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Bayliss J, Bittencourt-Silva GB, Branch WR, Bruessow C, Collins S, Congdon TCE, Conradie W, Curran M, Daniels SR, Darbyshire I, Farooq H, Fishpool L, Grantham G, Magombo Z, Matimele H, Monadjem A, Monteiro J, Osborne J, Saunders J, Smith P, Spottiswoode CN, Taylor PJ, Timberlake J, Tolley KA, Tovela É, Platts PJ. A biogeographical appraisal of the threatened South East Africa Montane Archipelago ecoregion. Sci Rep 2024; 14:5971. [PMID: 38472297 PMCID: PMC10933300 DOI: 10.1038/s41598-024-54671-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 02/15/2024] [Indexed: 03/14/2024] Open
Abstract
Recent biological surveys of ancient inselbergs in southern Malawi and northern Mozambique have led to the discovery and description of many species new to science, and overlapping centres of endemism across multiple taxa. Combining these endemic taxa with data on geology and climate, we propose the 'South East Africa Montane Archipelago' (SEAMA) as a distinct ecoregion of global biological importance. The ecoregion encompasses 30 granitic inselbergs reaching > 1000 m above sea level, hosting the largest (Mt Mabu) and smallest (Mt Lico) mid-elevation rainforests in southern Africa, as well as biologically unique montane grasslands. Endemic taxa include 127 plants, 45 vertebrates (amphibians, reptiles, birds, mammals) and 45 invertebrate species (butterflies, freshwater crabs), and two endemic genera of plants and reptiles. Existing dated phylogenies of endemic animal lineages suggests this endemism arose from divergence events coinciding with repeated isolation of these mountains from the pan-African forests, together with the mountains' great age and relative climatic stability. Since 2000, the SEAMA has lost 18% of its primary humid forest cover (up to 43% in some sites)-one of the highest deforestation rates in Africa. Urgently rectifying this situation, while addressing the resource needs of local communities, is a global priority for biodiversity conservation.
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Affiliation(s)
- Julian Bayliss
- Department of Biological and Medical Sciences, Oxford Brookes University, Oxford, OX3 0BP, UK.
- African Butterfly Research Institute, P.O. Box 14308, Nairobi, 0800, Kenya.
- Rede Para Gestão Comunitária de Recursos Naturais (ReGeCom), Maputo, Mozambique.
| | | | - William R Branch
- Port Elizabeth Museum (Bayworld), P.O. Box 13147, Humewood, 6013, South Africa
| | - Carl Bruessow
- Mount Mulanje Conservation Trust, P.O. Box 139, Mulanje, Malawi
| | - Steve Collins
- African Butterfly Research Institute, P.O. Box 14308, Nairobi, 0800, Kenya
| | - T Colin E Congdon
- African Butterfly Research Institute, P.O. Box 14308, Nairobi, 0800, Kenya
| | - Werner Conradie
- Port Elizabeth Museum (Bayworld), P.O. Box 13147, Humewood, 6013, South Africa
- Department of Nature Conservation Management, Faculty of Science, Nelson Mandela University, George, South Africa
| | - Michael Curran
- Department of Food System Science, Research Institute of Organic Agriculture (FiBL), Ackerstrasse 113, P.O. Box 219, 5070, Frick, Switzerland
| | - Savel R Daniels
- Department of Botany and Zoology, University of Stellenbosch, Private Bag X1, Matieland, 7602, South Africa
| | | | - Harith Farooq
- Faculty of Natural Sciences, Lúrio University, Pemba, Mozambique
- Center for Macroecology, Evolution and Climate, Globe Institute, University of Copenhagen, Copenhagen, Denmark
| | - Lincoln Fishpool
- BirdLife International, The David Attenborough Building, Pembroke Street, Cambridge, CB2 3QZ, UK
| | - Geoffrey Grantham
- Department of Geology, University of Johannesburg, Johannesburg, South Africa
| | - Zacharia Magombo
- National Herbarium and Botanical Gardens of Malawi, Zomba, Malawi
| | - Hermenegildo Matimele
- Herbarium, Instituto de Investigaçao Agraria de Moçambique, P.O.Box 3658, Maputo, Mozambique
- DICE, University of Kent, Canterbury, CT2 7NZ, UK
- Wildlife Conservation Society, 163 Orlando Mendes Street, Maputo, Mozambique
| | - Ara Monadjem
- Department of Biological Sciences, University of Eswatini, Kwaluseni, Eswatini
- Mammal Research Institute, Department of Zoology & Entomology, University of Pretoria, Hatfield, South Africa
| | - Jose Monteiro
- Rede Para Gestão Comunitária de Recursos Naturais (ReGeCom), Maputo, Mozambique
| | - Jo Osborne
- Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AE, UK
| | - Justin Saunders
- Africa Bees Ltd, Belgrave House, 39-43 Monument Hill, Weybridge, Surrey, KT13 8RN, UK
| | - Paul Smith
- Botanic Gardens Conservation International (BGCI), 199 Kew Road, Richmond, Surrey, TW9 3BW, UK
| | - Claire N Spottiswoode
- Department of Zoology, University of Cambridge, Cambridge, CB2 3EJ, UK
- FitzPatrick Institute of African Ornithology, Department of Biological Sciences, University of Cape Town, Cape Town, South Africa
| | - Peter J Taylor
- Biological Sciences Department, University of Venda, Thohoyandou, South Africa
- Afromontane Research Unit and Department of Zoology & Entomology, University of the Free State, Bloemfontein, South Africa
| | | | - Krystal A Tolley
- South African National Biodiversity Institute, Kirstenbosch Research Centre, Claremont, Private Bag X7, Cape Town, 7735, South Africa
- Centre for Ecological Genomics and Wildlife Conservation, University of Johannesburg, Auckland Park, Johannesburg, 2006, South Africa
| | - Érica Tovela
- Museu de História Natural, Praça Travessia do Zambeze, 104, Maputo, Mozambique
| | - Philip J Platts
- Department of Environment and Geography, University of York, Wentworth Way, Heslington, York, YO10 5NG, UK
- BeZero Carbon Ltd, 25 Christopher Street, London, E2, UK
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Drury JP, Clavel J, Tobias JA, Rolland J, Sheard C, Morlon H. Limited ecological opportunity influences the tempo of morphological evolution in birds. Curr Biol 2024; 34:661-669.e4. [PMID: 38218182 DOI: 10.1016/j.cub.2023.12.055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Revised: 11/27/2023] [Accepted: 12/18/2023] [Indexed: 01/15/2024]
Abstract
According to classic models of lineage diversification and adaptive radiation, phenotypic evolution should accelerate in the context of ecological opportunity and slow down when niches become saturated.1,2 However, only weak support for these ideas has been found in nature, perhaps because most analyses make the biologically unrealistic assumption that clade members contribute equally to reducing ecological opportunity, even when they occur in different continents or specialize on different habitats and diets. To view this problem through a different lens, we adapted a new phylogenetic modeling approach that accounts for the fact that competition for ecological opportunity only occurs between species that coexist and share similar habitats and diets. Applying this method to trait data for nearly all extant species of landbirds,3 we find a widespread signature of decelerating trait evolution in lineages adapted to similar habitats or diets. The strength of this pattern was consistent across latitudes when comparing tropical and temperate assemblages. Our results provide little support for the idea that increased diversity and tighter packing of niches accentuates evolutionary slowdowns in the tropics and instead suggest that limited ecological opportunity can be an important factor determining the rate of morphological diversification at a global scale.
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Affiliation(s)
- Jonathan P Drury
- Department of Biosciences, Durham University, Stockton Road, Durham DH1 3LE, UK.
| | - Julien Clavel
- Université Claude Bernard Lyon 1, LEHNA UMR 5023, CNRS, ENTPE, F-69622 Villeurbanne, France
| | - Joseph A Tobias
- Department of Life Sciences, Imperial College London, Ascot SL5 7PY, UK
| | - Jonathan Rolland
- CNRS, UMR5174, Laboratoire Evolution et Diversité Biologique, Université Toulouse 3 Paul Sabatier, Bâtiment 4R1, 118 Route de Narbonne, 31062 Toulouse, France
| | - Catherine Sheard
- School of Earth Sciences, University of Bristol, Bristol BS8 1RL, UK; School of Biological Sciences, University of Aberdeen, Aberdeen AB24 2TZ, UK
| | - Hélène Morlon
- Institut de Biologie - École Normale Supérieure, Université PSL, CNRS, INSERM, 75005 Paris, France
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Climate Cycles, Habitat Stability, and Lineage Diversification in an African Biodiversity Hotspot. DIVERSITY 2023. [DOI: 10.3390/d15030394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
Abstract
The Eastern Arc Mountains of Tanzania and Kenya, a montane archipelago of 13 uplifted fault blocks (sky islands) isolated by lowland arid savanna, are a center of exceptional biological endemism. Under the influence of humid winds from the Indian Ocean, forests and associated species may have persisted in this region since the final uplift of these blocks in the late Miocene. Today, these mountains are inhabited by a remarkable diversity of bird species. To better understand the evolutionary processes behind this diversity, we combined molecular phylogenetic studies of East African montane birds with paleoclimate modeling of its montane forests. Across its largest lowland barrier, the 125 km between the Usambara and Nguru/Nguu Mountains, 10 of the 14 bird lineages exhibited a phylogeographic break. Using Bayesian methods, we established that at least three periods of forest contraction and expansion affected the diversification of Eastern Arc birds. Habitat distribution models suggest that lower-elevation hills may have acted as stepping-stones connecting isolated highlands to allow for the dispersal of montane forest-dependent species across them. Periods of vicariance during paleoclimatic cycles extending back through the Last Glacial Maximum would have then isolated these populations within the highlands they had reached. The broad distribution of neoendemic species across the mountains of East Africa provides evidence of climate cycling as a driver of lineage diversification. The high incidence of narrow-range endemism of paleoendemic species on the Usambara, Uluguru, and Udzungwa Mountains of this region is harder to explain. Our paleoclimate models retrodicted the persistence of montane forest during climate cycles on several Eastern Arc sky islands but not on the Southern Tanzania Volcanic Highlands. Consistent with recent theoretical work, different rates of local extinction rather than increased rates of lineage diversification may explain the pattern of excessive narrow-range endemism on some sky islands over others. Thus, a regional filtering effect is generated, with paleoendemics maintaining populations through time only in areas where habitat persisted, providing a credible explanation for the dramatic variance in levels of endemism among different East African sky islands.
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A near-complete and time-calibrated phylogeny of the Old World flycatchers, robins and chats (Aves, Muscicapidae). Mol Phylogenet Evol 2023; 178:107646. [PMID: 36265831 DOI: 10.1016/j.ympev.2022.107646] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Revised: 10/08/2022] [Accepted: 10/12/2022] [Indexed: 11/06/2022]
Abstract
The Old World flycatchers, robins and chats (Aves, Muscicapidae) are a diverse songbird family with over three hundred species. Despite continuous efforts over the past two decades, there is still no comprehensive and well-resolved species-level phylogeny for Muscicapidae. Here we present a supermatrix phylogeny that includes all 50 currently recognized genera and ca. 92% of all the species, built using data from up to 15 mitochondrial and 13 nuclear loci. In addition to assembling nucleotide sequences available in public databases, we also extracted sequences from the genome assemblies and raw sequencing reads from GenBank and included a few unpublished sequences. Our analyses resolved the phylogenetic position for several previously unsampled taxa, for example, the Grand Comoro Flycatcher Humblotia flavirostris, the Collared Palm Thrush Cichladusa arquata, and the Taiwan Whistling-Thrush Myophonus insularis, etc. We also provide taxonomic recommendations for genera that exhibit paraphyly or polyphyly. Our results suggest that Muscicapidae diverged from Turdidae (thrushes and allies) in the early Miocene, and the most recent common ancestors for the four subfamilies (Muscicapinae, Niltavinae, Cossyphinae and Saxicolinae) all arose around the middle Miocene.
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