Brandon
- Department of Cardiology, St James Hospital, James Street, Dublin 8, Ireland
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A Systematic Review of Applications of Machine Learning and Other Soft Computing Techniques for the Diagnosis of Tropical Diseases. Trop Med Infect Dis 2022; 7:tropicalmed7120398. [PMID: 36548653 PMCID: PMC9787706 DOI: 10.3390/tropicalmed7120398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Revised: 11/17/2022] [Accepted: 11/21/2022] [Indexed: 11/29/2022] Open
Abstract
This systematic literature aims to identify soft computing techniques currently utilized in diagnosing tropical febrile diseases and explore the data characteristics and features used for diagnoses, algorithm accuracy, and the limitations of current studies. The goal of this study is therefore centralized around determining the extent to which soft computing techniques have positively impacted the quality of physician care and their effectiveness in tropical disease diagnosis. The study has used PRISMA guidelines to identify paper selection and inclusion/exclusion criteria. It was determined that the highest frequency of articles utilized ensemble techniques for classification, prediction, analysis, diagnosis, etc., over single machine learning techniques, followed by neural networks. The results identified dengue fever as the most studied disease, followed by malaria and tuberculosis. It was also revealed that accuracy was the most common metric utilized to evaluate the predictive capability of a classification mode. The information presented within these studies benefits frontline healthcare workers who could depend on soft computing techniques for accurate diagnoses of tropical diseases. Although our research shows an increasing interest in using machine learning techniques for diagnosing tropical diseases, there still needs to be more studies. Hence, recommendations and directions for future research are proposed.
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Szabo L, Raisi-Estabragh Z, Salih A, McCracken C, Ruiz Pujadas E, Gkontra P, Kiss M, Maurovich-Horvath P, Vago H, Merkely B, Lee AM, Lekadir K, Petersen SE. Clinician's guide to trustworthy and responsible artificial intelligence in cardiovascular imaging. Front Cardiovasc Med 2022; 9:1016032. [PMID: 36426221 PMCID: PMC9681217 DOI: 10.3389/fcvm.2022.1016032] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Accepted: 10/11/2022] [Indexed: 12/01/2023] Open
Abstract
A growing number of artificial intelligence (AI)-based systems are being proposed and developed in cardiology, driven by the increasing need to deal with the vast amount of clinical and imaging data with the ultimate aim of advancing patient care, diagnosis and prognostication. However, there is a critical gap between the development and clinical deployment of AI tools. A key consideration for implementing AI tools into real-life clinical practice is their "trustworthiness" by end-users. Namely, we must ensure that AI systems can be trusted and adopted by all parties involved, including clinicians and patients. Here we provide a summary of the concepts involved in developing a "trustworthy AI system." We describe the main risks of AI applications and potential mitigation techniques for the wider application of these promising techniques in the context of cardiovascular imaging. Finally, we show why trustworthy AI concepts are important governing forces of AI development.
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Affiliation(s)
- Liliana Szabo
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, London, United Kingdom
- Barts Heart Centre, St Bartholomew's Hospital, Barts Health NHS Trust, London, United Kingdom
- Semmelweis University Heart and Vascular Center, Budapest, Hungary
| | - Zahra Raisi-Estabragh
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, London, United Kingdom
- Barts Heart Centre, St Bartholomew's Hospital, Barts Health NHS Trust, London, United Kingdom
| | - Ahmed Salih
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, London, United Kingdom
- Barts Heart Centre, St Bartholomew's Hospital, Barts Health NHS Trust, London, United Kingdom
| | - Celeste McCracken
- Division of Cardiovascular Medicine, Radcliffe Department of Medicine, National Institute for Health Research Oxford Biomedical Research Centre, Oxford University Hospitals NHS Foundation Trust, University of Oxford, Oxford, United Kingdom
| | - Esmeralda Ruiz Pujadas
- Departament de Matemàtiques i Informàtica, Artificial Intelligence in Medicine Lab (BCN-AIM), Universitat de Barcelona, Barcelona, Spain
| | - Polyxeni Gkontra
- Departament de Matemàtiques i Informàtica, Artificial Intelligence in Medicine Lab (BCN-AIM), Universitat de Barcelona, Barcelona, Spain
| | - Mate Kiss
- Siemens Healthcare Hungary, Budapest, Hungary
| | - Pal Maurovich-Horvath
- Department of Radiology, Medical Imaging Centre, Semmelweis University, Budapest, Hungary
| | - Hajnalka Vago
- Semmelweis University Heart and Vascular Center, Budapest, Hungary
| | - Bela Merkely
- Semmelweis University Heart and Vascular Center, Budapest, Hungary
| | - Aaron M. Lee
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, London, United Kingdom
- Barts Heart Centre, St Bartholomew's Hospital, Barts Health NHS Trust, London, United Kingdom
| | - Karim Lekadir
- Departament de Matemàtiques i Informàtica, Artificial Intelligence in Medicine Lab (BCN-AIM), Universitat de Barcelona, Barcelona, Spain
| | - Steffen E. Petersen
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, London, United Kingdom
- Barts Heart Centre, St Bartholomew's Hospital, Barts Health NHS Trust, London, United Kingdom
- Health Data Research UK, London, United Kingdom
- Alan Turing Institute, London, United Kingdom
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O'Brien H, Whitaker J, O'Neill MD, Grigoryan K, Gill H, Mehta V, Elliot MK, Rinaldi CA, Morgan H, Perera D, Taylor J, Rajani R, Rhode K, Niederer S. Regional left ventricle scar detection from routine cardiac computed tomography angiograms using latent space classification. Comput Biol Med 2022; 150:106191. [PMID: 37859285 PMCID: PMC7616243 DOI: 10.1016/j.compbiomed.2022.106191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Revised: 10/01/2022] [Accepted: 10/08/2022] [Indexed: 11/29/2022]
Abstract
OBJECTIVES The aim of this study is to develop an automated method of regional scar detection on clinically standard computed tomography angiography (CTA) using encoder-decoder networks with latent space classification. BACKGROUND Localising scar in cardiac patients can assist in diagnosis and guide interventions. Magnetic resonance imaging (MRI) with late gadolinium enhancement (LGE) is the clinical gold standard for scar imaging; however, it is commonly contraindicated. CTA is an alternative imaging modality that has fewer contraindications and is widely used as a first-line imaging modality of cardiac applications. METHODS A dataset of 79 patients with both clinically indicated MRI LGE and subsequent CTA scans was used to train and validate networks to classify septal and lateral scar presence within short axis left ventricle slices. Two designs of encoder-decoder networks were compared, with one encoding anatomical shape in the latent space. Ground truth was established by segmenting scar in MRI LGE and registering this to the CTA images. Short axis slices were taken from the CTA, which served as the input to the networks. An independent external set of 22 cases (27% the size of the cross-validation set) was used to test the best network. RESULTS A network classifying lateral scar only achieved an area under ROC curve of 0.75, with a sensitivity of 0.79 and specificity of 0.62 on the independent test set. The results of septal scar classification were poor (AUC < 0.6) for all networks. This was likely due to a high class imbalance. The highest AUC network encoded anatomical shape information in the network latent space, indicating it was important for the successful classification of lateral scar. CONCLUSIONS Automatic lateral wall scar detection can be performed from a routine cardiac CTA with reasonable accuracy, without any scar specific imaging. This requires only a single acquisition in the cardiac cycle. In a clinical setting, this could be useful for pre-procedure planning, especially where MRI is contraindicated. Further work with more septal scar present is warranted to improve the usefulness of this approach.
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Affiliation(s)
- Hugh O'Brien
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom.
| | - John Whitaker
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom; Cardiology Department, Guy's and St Thomas' NHS Foundation Trust, London, United Kingdom
| | - Mark D O'Neill
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom; Cardiology Department, Guy's and St Thomas' NHS Foundation Trust, London, United Kingdom
| | - Karine Grigoryan
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom; Cardiology Department, Guy's and St Thomas' NHS Foundation Trust, London, United Kingdom
| | - Harminder Gill
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom; Cardiology Department, Guy's and St Thomas' NHS Foundation Trust, London, United Kingdom
| | - Vishal Mehta
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom; Cardiology Department, Guy's and St Thomas' NHS Foundation Trust, London, United Kingdom
| | - Mark K Elliot
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom; Cardiology Department, Guy's and St Thomas' NHS Foundation Trust, London, United Kingdom
| | - Christopher Aldo Rinaldi
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom; Cardiology Department, Guy's and St Thomas' NHS Foundation Trust, London, United Kingdom
| | - Holly Morgan
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom; Cardiology Department, Guy's and St Thomas' NHS Foundation Trust, London, United Kingdom
| | - Divaka Perera
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom; Cardiology Department, Guy's and St Thomas' NHS Foundation Trust, London, United Kingdom
| | - Jonathan Taylor
- 3DLab, Sheffield Teaching Hospitals NHS Foundation Trust, Sheffield, United Kingdom
| | - Ronak Rajani
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom; Cardiology Department, Guy's and St Thomas' NHS Foundation Trust, London, United Kingdom
| | - Kawal Rhode
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom
| | - Steven Niederer
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom
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Wang Y, Lin L, Li X, Cao J, Wang J, Jing ZC, Li S, Liu H, Wang X, Jin ZY, Wang YN. Native T1 Mapping-Based Radiomics for Noninvasive Prediction of the Therapeutic Effect of Pulmonary Arterial Hypertension. Diagnostics (Basel) 2022; 12:diagnostics12102492. [PMID: 36292180 PMCID: PMC9600513 DOI: 10.3390/diagnostics12102492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Revised: 10/11/2022] [Accepted: 10/12/2022] [Indexed: 11/16/2022] Open
Abstract
(1) Background: Novel markers for predicting the short-term therapeutic effect of pulmonary arterial hypertension (PAH) to assist in the prompt initiation of tailored treatment strategies are greatly needed and highly desirable. The aim of the study was to investigate the role of cardiac magnetic resonance (CMR) native T1 mapping radiomics in predicting the short-term therapeutic effect in PAH patients; (2) Methods: Fifty-five PAH patients who received targeted therapy were retrospectively included. Patients were subdivided into an effective group and an ineffective group by assessing the therapeutic effect after ≥3 months of treatment. All patients underwent CMR examinations prior to the beginning of the therapy. Radiomics features from native T1 mapping images were extracted. A radiomics model was constructed using the support vector machine (SVM) algorithm for predicting the therapeutic effect; (3) Results: The SVM radiomics model revealed favorable performance for predicting the therapeutic effect with areas under the receiver operating characteristic curve of 0.955 in the training cohort and 0.893 in the test cohort, respectively. With the optimal cutoff value, the radiomics model showed accuracies of 0.909 and 0.818 in the training and test cohorts, respectively; (4) Conclusions: The CMR native T1 mapping-based radiomics model holds promise for predicting the therapeutic effect in PAH patients.
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Affiliation(s)
- Yue Wang
- Department of Radiology, State Key Laboratory of Complex Severe and Rare Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Peking Union Medical College Hospital, No. 1, Shuaifuyuan, Dongcheng District, Beijing 100730, China
| | - Lu Lin
- Department of Radiology, State Key Laboratory of Complex Severe and Rare Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Peking Union Medical College Hospital, No. 1, Shuaifuyuan, Dongcheng District, Beijing 100730, China
| | - Xiao Li
- Department of Radiology, State Key Laboratory of Complex Severe and Rare Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Peking Union Medical College Hospital, No. 1, Shuaifuyuan, Dongcheng District, Beijing 100730, China
| | - Jian Cao
- Department of Radiology, State Key Laboratory of Complex Severe and Rare Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Peking Union Medical College Hospital, No. 1, Shuaifuyuan, Dongcheng District, Beijing 100730, China
| | - Jian Wang
- Department of Radiology, State Key Laboratory of Complex Severe and Rare Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Peking Union Medical College Hospital, No. 1, Shuaifuyuan, Dongcheng District, Beijing 100730, China
| | - Zhi-Cheng Jing
- Department of Cardiology, State Key Laboratory of Complex Severe and Rare Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Peking Union Medical College Hospital, No. 1, Shuaifuyuan, Dongcheng District, Beijing 100730, China
| | - Sen Li
- Department of Research & Development, Yizhun Medical AI Co., Ltd., 12th Floor 12, Block A, Beihang Zhizhen Building, No. 7 Zhichun Road, Haidian District, Beijing 100088, China
| | - Hao Liu
- Department of Research & Development, Yizhun Medical AI Co., Ltd., 12th Floor 12, Block A, Beihang Zhizhen Building, No. 7 Zhichun Road, Haidian District, Beijing 100088, China
| | - Xin Wang
- Department of Research & Development, Yizhun Medical AI Co., Ltd., 12th Floor 12, Block A, Beihang Zhizhen Building, No. 7 Zhichun Road, Haidian District, Beijing 100088, China
| | - Zheng-Yu Jin
- Department of Radiology, State Key Laboratory of Complex Severe and Rare Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Peking Union Medical College Hospital, No. 1, Shuaifuyuan, Dongcheng District, Beijing 100730, China
- Correspondence: (Y.-N.W.); (Z.-Y.J.)
| | - Yi-Ning Wang
- Department of Radiology, State Key Laboratory of Complex Severe and Rare Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Peking Union Medical College Hospital, No. 1, Shuaifuyuan, Dongcheng District, Beijing 100730, China
- Correspondence: (Y.-N.W.); (Z.-Y.J.)
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Fajkić A, Lepara O, Dervišević A, Kurtović A, Džubur A, Ejubović M, Đozić A, Mujaković A, Jahić R. Relationship between Adipocytokines, Nontraditional Anthropometric Indices and Coronary Heart Disease Risk in Diabetic Patients. CURRENT HEALTH SCIENCES JOURNAL 2022; 48:365-372. [PMID: 37304801 PMCID: PMC10248484 DOI: 10.12865/chsj.48.04.01] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 12/18/2022] [Indexed: 06/13/2023]
Abstract
INTRODUCTION Diabetes mellitus type 2 (T2DM) significantly increase the risk of cardiovascular (CV) disease morbidity and mortality. This study aimed to evaluate the potential of some novel anthropometric indices and adipocytokines to evaluate CV risk among T2DM patients. METHODS A total of 112 patients (men, 57; women, 55) with T2DM visiting Family Medicine and Endocrine counseling in the area of Health centers of Sarajevo Canton were included in this study. The sera samples were analyzed for fasting blood glucose (FBG), HbA1c, lipid profile parameters, adiponectin, and resistin levels. The Adiponectin/Resistin Index (A/R Index) was estimated using the formula. The novel anthropometric measurements, including the Conicity index (CI), Lipid Accumulation Product (LAP), visceral adiposity index (VAI), abdominal volume index (AVI), and Body adiposity index (BAI) were estimated. The 10-year risk for coronary heart disease (CHD) and fatal coronary heart disease (fCHD) is calculated by using UKPDS Risk software. RESULTS The adiponectin was shown as a statistically significant negative association with CHD in female subjects, and the A/R index as a statistically significant association with CHD and fCHD in male subjects. The AVI is superior to the CI, LAP, VAI, and BAI in assessing cardiometabolic risk in T2DM patients. CONCLUSIONS Our study indicated that measuring adiponectin and A/R index, together with measuring AVI as a measure of general volume, can be used as surrogates in the evaluation of high cardiovascular risk among T2DM patients.
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Affiliation(s)
- Almir Fajkić
- Department of Pathophysiology, Faculty of Medicine, University of Sarajevo, Sarajevo, Bosnia and Herzegovina
| | - Orhan Lepara
- Department of Human Physiology, Faculty of Medicine, University of Sarajevo, Sarajevo, Bosnia and Herzegovina
| | - Amela Dervišević
- Department of Human Physiology, Faculty of Medicine, University of Sarajevo, Sarajevo, Bosnia and Herzegovina
| | - Avdo Kurtović
- Primary Healthcare Centre Gračanica, Bosnia and Herzegovina
| | - Alen Džubur
- Department for Cardiology, Clinic for Heart, Blood Vessel and Rheumatic Diseases. Clinical Center University of Sarajevo, Sarajevo, Bosnia and Herzegovina
| | - Malik Ejubović
- Department of Internal Diseases, Cantonal Hospital Zenica, Bosnia and Herzegovina
| | - Ada Đozić
- General Hospital "Prim. dr Abdulah Nakaš" Sarajevo, Bosnia and Herzegovina
| | - Aida Mujaković
- General Hospital "Prim. dr Abdulah Nakaš" Sarajevo, Bosnia and Herzegovina
| | - Rijad Jahić
- Faculty of Medicine, University of Sarajevo, Sarajevo, Bosnia and Herzegovina
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Velasco C, Fletcher TJ, Botnar RM, Prieto C. Artificial intelligence in cardiac magnetic resonance fingerprinting. Front Cardiovasc Med 2022; 9:1009131. [PMID: 36204566 PMCID: PMC9530662 DOI: 10.3389/fcvm.2022.1009131] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 08/30/2022] [Indexed: 11/13/2022] Open
Abstract
Magnetic resonance fingerprinting (MRF) is a fast MRI-based technique that allows for multiparametric quantitative characterization of the tissues of interest in a single acquisition. In particular, it has gained attention in the field of cardiac imaging due to its ability to provide simultaneous and co-registered myocardial T1 and T2 mapping in a single breath-held cardiac MRF scan, in addition to other parameters. Initial results in small healthy subject groups and clinical studies have demonstrated the feasibility and potential of MRF imaging. Ongoing research is being conducted to improve the accuracy, efficiency, and robustness of cardiac MRF. However, these improvements usually increase the complexity of image reconstruction and dictionary generation and introduce the need for sequence optimization. Each of these steps increase the computational demand and processing time of MRF. The latest advances in artificial intelligence (AI), including progress in deep learning and the development of neural networks for MRI, now present an opportunity to efficiently address these issues. Artificial intelligence can be used to optimize candidate sequences and reduce the memory demand and computational time required for reconstruction and post-processing. Recently, proposed machine learning-based approaches have been shown to reduce dictionary generation and reconstruction times by several orders of magnitude. Such applications of AI should help to remove these bottlenecks and speed up cardiac MRF, improving its practical utility and allowing for its potential inclusion in clinical routine. This review aims to summarize the latest developments in artificial intelligence applied to cardiac MRF. Particularly, we focus on the application of machine learning at different steps of the MRF process, such as sequence optimization, dictionary generation and image reconstruction.
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Affiliation(s)
- Carlos Velasco
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom
- *Correspondence: Carlos Velasco
| | - Thomas J. Fletcher
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom
| | - René M. Botnar
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom
- Institute for Biological and Medical Engineering, Pontificia Universidad Católica de Chile, Santiago, Chile
- Millennium Institute for Intelligent Healthcare Engineering, Santiago, Chile
| | - Claudia Prieto
- School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom
- Institute for Biological and Medical Engineering, Pontificia Universidad Católica de Chile, Santiago, Chile
- Millennium Institute for Intelligent Healthcare Engineering, Santiago, Chile
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Mehta C, Shah R, Yanamala N, Sengupta PP. Cardiovascular Imaging Databases: Building Machine Learning Algorithms for Regenerative Medicine. CURRENT STEM CELL REPORTS 2022. [DOI: 10.1007/s40778-022-00216-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Manickam P, Mariappan SA, Murugesan SM, Hansda S, Kaushik A, Shinde R, Thipperudraswamy SP. Artificial Intelligence (AI) and Internet of Medical Things (IoMT) Assisted Biomedical Systems for Intelligent Healthcare. BIOSENSORS 2022; 12:bios12080562. [PMID: 35892459 PMCID: PMC9330886 DOI: 10.3390/bios12080562] [Citation(s) in RCA: 71] [Impact Index Per Article: 35.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 07/20/2022] [Accepted: 07/21/2022] [Indexed: 05/05/2023]
Abstract
Artificial intelligence (AI) is a modern approach based on computer science that develops programs and algorithms to make devices intelligent and efficient for performing tasks that usually require skilled human intelligence. AI involves various subsets, including machine learning (ML), deep learning (DL), conventional neural networks, fuzzy logic, and speech recognition, with unique capabilities and functionalities that can improve the performances of modern medical sciences. Such intelligent systems simplify human intervention in clinical diagnosis, medical imaging, and decision-making ability. In the same era, the Internet of Medical Things (IoMT) emerges as a next-generation bio-analytical tool that combines network-linked biomedical devices with a software application for advancing human health. In this review, we discuss the importance of AI in improving the capabilities of IoMT and point-of-care (POC) devices used in advanced healthcare sectors such as cardiac measurement, cancer diagnosis, and diabetes management. The role of AI in supporting advanced robotic surgeries developed for advanced biomedical applications is also discussed in this article. The position and importance of AI in improving the functionality, detection accuracy, decision-making ability of IoMT devices, and evaluation of associated risks assessment is discussed carefully and critically in this review. This review also encompasses the technological and engineering challenges and prospects for AI-based cloud-integrated personalized IoMT devices for designing efficient POC biomedical systems suitable for next-generation intelligent healthcare.
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Affiliation(s)
- Pandiaraj Manickam
- Electrodics and Electrocatalysis Division, CSIR-Central Electrochemical Research Institute (CECRI), Karaikudi, Sivagangai 630003, Tamil Nadu, India; (S.A.M.); (S.M.M.)
- Academy of Scientific & Innovative Research (AcSIR), Ghaziabad 201002, Uttar Pradesh, India; (S.H.); (S.P.T.)
- Correspondence:
| | - Siva Ananth Mariappan
- Electrodics and Electrocatalysis Division, CSIR-Central Electrochemical Research Institute (CECRI), Karaikudi, Sivagangai 630003, Tamil Nadu, India; (S.A.M.); (S.M.M.)
- Academy of Scientific & Innovative Research (AcSIR), Ghaziabad 201002, Uttar Pradesh, India; (S.H.); (S.P.T.)
| | - Sindhu Monica Murugesan
- Electrodics and Electrocatalysis Division, CSIR-Central Electrochemical Research Institute (CECRI), Karaikudi, Sivagangai 630003, Tamil Nadu, India; (S.A.M.); (S.M.M.)
| | - Shekhar Hansda
- Academy of Scientific & Innovative Research (AcSIR), Ghaziabad 201002, Uttar Pradesh, India; (S.H.); (S.P.T.)
- Corrosion and Materials Protection Division, CSIR-Central Electrochemical Research Institute (CECRI), Karaikudi, Sivagangai 630003, Tamil Nadu, India
| | - Ajeet Kaushik
- School of Engineering, University of Petroleum and Energy Studies (UPES), Dehradun 248001, Uttarakhand, India;
- NanoBioTech Laboratory, Department of Environmental Engineering, Florida Polytechnic University, Lakeland, FL 33805-8531, USA
| | - Ravikumar Shinde
- Department of Zoology, Shri Pundlik Maharaj Mahavidyalaya Nandura, Buldana 443404, Maharashtra, India;
| | - S. P. Thipperudraswamy
- Academy of Scientific & Innovative Research (AcSIR), Ghaziabad 201002, Uttar Pradesh, India; (S.H.); (S.P.T.)
- Central Instrument Facility, CSIR-Central Electrochemical Research Institute, Karaikudi, Sivagangai 630003, Tamil Nadu, India
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41
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Wellnhofer E. Real-World and Regulatory Perspectives of Artificial Intelligence in Cardiovascular Imaging. Front Cardiovasc Med 2022; 9:890809. [PMID: 35935648 PMCID: PMC9354141 DOI: 10.3389/fcvm.2022.890809] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2022] [Accepted: 06/13/2022] [Indexed: 12/02/2022] Open
Abstract
Recent progress in digital health data recording, advances in computing power, and methodological approaches that extract information from data as artificial intelligence are expected to have a disruptive impact on technology in medicine. One of the potential benefits is the ability to extract new and essential insights from the vast amount of data generated during health care delivery every day. Cardiovascular imaging is boosted by new intelligent automatic methods to manage, process, segment, and analyze petabytes of image data exceeding historical manual capacities. Algorithms that learn from data raise new challenges for regulatory bodies. Partially autonomous behavior and adaptive modifications and a lack of transparency in deriving evidence from complex data pose considerable problems. Controlling new technologies requires new controlling techniques and ongoing regulatory research. All stakeholders must participate in the quest to find a fair balance between innovation and regulation. The regulatory approach to artificial intelligence must be risk-based and resilient. A focus on unknown emerging risks demands continuous surveillance and clinical evaluation during the total product life cycle. Since learning algorithms are data-driven, high-quality data is fundamental for good machine learning practice. Mining, processing, validation, governance, and data control must account for bias, error, inappropriate use, drifts, and shifts, particularly in real-world data. Regulators worldwide are tackling twenty-first century challenges raised by "learning" medical devices. Ethical concerns and regulatory approaches are presented. The paper concludes with a discussion on the future of responsible artificial intelligence.
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Affiliation(s)
- Ernst Wellnhofer
- Institute of Computer-Assisted Cardiovascular Medicine, Charité University Medicine Berlin, Berlin, Germany
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42
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Magherini R, Mussi E, Volpe Y, Furferi R, Buonamici F, Servi M. Machine Learning for Renal Pathologies: An Updated Survey. SENSORS 2022; 22:s22134989. [PMID: 35808481 PMCID: PMC9269842 DOI: 10.3390/s22134989] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Revised: 06/22/2022] [Accepted: 06/29/2022] [Indexed: 12/04/2022]
Abstract
Within the literature concerning modern machine learning techniques applied to the medical field, there is a growing interest in the application of these technologies to the nephrological area, especially regarding the study of renal pathologies, because they are very common and widespread in our society, afflicting a high percentage of the population and leading to various complications, up to death in some cases. For these reasons, the authors have considered it appropriate to collect, using one of the major bibliographic databases available, and analyze the studies carried out until February 2022 on the use of machine learning techniques in the nephrological field, grouping them according to the addressed pathologies: renal masses, acute kidney injury, chronic kidney disease, kidney stone, glomerular disease, kidney transplant, and others less widespread. Of a total of 224 studies, 59 were analyzed according to inclusion and exclusion criteria in this review, considering the method used and the type of data available. Based on the study conducted, it is possible to see a growing trend and interest in the use of machine learning applications in nephrology, becoming an additional tool for physicians, which can enable them to make more accurate and faster diagnoses, although there remains a major limitation given the difficulty in creating public databases that can be used by the scientific community to corroborate and eventually make a positive contribution in this area.
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Galkin F, Kochetov K, Keller M, Zhavoronkov A, Etcoff N. Optimizing future well-being with artificial intelligence: self-organizing maps (SOMs) for the identification of islands of emotional stability. Aging (Albany NY) 2022; 14:4935-4958. [PMID: 35723468 PMCID: PMC9271294 DOI: 10.18632/aging.204061] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2022] [Accepted: 04/25/2022] [Indexed: 12/18/2022]
Abstract
In this article, we present a deep learning model of human psychology that can predict one’s current age and future well-being. We used the model to demonstrate that one’s baseline well-being is not the determining factor of future well-being, as posited by hedonic treadmill theory. Further, we have created a 2D map of human psychotypes and identified the regions that are most vulnerable to depression. This map may be used to provide personalized recommendations for maximizing one’s future well-being.
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Affiliation(s)
| | | | | | - Alex Zhavoronkov
- Deep Longevity Limited, Hong Kong.,Insilico Medicine, Hong Kong.,Buck Institute for Research on Aging, Novato, CA 94945, USA
| | - Nancy Etcoff
- Department of Psychiatry, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02115, USA
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Olszta M, Hopkins D, Fiedler KR, Oostrom M, Akers S, Spurgeon SR. An Automated Scanning Transmission Electron Microscope Guided by Sparse Data Analytics. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2022; 28:1-11. [PMID: 35686442 DOI: 10.1017/s1431927622012065] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Artificial intelligence (AI) promises to reshape scientific inquiry and enable breakthrough discoveries in areas such as energy storage, quantum computing, and biomedicine. Scanning transmission electron microscopy (STEM), a cornerstone of the study of chemical and materials systems, stands to benefit greatly from AI-driven automation. However, present barriers to low-level instrument control, as well as generalizable and interpretable feature detection, make truly automated microscopy impractical. Here, we discuss the design of a closed-loop instrument control platform guided by emerging sparse data analytics. We hypothesize that a centralized controller, informed by machine learning combining limited a priori knowledge and task-based discrimination, could drive on-the-fly experimental decision-making. This platform may unlock practical, automated analysis of a variety of material features, enabling new high-throughput and statistical studies.
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Affiliation(s)
- Matthew Olszta
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA 99352, USA
| | - Derek Hopkins
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA
| | - Kevin R Fiedler
- College of Arts and Sciences, Washington State University - Tri-Cities, Richland, WA 99354, USA
| | - Marjolein Oostrom
- National Security Directorate, Pacific Northwest National Laboratory, Richland, WA 99352, USA
| | - Sarah Akers
- National Security Directorate, Pacific Northwest National Laboratory, Richland, WA 99352, USA
| | - Steven R Spurgeon
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA 99352, USA
- Department of Physics, University of Washington, Seattle, WA 98195, USA
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Mohammed P, Begum SJ. Developing an Integrated Model for Heart Disease Diagnosis (IM-HDD) using ensemble classification methods. JOURNAL OF INTELLIGENT & FUZZY SYSTEMS 2022. [DOI: 10.3233/jifs-220306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
In present scenario, Heart Disease has become the vital cause of mortality and diagnosis of heart diseases is a great confrontation in the field of medical data analysis. Data Mining is an efficient technique for processing and analyzing larger databases for deriving hidden knowledge appropriately. Hence, it is incorporated in medical data analysis for assisting in effective decision making and disease predictions. With that concern, this paper concentrates on framing an Integrated Model for Heart Disease Diagnosis (IM-HDD) using the advanced data mining conceits. The model considers the significant features of patient data that are available in benchmark datasets. Here, the main objective of the proposed model is to enhance the classification accuracy of patient data on classes under NORMAL and ABNORMAL. For enhancing the classification accuracy, the proposed integrated model utilizes the algorithms such as Decision Tree Algorithm, Naive Baye’s Classification and Ensemble Classifiers called Random Forest and Bagging. Further, performance evaluation is performed for analyzing the proposed work. For that, images from UCI repository are utilized and the comparative analysis shows that the proposed work produces better results than the existing models compared.
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Affiliation(s)
- Parves Mohammed
- Sree Chaitanya College of Engineering, Affiliated to JNTUH, India
| | - S. Jabeen Begum
- Velalar College of Engineering and Technology, Affiliated to Anna University, India
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46
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Coronary Artery Disease Detection Model Based on Class Balancing Methods and LightGBM Algorithm. ELECTRONICS 2022. [DOI: 10.3390/electronics11091495] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Coronary artery disease (CAD) is a disease with high mortality and disability. By 2019, there were 197 million CAD patients in the world. Additionally, the number of disability-adjusted life years (DALYs) owing to CAD reached 182 million. It is widely known that the early and accurate diagnosis of CAD is the most efficient method to reduce the damage of CAD. In medical practice, coronary angiography is considered to be the most reliable basis for CAD diagnosis. However, unfortunately, due to the limitation of inspection equipment and expert resources, many low- and middle-income countries do not have the ability to perform coronary angiography. This has led to a large loss of life and medical burden. Therefore, many researchers expect to realize the accurate diagnosis of CAD based on conventional medical examination data with the help of machine learning and data mining technology. The goal of this study is to propose a model for early, accurate and rapid detection of CAD based on common medical test data. This model took the classical logistic regression algorithm, which is the most commonly used in medical model research as the classifier. The advantages of feature selection and feature combination of tree models were used to solve the problem of manual feature engineering in logical regression. At the same time, in order to solve the class imbalance problem in Z-Alizadeh Sani dataset, five different class balancing methods were applied to balance the dataset. In addition, according to the characteristics of the dataset, we also adopted appropriate preprocessing methods. These methods significantly improved the classification performance of logistic regression classifier in terms of accuracy, recall, precision, F1 score, specificity and AUC when used for CAD detection. The best accuracy, recall, F1 score, precision, specificity and AUC were 94.7%, 94.8%, 94.8%, 95.3%, 94.5% and 0.98, respectively. Experiments and results have confirmed that, according to common medical examination data, our proposed model can accurately identify CAD patients in the early stage of CAD. Our proposed model can be used to help clinicians make diagnostic decisions in clinical practice.
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Mohamed Suhail M, Abdul Razak T. Cardiac disease detection from ECG signal using discrete wavelet transform with machine learning method. Diabetes Res Clin Pract 2022; 187:109852. [PMID: 35341778 DOI: 10.1016/j.diabres.2022.109852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Accepted: 03/22/2022] [Indexed: 11/18/2022]
Abstract
OBJECTIVES Cardiac disease is the leading cause of death worldwide. If a proper diagnosis is made early, cardiovascular problems can be prevented. The ECG test is a diagnostic method used on the screen for heart disease. Based on a combination of multi-field extraction and nonlinear analysis of ECG data, this paper presents a framework for automated detection of heart disease. The main aim of this study is to develop a model for future diagnosis of cardiac vascular disease using ECG analysis and symptom-based detection. METHODS Discrete wavelet transform and Nonlinear Vector Decomposed Neural Network methods are used to predict Cardiac disease. Here is the discrete wavelet transform used for preprocessing to remove unwanted noise or artifacts. The neural network was fed with thirteen clinical features as input which was then trained using a non-linear vector decomposition of the presence or absence of heart disease. RESULTS The modules were implemented, trained, and tested using UCI and Physio net data repositories. The sensitivity, specificity and accuracy of this research work are 92.0%, 89.33% and 90.67% CONCLUSIONS: The proposed approach can discover complex non-linear correlations between dependent and independent variables without requiring traditional statistical training. The suggested approach improves ECG classification accuracy, allowing for more accurate cardiac disease diagnosis. The accuracy of ECG categorization in identifying cardiac illness is far greater than these other approaches.
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Affiliation(s)
- M Mohamed Suhail
- Department of Computer Science, Jamal Mohamed College, Tiruchirappalli, India.
| | - T Abdul Razak
- Department of Computer Science, Jamal Mohamed College, Tiruchirappalli, India
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Stimm J, Guenthner C, Kozerke S, Stoeck CT. Comparison of interpolation methods of predominant cardiomyocyte orientation from in vivo and ex vivo cardiac diffusion tensor imaging data. NMR IN BIOMEDICINE 2022; 35:e4667. [PMID: 34964179 PMCID: PMC9285076 DOI: 10.1002/nbm.4667] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 11/25/2021] [Accepted: 11/26/2021] [Indexed: 06/14/2023]
Abstract
Cardiac electrophysiology and cardiac mechanics both depend on the average cardiomyocyte long-axis orientation. In the realm of personalized medicine, knowledge of the patient-specific changes in cardiac microstructure plays a crucial role. Patient-specific computational modelling has emerged as a tool to better understand disease progression. In vivo cardiac diffusion tensor imaging (cDTI) is a vital tool to non-destructively measure the average cardiomyocyte long-axis orientation in the heart. However, cDTI suffers from long scan times, rendering volumetric, high-resolution acquisitions challenging. Consequently, interpolation techniques are needed to populate bio-mechanical models with patient-specific average cardiomyocyte long-axis orientations. In this work, we compare five interpolation techniques applied to in vivo and ex vivo porcine input data. We compare two tensor interpolation approaches, one rule-based approximation, and two data-driven, low-rank models. We demonstrate the advantage of tensor interpolation techniques, resulting in lower interpolation errors than do low-rank models and rule-based methods adapted to cDTI data. In an ex vivo comparison, we study the influence of three imaging parameters that can be traded off against acquisition time: in-plane resolution, signal to noise ratio, and number of acquired short-axis imaging slices.
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Affiliation(s)
- Johanna Stimm
- Institute for Biomedical EngineeringUniversity and ETH ZurichZurichSwitzerland
| | - Christian Guenthner
- Institute for Biomedical EngineeringUniversity and ETH ZurichZurichSwitzerland
| | - Sebastian Kozerke
- Institute for Biomedical EngineeringUniversity and ETH ZurichZurichSwitzerland
| | - Christian T. Stoeck
- Institute for Biomedical EngineeringUniversity and ETH ZurichZurichSwitzerland
- Division of Surgical ResearchUniversity Hospital ZurichUniversity ZurichSwitzerland
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Automated Classification of Left Ventricular Hypertrophy on Cardiac MRI. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12094151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Left ventricular hypertrophy is an independent predictor of coronary artery disease, stroke, and heart failure. Our aim was to detect LVH cardiac magnetic resonance (CMR) scans with automatic methods. We developed an ensemble model based on a three-dimensional version of ResNet. The input of the network included short-axis and long-axis images. We also introduced a standardization methodology to unify the input images for noise reduction. The output of the network is the decision whether the patient has hypertrophy or not. We included 428 patients (mean age: 49 ± 18 years, 262 males) with LVH (346 hypertrophic cardiomyopathy, 45 cardiac amyloidosis, 11 Anderson–Fabry disease, 16 endomyocardial fibrosis, 10 aortic stenosis). Our control group consisted of 234 healthy subjects (mean age: 35 ± 15 years; 126 males) without any known cardiovascular diseases. The developed machine-learning-based model achieved a 92% F1-score and 97% recall on the hold-out dataset, which is comparable to the medical experts. Experiments showed that the standardization method was able to significantly boost the performance of the algorithm. The algorithm could improve the diagnostic accuracy, and it could open a new door to AI applications in CMR.
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Huellebrand M, Ivantsits M, Tautz L, Kelle S, Hennemuth A. A Collaborative Approach for the Development and Application of Machine Learning Solutions for CMR-Based Cardiac Disease Classification. Front Cardiovasc Med 2022; 9:829512. [PMID: 35360025 PMCID: PMC8960112 DOI: 10.3389/fcvm.2022.829512] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2021] [Accepted: 02/07/2022] [Indexed: 01/22/2023] Open
Abstract
The quality and acceptance of machine learning (ML) approaches in cardiovascular data interpretation depends strongly on model design and training and the interaction with the clinical experts. We hypothesize that a software infrastructure for the training and application of ML models can support the improvement of the model training and provide relevant information for understanding the classification-relevant data features. The presented solution supports an iterative training, evaluation, and exploration of machine-learning-based multimodal data interpretation methods considering cardiac MRI data. Correction, annotation, and exploration of clinical data and interpretation of results are supported through dedicated interactive visual analytics tools. We test the presented concept with two use cases from the ACDC and EMIDEC cardiac MRI image analysis challenges. In both applications, pre-trained 2D U-Nets are used for segmentation, and classifiers are trained for diagnostic tasks using radiomics features of the segmented anatomical structures. The solution was successfully used to identify outliers in automatic segmentation and image acquisition. The targeted curation and addition of expert annotations improved the performance of the machine learning models. Clinical experts were supported in understanding specific anatomical and functional characteristics of the assigned disease classes.
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