Mesopelagic Prokaryotes Alter Surface Phytoplankton Production during Simulated Deep Mixing Experiments in Eastern Mediterranean Sea Waters

Distinct Communities of Bacteria and Unicellular Eukaryotes in the Different Water Masses of Cretan Passage Water Column (Eastern Mediterranean Sea)

Elucidating marine microbiota diversity and dynamics holds significant importance due to their role in maintaining vital ecosystem functions and services including climate regulation. This work aims to contribute in the understanding of microbial ecology and networking in one of the world's most understudied marine regions, the Eastern Mediterranean Sea. High-throughput 16S and 18S rRNA gene sequencing analysis was applied to study the diversity of bacteria and unicellular eukaryotes in the different water masses of the Cretan Passage during two seasonally-different sampling expeditions. We assumed that microbial associations differ between the surface and deepwater masses and created co-occurrence networks to evaluate this hypothesis. Our results unveiled vertical variations in both bacterial and unicellular eukaryotic diversity with species fluctuations indicative of seasonality being recorded in the surface water mass. Heterotrophic taxa and grazers related to organic matter degradation and nutrient cycling were enriched in the deepest water layers. Moreover, surface waters presented a higher number of microbial associations indicating abundant ecological niches compared to the deepest layer, possibly related to the lack of bottom-up resources in the oligotrophic deep ocean. Overall, our data provide insight in a heavily stressed, yet underexplored, marine area that requires further research to unravel the ecological roles of marine microbes. To our knowledge, this is the first study that combines molecular biology tools to provide data on both planktic prokaryotes and unicellular eukaryotes across the different water masses in this marine region of the Eastern Mediterranean basin.

UV-Vis spectrophotometric determination of rare earth elements (REE) speciation at near-neutral to alkaline pH. Part I: m-cresol purple properties from 25-75 °C and Er hydrolysis

The speciation and mobility of rare earth elements (REE) strongly depends on pH, which controls the formation of charged aqueous hydroxyl species. The latter potentially play an important role in controlling heavy REE adsorption on clay minerals in near-neutral to alkaline waters such as in regolith-hosted REE mineral deposits. However, accurate REE hydrolysis constants are needed for developing geochemical models that can predict the role of these charged species in natural systems. Here, we develop a robust experimental UV-Vis spectrophotometric method using m-cresol purple to determine in situ pH from 25 to 75 °C. This method is used to derive the average ligand number and hydrolysis constants of erbium (Er) at 25 °C in aqueous solutions with low ionic strength (≤0.001 mol L-1) at pH from ∼7 to 9.5 and in the presence of Er concentrations from 0 to 0.057 mM. The average ligand number ranges between 1 and 3 indicating that Er(OH)2+, Er(OH)2+ and Er(OH)03 control speciation in the experiments. The logarithm of the Er hydrolysis constants (, n = 1 to 3) derived at infinite dilution for the reaction Er3+ + nH2O = Er(OH)n3-n + nH+ are: , , . Implementation of these experimental data into a geochemical model indicates that the Er(OH)2+ and Er(OH)03 species are both stable in a much wider pH range than previously predicted. Consequently, the positively charged REE hydroxyl complexes can potentially control the fractionation of light vs. heavy REE via adsorption as observed in the formation of certain regolith-hosted REE deposits.

Functional diversity of macrozoobenthos under adverse oxygen conditions in the southern Baltic Sea

Oxygen deficiency is a major problem in the Baltic Sea. To study the impact of hypoxia on the functional diversity of benthic fauna and the possibility of macrozoobenthos recovery, data were analyzed in a gradient of oxygen conditions in the Gdańsk Basin. The research conducted on the basis of biological traits analysis enabled us to analyze the number, type and spatial distribution of biological traits-a proxy for functions performed by macrozoobenthos. A significant depletion of macrofauna was already observed under conditions of reduced oxygen above the bottom, both in terms of functional diversity and biomass. Although taxa observed in hypoxia (DO < 2 mL L-1) perform a number of functions, the remaining species do not form complex structures in the sediments or cause deep bioturbation and bioirrigation. Moreover, their extremely low biomass plays an irrelevant role in benthic-pelagic coupling. Thus, benthic fauna under hypoxia is not an element that ensures the functioning of the ecosystem. We assess that traits important for species dispersal and the presence of taxa resistant to short-term hypoxia in the oxic zone above the halocline provide a "backup" for ecosystem functioning under altered diverse oxygen conditions below the halocline after cessation of hypoxia in the southern Baltic Sea.

Diversity under a magnifier lens: the case of Typhlotanaidae (Crustacea: Tanaidacea) in the N Atlantic

Research focusing on 'stout-bodied' typhlotanaids collected from several sites around Iceland and adjacent N Atlantic region has resulted in the description of 15 species new to science, as well as the creation of eight new genera. Typhlotanais eximius Hansen, 1913 is redescribed and transferred to a new genus, while Typhlotanais crassus and Peraeospinosus adipatus are transferred to the genus Larsenotanais. The morphological and the molecular data were combined to consolidate and confirm the validity of the results obtained from both approaches. The polyphyletic nature of the Typhlotanaidae and its serious of its taxonomic diversity are emphasized, although molecular analysis reveals that the 'stout-bodied' Typhlotanaidae form monophyletic clade. Depth and temperature are identified as the main environmental parameters determining the distribution of this group of Typhlotanaidae. Several species are clearly associated with the shelf and upper bathyal of Iceland. The Greenland-Iceland-Faroe Ridge is shown to be a distinct zoogeographical barrier for typhlotanaids inhabiting the deeper slope and abyssal regions around Iceland.

Field measurements reveal exposure risk to microplastic ingestion by filter-feeding megafauna

Microparticles, such as microplastics and microfibers, are ubiquitous in marine food webs. Filter-feeding megafauna may be at extreme risk of exposure to microplastics, but neither the amount nor pathway of microplastic ingestion are well understood. Here, we combine depth-integrated microplastic data from the California Current Ecosystem with high-resolution foraging measurements from 191 tag deployments on blue, fin, and humpback whales to quantify plastic ingestion rates and routes of exposure. We find that baleen whales predominantly feed at depths of 50-250 m, coinciding with the highest measured microplastic concentrations in the pelagic ecosystem. Nearly all (99%) microplastic ingestion is predicted to occur via trophic transfer. We predict that fish-feeding whales are less exposed to microplastic ingestion than krill-feeding whales. Per day, a krill-obligate blue whale may ingest 10 million pieces of microplastic, while a fish-feeding humpback whale likely ingests 200,000 pieces of microplastic. For species struggling to recover from historical whaling alongside other anthropogenic pressures, our findings suggest that the cumulative impacts of multiple stressors require further attention.

Spatiotemporal Variation of Microbial Communities in the Ultra-Oligotrophic Eastern Mediterranean Sea

Marine microbial communities vary seasonally and spatially, but these two factors are rarely addressed together. In this study, the temporal and spatial patterns of the bacterial and archaeal community were studied along a coast-to-offshore transect in the Eastern Mediterranean Sea (EMS) over six cruises, in three seasons of 2 consecutive years. Amplicon sequencing of 16S rRNA genes and transcripts was performed to determine presence and activity, respectively. The ultra-oligotrophic status of the Southeastern Mediterranean Sea was reflected in the microbial community composition dominated by oligotrophic bacterial groups such as SAR11, even at the most coastal station sampled, throughout the year. Seasons significantly affected the microbial communities, explaining more than half of the observed variability. However, the same few taxa dominated the community over the 2-year sampling period, varying only in their degree of dominance. While there was no overall effect of station location on the microbial community, the most coastal site (16 km offshore) differed significantly in community structure and activity from the three further offshore stations in early winter and summer. Our data on the microbial community compositions and their seasonality support previous notions that the EMS behaves like an oceanic gyre.

Phytoplankton exudates provide full nutrition to a subset of accompanying heterotrophic bacteria via carbon, nitrogen and phosphorus allocation

Marine bacteria rely on phytoplankton exudates as carbon sources (DOCp). Yet, it is unclear to what extent phytoplankton exudates also provide nutrients such as phytoplankton-derived N and P (DONp, DOPp). We address these questions by mesocosm exudate addition experiments with spent media from the ubiquitous pico-cyanobacterium Prochlorococcus to bacterial communities in contrasting ecosystems in the Eastern Mediterranean - a coastal and an open-ocean, oligotrophic station with and without on-top additions of inorganic nutrients. Inorganic nutrient addition did not lower the incorporation of exudate DONp, nor did it reduce alkaline phosphatase activity, suggesting that bacterial communities are able to exclusively cover their nitrogen and phosphorus demands with organic forms provided by phytoplankton exudates. Approximately half of the cells in each ecosystem took up detectable amounts of Prochlorococcus-derived C and N, yet based on 16S rRNA sequencing different bacterial genera were responsible for the observed exudate utilization patterns. In the coastal community, several phylotypes of Aureimarina, Psychrosphaera and Glaciecola responded positively to the addition of phytoplankton exudates, whereas phylotypes of Pseudoalteromonas increased and dominated the open-ocean communities. Together, our results strongly indicate that phytoplankton exudates provide coastal and open-ocean bacterial communities with organic carbon, nitrogen and phosphorus, and that phytoplankton exudate serve a full-fledged meal for the accompanying bacterial community in the nutrient-poor eastern Mediterranean. This article is protected by copyright. All rights reserved.

Novel attempt at discrimination of a bullet-shaped siphonophore (Family Diphyidae) using matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-ToF MS)

One major difficulty in identifying the gelatinous bodied bullet-shaped Siphonophore, Diphyids, is that their shape is deformed following ethanol fixation. Ethanol often is preferred over other fixatives, since samples fixed in ethanol can be used for molecular studies that can supplement morphological findings. To overcome this problem, we obtained protein mass spectra of ten species of Diphyidae found in the waters of the Kuroshio Current (Northwest Pacific and South Coast of South Korea) to test whether MALDI-ToF MS could be used as a methodology for species identification. In addition, a number of morphological characteristics that can be used with ethanol-treated samples was summarized. Concatenated phylogenetic analysis was also performed to determine the phylogenetic relationship by obtaining partial sequences of four genes (mtCOI, 16S rRNA, 18S rRNA, and ITS regions). Based on our integrative analysis, MALDI-ToF MS was evaluated as a potentially fast, inexpensive, and accurate tool for species identification along with conventional morphological and DNA barcoding for Diphyidae.

Fine-scale structures as spots of increased fish concentration in the open ocean

Oceanic frontal zones have been shown to deeply influence the distribution of primary producers and, at the other extreme of the trophic web, top predators. However, the relationship between these structures and intermediate trophic levels is much more obscure. In this paper we address this knowledge gap by comparing acoustic measurements of mesopelagic fish concentrations to satellite-derived fine-scale Lagrangian Coherent Structures in the Indian sector of the Southern Ocean. First, we demonstrate that higher fish concentrations occur more frequently in correspondence with strong Lagrangian Coherent Structures. Secondly, we illustrate that, while increased fish densities are more likely to be observed over these structures, the presence of a fine-scale feature does not imply a concomitant fish accumulation, as other factors affect fish distribution. Thirdly, we show that, when only chlorophyll-rich waters are considered, front intensity modulates significantly more the local fish concentration. Finally, we discuss a model representing fish movement along Lagrangian features, specifically built for mid-trophic levels. Its results, obtained with realistic parameters, are qualitatively consistent with the observations and the spatio-temporal scales analysed. Overall, these findings may help to integrate intermediate trophic levels in trophic models, which can ultimately support management and conservation policies.

Metabolomic fingerprinting of Brazilian marine sponges: a case study of Plakinidae species from Fernando de Noronha Archipelago

Marine sponges from the Plakinidae family are well known for hosting cytotoxic secondary metabolites and the Brazilian Atlantic coast and its oceanic islands have been considered as a hotspot for the discovery of new Plakinidae species. Herein, we report the chemical profile among cytotoxic extracts obtained from four species of Plakinidae, collected in Fernando de Noronha Archipelago (PE, Northeastern Brazil). Crude organic extracts of Plakinastrella microspiculifera, Plakortis angulospiculatus, Plakortis insularis, and Plakortis petrupaulensis showed strong antiproliferative effects against two different cancer cell lines (HCT-116: 86.7-100%; MCF-7: 74.9-89.5%) at 50 μg/mL, by the MTT assay. However, at a lower concentration (5 μg/mL), high variability in inhibition of cell growth was observed (HCT-116: 17.3-68.7%; MCF-7: 0.00-55.5%), even within two samples of Plakortis insularis which were collected in the west and east sides of the Archipelago. To discriminate the chemical profile, the samples were investigated by UHPLC-HRMS under positive ionization mode. The produced data was uploaded to the Global Natural Products Social Molecular Networking and organized based on spectral similarities for purposes of comparison and annotation. Compounds such as dipeptides, nucleosides and derivatives, polyketides, and thiazine alkaloids were annotated and metabolomic differences were perceived among the species. To the best of our knowledge, this is the first assessment for cytotoxic activity and chemical profiling for Plakinastrella microspiculifera, Plakortis insularis and Plakortis petrupaulensis, revealing other biotechnologically relevant members of the Plakinidae family.

The organic output from mechanical-biological treatment plants as a source of microplastics: Mini-review on current knowledge, research methodology and future study perspectives

Plastic pollution is one of the biggest environmental problems facing the world. In recent years, microplastics, polymer particles from 1 µm to 5 mm, have been getting much attention. The presence of microplastics has already been confirmed in aquatic and marine ecosystems, soil, atmosphere, biota, and others. The organic output from mechanical-biological treatment (MBT) plants was added to the list of microplastics sources only recently. However, according to preliminary estimates, it may be the second-largest source of microplastics. This article presents an overview of already published investigations on this microplastics source and explains the supposed pathway of microplastics in the MBT plants. The main waste treatment processes that can affect the amount of microplastics in the organic output have been identified as shredding, sieving and, to a lesser extent, aerobic or anaerobic processing. This mini-review also includes methods used in the scientific literature for microplastics extraction, purification, and identification in organic-rich samples, their advantages and limitations. Particular attention is paid to the methods of identifying the small microplastics, less than 1 mm, since the methods for particles 1-5 mm have been more extensively studied. Furthermore, future research needs are highlighted.

Dust-borne microbes affect Ulva ohnoi's growth and physiological state

The marine macroalgae Ulva sp. is considered an ecosystem engineer in rocky shores of temperate waters worldwide. Ulva sp. harbors a rich diversity of associated microbial epibionts, which are known to affect the algae's typical morphological development and 'health'. We examined the interaction between airborne microbes derived from atmospheric aerosols and Ulva ohnoi growth and physiological state. Specifically, we measured U. ohnoi growth rates and photosynthetic efficiency (Fv/Fm), alongside its microbial epibionts abundance, activity and diversity following dust (containing nutrients and airborne microorganisms) or UV-treated dust (only nutrients) amendments to filtered seawater. Parallel incubations with epibionts-free U. ohnoi (treated with antibiotics that removed the algae epibionts) were also tested to specifically examine if dust-borne microbes can replenish the epibiont community of U. ohnoi. We show that viable airborne microbes can restore U. ohnoi natural microbial epibionts communities, thereby keeping the seaweed alive and 'healthy'. These results suggest that microbes delivered through atmospheric aerosols can affect epiphyte biodiversity in marine flora, especially in areas subjected to high annual atmospheric dust deposition such as the Mediterranean Sea.

Limits to the cellular control of sequestered cryptophyte prey in the marine ciliate Mesodinium rubrum

The marine ciliate Mesodinium rubrum is famous for its ability to acquire and exploit chloroplasts and other cell organelles from some cryptophyte algal species. We sequenced genomes and transcriptomes of free-swimming Teleaulax amphioxeia, as well as well-fed and starved M. rubrum in order to understand cellular processes upon sequestration under different prey and light conditions. From its prey, the ciliate acquires the ability to photosynthesize as well as the potential to metabolize several essential compounds including lysine, glycan, and vitamins that elucidate its specific prey dependency. M. rubrum does not express photosynthesis-related genes itself, but elicits considerable transcriptional control of the acquired cryptophyte organelles. This control is limited as light-dependent transcriptional changes found in free-swimming T. amphioxeia got lost after sequestration. We found strong transcriptional rewiring of the cryptophyte nucleus upon sequestration, where 35% of the T. amphioxeia genes were significantly differentially expressed within well-fed M. rubrum. Qualitatively, 68% of all genes expressed within well-fed M. rubrum originated from T. amphioxeia. Quantitatively, these genes contributed up to 48% to the global transcriptome in well-fed M. rubrum and down to 11% in starved M. rubrum. This tertiary endosymbiosis system functions for several weeks, when deprived of prey. After this point in time, the ciliate dies if not supplied with fresh prey cells. M. rubrum represents one evolutionary way of acquiring photosystems from its algal prey, and might represent a step on the evolutionary way towards a permanent tertiary endosymbiosis.

Potentially bioavailable iron produced through benthic cycling in glaciated Arctic fjords of Svalbard

The Arctic has the highest warming rates on Earth. Glaciated fjord ecosystems, which are hotspots of carbon cycling and burial, are extremely sensitive to this warming. Glaciers are important for the transport of iron from land to sea and supply this essential nutrient to phytoplankton in high-latitude marine ecosystems. However, up to 95% of the glacially-sourced iron settles to sediments close to the glacial source. Our data show that while 0.6-12% of the total glacially-sourced iron is potentially bioavailable, biogeochemical cycling in Arctic fjord sediments converts the glacially-derived iron into more labile phases, generating up to a 9-fold increase in the amount of potentially bioavailable iron. Arctic fjord sediments are thus an important source of potentially bioavailable iron. However, our data suggests that as glaciers retreat onto land the flux of iron to the sediment-water interface may be reduced. Glacial retreat therefore likely impacts iron cycling in coastal marine ecosystems.

Drivers of realized satellite tracking duration in marine turtles

BACKGROUND

Satellite tags have revolutionized our understanding of marine animal movements. However, tags may stop transmitting for many reasons and little research has rigorously examined tag failure. Using a long-term, large-scale, multi-species dataset, we evaluated factors influencing tracking duration of satellite tags to inform study design for future tracking studies.

METHODS

We leveraged data on battery status transmitted with location data, recapture events, and number of transmission days to probabilistically quantify multiple potential causes of failure (i.e., battery failure, premature detachment, and tag damage/fouling). We used a combination of logistic regressions and an ordinary linear model including several predictor variables (i.e., tag type, battery life, species, sex, size, and foraging region).

RESULTS

We examined subsets of data from 360 satellite tags encompassing 86,889 tracking days deployed on four species of marine turtles throughout the Gulf of Mexico, Caribbean, and Bahamas from 2008 to 2019. Only 4.1% of batteries died before failure due to other causes. We observed species-specific variation in how long tags remain attached: hawksbills retained 50% of their tags for 1649 days (95% CI 995-1800), loggerheads for 584 days (95% CI 400-690), and green turtles for 294 days (95% CI 198-450). Estimated tracking duration varied by foraging region (Caribbean: 385 days; Bahamas: 356; southern Gulf of Mexico [SGOM]: 276, northern Gulf of Mexico [NGOM]: 177). Additionally, we documented species-specific variation in estimated tracking duration among foraging regions. Based on sensor data, within the Gulf of Mexico, across species, we estimated that 50% of tags began to foul after 83 95% CI (70-120) days.

CONCLUSIONS

The main factor that limited tracking duration was tag damage (i.e., fouling and/or antenna breakage). Turtles that spent most of their time in the Gulf of Mexico had shorter tracking durations than those in the Bahamas and Caribbean, with shortest durations observed in the NGOM. Additionally, tracking duration varied by species, likely as a result of behaviors that damage tags. This information will help researchers, tag companies, permitting agencies, and funders better predict expected tracking durations, improving study designs for imperiled marine turtles. Our results highlight the heterogeneity in telemetry device longevity, and we provide a framework for researchers to evaluate telemetry devices with respect to their study objectives.

Prokaryotic Diversity and Distribution Along Physical and Nutrient Gradients in the Tunisian Coastal Waters (South Mediterranean Sea)

Prokaryotes play an important role in biogeochemical cycling in marine ecosystems, but little is known about their diversity and composition, and how they may contribute to the ecological functioning of coastal areas in the South Mediterranean Sea. This study investigated bacterial and archaeal community diversity in seawater samples along the Tunisian coast subject to important physicochemical disturbances. The 16S amplicon sequencing survey revealed higher prokaryotic diversity in the northern Tunisian bays than in southeastern waters (Gulf of Gabès). The major taxonomic groups identified in all samples were Alphaproteobacteria (40.9%), Gammaproteobacteria (18.7%), Marine Group II Euryarchaeota (11.3%), and Cyanobacteria (10.9%). Among them, the relative abundance of Alteromonadales, Prochlorococcus, and some clades of Pelagibacterales (SAR11) significantly differed between the northern and the southern bays, whereas no difference was observed across coastal waters in the archaeal Candidatus Poseidoniales (MGII), Synechococcus, and Pelagibacteraceae (SAR11 clade Ia), for which no relationship was observed with the environmental variables. Both Pseudoalteromonas and Alteromonas levels increased with the increasing salinity, density and nutrients (NH₄ ⁺ and/or PO₄ ^3-) gradients detected toward the southern waters, while the SAR11 clades Ib and IV and Prochlorococcus, decreased in the shallow, salty and nutrient-rich coastal waters of the Gulf of Gabès. Rhodobacteraceae was positively correlated with Synechococcus and chlorophyll levels, suggesting a relationship with phytoplankton biomass. The present study provides the first insights into planktonic prokaryotic community composition in the South Mediterranean Sea through the analysis of Tunisian seawaters, which may support further investigations on the role of bacterioplankton in the biogeochemistry of these ecosystems.

Over 90 endangered fish and invertebrates are caught in industrial fisheries

Industrial-scale harvest of species at risk of extinction is controversial and usually highly regulated on land and for charismatic marine animals (e.g. whales). In contrast, threatened marine fish species can be legally caught in industrial fisheries. To determine the magnitude and extent of this problem, we analyze global fisheries catch and import data and find reported catch records of 91 globally threatened species. Thirteen of the species are traded internationally and predominantly consumed in European nations. Targeted industrial fishing for 73 of the threatened species accounts for nearly all (99%) of the threatened species catch volume and value. Our results are a conservative estimate of threatened species catch and trade because we only consider species-level data, excluding group records such as 'sharks and rays.' Given the development of new fisheries monitoring technologies and the current push for stronger international mechanisms for biodiversity management, industrial fishing of threatened fish and invertebrates should no longer be neglected in conservation and sustainability commitments.

Ocean warming is the key filter for successful colonization of the migrant octocoral Melithaea erythraea (Ehrenberg, 1834) in the Eastern Mediterranean Sea

Climate, which sets broad limits for migrating species, is considered a key filter to species migration between contrasting marine environments. The Southeast Mediterranean Sea (SEMS) is one of the regions where ocean temperatures are rising the fastest under recent climate change. Also, it is the most vulnerable marine region to species introductions. Here, we explore the factors which enabled the colonization of the endemic Red Sea octocoral Melithaea erythraea (Ehrenberg, 1834) along the SEMS coast, using sclerite oxygen and carbon stable isotope composition (δ ¹⁸O_SC and δ ¹³C_SC), morphology, and crystallography. The unique conditions presented by the SEMS include a greater temperature range (∼15 °C) and ultra-oligotrophy, and these are reflected by the lower δ ¹³C_SCvalues. This is indicative of a larger metabolic carbon intake during calcification, as well as an increase in crystal size, a decrease of octocoral wart density and thickness of the migrating octocoral sclerites compared to the Red Sea samples. This suggests increased stress conditions, affecting sclerite deposition of the SEMS migrating octocoral. The δ ¹⁸Osc range of the migrating M. erythraea indicates a preference for warm water sclerite deposition, similar to the native depositional temperature range of 21-28 °C. These findings are associated with the observed increase of minimum temperatures in winter for this region, at a rate of 0.35 ± 0.27 °C decade^-1 over the last 30 years, and thus the region is becoming more hospitable to the Indo-Pacific M. erythraea. This study shows a clear case study of "tropicalization" of the Mediterranean Sea due to recent warming.

Speciation and risk assessment of selected trace metals in bottom sediment of coral reef ecosystems of the Persian Gulf

To evaluate the hazard assessment of anthropogenic activities on coastal ecosystems, fractionation and bioaccumulation of trace metals were carried out for sediment and coral samples of three distinct habitats including petroleum exploration area of Kharg, the rural harbor of Chirouyeh, and unpopulated area of Hendorabi. Fractionation results suggested that Ni (~ 51%), Pb (~ 49%), and V (~ 45%) in Kharg; Ni (~ 46%), Pb (~ 84%), and Zn (~ 47%) in Chirouyeh; and Cd (~ 51%) in Hendorabi were the predominant metals in the non-resistant fractions of the sediment samples. Risk Assessment Code (RAC), individual contamination factor (ICF), and global contamination factor (GCF) were derived. The highest relative risk for Cd, Cu, and Ti was observed in Kharg, whereas the highest relative risk for Ni, Pb, V, and Zn was recorded in Chirouyeh. The lowest risk for almost all of the trace metals was observed in Hendorabi. Biota-sediment accumulation factor (BSAF) values of coral samples revealed that species examined in the present study are reliable biomonitors for Cd, Ni, Pb, and Zn contamination. Principal component analysis (PCA) and Pearson's correlation coefficient (PCC) suggested that Pb, Ni, and Zn can be considered the main pollutants of the Persian Gulf which originated mainly from petroleum industries. Furthermore, the metal uptake rates of coral samples seemed to be dependent on bioabsorption pathways and coral species. Overall, the present work constitutes a good basis for further studies on trace metal fractionation, risk assessment, and source apportionment in the Persian Gulf, which could contribute to more effective decisions for reducing the anthropogenic trace metal pollution.

Bio-Aerosols Negatively Affect Prochlorococcus in Oligotrophic Aerosol-Rich Marine Regions

The marine cyanobacterium Prochlorococcus is a dominant photoautotroph in many oligotrophic Low-Nutrients-Low-Chlorophyll (LNLC) regions. While the chemical impact of aerosols upon interaction with surface seawater was documented in numerous studies, we show that Prochlorococcus cells are affected also by bio-aerosols (potentially biological agents in the dust/aerosols such as membrane-bound extracellular vesicles, small-size bacteria and/or viruses), resulting in lower surface seawater abundances in the oligotrophic Mediterranean Sea. We conducted experimental amendments of ‘live’ aerosol/dust particles and aerosol filtrates (<0.22-µm) to surface Southeastern Mediterranean seawater or to pure Prochlorococcus cultures (MED4). Results show a significant decline in cell biomass (<90%), while UV-sterilized aerosols elicited a much weaker and non-significant response (~10%). We suggest that the difference is due to a negative effect of bio-aerosols specific to Prochlorococcus. Accordingly, the dominance of Synechococcus over Prochlorococcus throughout the surface Mediterranean Sea (observed mainly in spring when atmospheric aerosol levels are relatively high) and the lack of spatial westward gradient in Prochlorococcus biomass as typically observed for chlorophyll-a or other cyanobacteria may be attributed, at least to some extent, to the impact of bio-aerosol deposition across the basin. Predictions for enhanced desertification and increased dust emissions may intensify the transport and potential impact of bio-aerosols in LNLC marine systems.

Faster Atlantic currents drive poleward expansion of temperate phytoplankton in the Arctic Ocean

The Arctic marine biome, shrinking with increasing temperature and receding sea-ice cover, is tightly connected to lower latitudes through the North Atlantic. By flowing northward through the European Arctic Corridor (the main Arctic gateway where 80% of in- and outflow takes place), the North Atlantic Waters transport most of the ocean heat, but also nutrients and planktonic organisms toward the Arctic Ocean. Using satellite-derived altimetry observations, we reveal an increase, up to two-fold, in North Atlantic current surface velocities over the last 24 years. More importantly, we show evidence that the North Atlantic current and its variability shape the spatial distribution of the coccolithophore Emiliania huxleyi (Ehux), a tracer for temperate ecosystems. We further demonstrate that bio-advection, rather than water temperature as previously assumed, is a major mechanism responsible for the recent poleward intrusions of southern species like Ehux. Our findings confirm the biological and physical “Atlantification” of the Arctic Ocean with potential alterations of the Arctic marine food web and biogeochemical cycles.

The North Atlantic current has been suspected to trigger intrusions of temperate marine species in the Arctic. Here, Oziel and colleagues reveal the link between the poleward intrusion of the temperate coccolithophore Emiliania huxleyi and the North Atlantic current, showing evidence for bio-advection as an important mechanism.

Arrested fungal biofilms as low-modulus structural bio-composites: Water holds the key

Biofilms are self-assembling structures consisting of rigid microbial cells embedded in a soft biopolymeric extracellular matrix (ECM), and have been commonly viewed as being detrimental to health and equipment. In this work, we show that biofilms formed by a non-pathogenic fungus Neurospora discreta, are fungal bio-composites (FBCs) that can be directed to self-organize through active stresses to achieve specific properties. We induced active stresses by systematically varying the agitation rate during the growth of FBCs. By growing FBCs that are strong enough to be conventionally tensile loaded, we find that as agitation rate increases, the elongation strain at which the FBCs break, increases linearly, and their elastic modulus correspondingly decreases. Using results from microstructural imaging and thermogravimetry, we rationalize that agitation increases the production of ECM, which concomitantly increases the water content of agitated FBCs up to 250% more than un-agitated FBCs. Water held in the nanopores of the ECM acts a plasticizer and controls the ductility of FBCs in close analogy with polyelectrolyte complexes. This paradigm shift in viewing biofilms as bio-composites opens up the possibility for their use as sustainable, biodegradable, low-modulus structural materials.

Ex situ co culturing of the sea urchin, Mespilia globulus and the coral Acropora millepora enhances early post-settlement survivorship

Reef restoration efforts, utilising sexual coral propagation need up-scaling to have ecologically meaningful impact. Post-settlement survival bottlenecks, in part due to competitive benthic algae interactions should be addressed, to improve productivity for these initiatives. Sea urchins are keystone grazers in reef ecosystems, yet feeding behaviour of adults causes physical damage and mortality to developing coral spat. To investigate if microherbivory can be utilised for co-culture, we quantitatively assessed how varying densities of juvenile sea urchins Mespilia globulus (Linnaeus, 1758), reared alongside the coral Acropora millepora (Ehrenberg, 1834) effected survival and growth of coral recruits. Spawning of both species were induced ex situ. A comparison of A. millepora spat reared in three M. globulus densities (low 16.67 m⁻², medium 37.50 m⁻², high 75.00 m⁻²) and a non-grazed control indicated coral survival is significantly influenced by grazing activity (p < 0.001) and was highest in the highest density treatment (39.65 ± 10.88%, mean ± s.d). Urchin grazing also significantly (p < 0.001) influenced coral size (compared to non-grazing control), with colonies in the medium and high-densities growing the largest (21.13 ± 1.02 mm & 20.80 ± 0.82, mean ± s.e.m). Increased urchin density did however have a negative influence on urchin growth, a result of limited food availability.

DOP Stimulates Heterotrophic Bacterial Production in the Oligotrophic Southeastern Mediterranean Coastal Waters

Phytoplankton and heterotrophic bacteria rely on a suite of inorganic and organic macronutrients to satisfy their cellular needs. Here, we explored the effect of dissolved inorganic phosphate (PO₄) and several dissolved organic molecules containing phosphorus [ATP, glucose-6-phosphate, 2-aminoethylphosphonic acid, collectively referred to as dissolved organic phosphorus (DOP)], on the activity and biomass of autotrophic and heterotrophic microbial populations in the coastal water of the southeastern Mediterranean Sea (SEMS) during summertime. To this end, surface waters were supplemented with PO₄, one of the different organic molecules, or PO₄ + ATP, and measured the PO₄ turnover time (Tt), alkaline phosphatase activity (APA), heterotrophic bacterial production (BP), primary production (PP), and the abundance of the different microbial components. Our results show that PO₄ alone does not stimulate any significant change in most of the autotrophic or heterotrophic bacterial variables tested. ATP addition (alone or with PO₄) triggers the strongest increase in primary and bacterial productivity or biomass. Heterotrophic bacterial abundance and BP respond faster than phytoplankton (24 h post addition) to the various additions of DOP or PO₄ + ATP, followed by a recovery of primary productivity (48 h post addition). These observations suggest that both autotrophic and heterotrophic microbial communities compete for labile organic molecules containing P, such as ATP, to satisfy their cellular needs. It also suggests that SEMS coastal water heterotrophic bacteria are likely C and P co-limited.

Histological evaluation of five suture materials in the telson ligament of the American horseshoe crab (Limulus polyphemus)

An ideal suture material supports healing, minimizes inflammation, and decreases the likelihood of secondary infection. While there are published recommendations for suture materials in some invertebrates, there are no published recommendations for Limulus polyphemus or any chelicerate. This study evaluates the histological reaction of horseshoe crabs to five commonly used suture materials: monofilament nylon, silk, poliglecaprone, polydioxanone, and polyglycolic acid. None of the materials were superior with regards to holding nor was there any dehiscence. Nylon evoked the least amount of tissue reaction. This work also provides a histopathological description of the soft membrane at the hinge area between the opisthosoma and telson (telson ligament) and comments on euthanasia with intracardiac eugenol.

Direct Detection of Heterotrophic Diazotrophs Associated with Planktonic Aggregates

N₂ fixation by planktonic heterotrophic diazotrophs is more wide spread than previously thought, including environments considered “unfavorable” for diazotrophy. These environments include a substantial fraction of the aquatic biosphere such as eutrophic estuaries with high ambient nitrogen concentrations and oxidized aphotic water. Different studies suggested that heterotrophic diazotrophs associated with aggregates may promote N₂ fixation in such environments. However, this association was never validated directly and relies mainly on indirect relationships and different statistical approaches. Here, we identified, for the first time, a direct link between active heterotrophic diazotrophs and aggregates that comprise polysaccharides. Our new staining method combines fluorescent tagging of active diazotrophs by nitrogenase-immunolabeling, polysaccharides staining by Alcian blue or concanavalin-A, and total bacteria via nucleic-acid staining. Concomitant to N₂ fixation rates and bacterial activity, this new method provided specific localization of heterotrophic diazotrophs on artificial and natural aggregates. We postulate that the insights gained by this new visualization approach will have a broad significance for future research on the aquatic nitrogen cycle, including environments in which diazotrophy has traditionally been overlooked.

Differential coral response to algae contact: Porites tissue loss, praise for Halimeda interaction at southeast coast of India

Worldwide, reef building corals are being degraded due to increasing anthropogenic pressure, and as a result, macroalgal cover is being increased. Hence, mechanism of coral-algal interaction, differential coral response to algal overgrowth, is critical from every geographical location to predict future coral dynamics. This paper documents the frequency of coral-algal (Halimeda) interactions, differential coral response to algal interaction. We found difference in susceptibility among coral genera to competitive effects. Out of 970 coral colonies surveyed, 36.7% were in contact with Halimeda sp. Most frequent contact was observed in Porites (57%) followed by Favites 28% (n = 60), Acropora 26% (n = 48), Platygyra 5% (n = 5) and Symphyllia 4.2% (n = 3). Frequent discoloration and tissue loss were only observed in Porites. Continuous monitoring revealed that long-term algal physical contact prevents light required for polyp for photosynthesis and stops coral feeding ability. In this study, we also found mutual exclusion between Halimeda and coral recruit. Out of 180 coral colonies (size class between 5 and 15 cm) comprised of Favites (n = 74), Acropora (n = 20), Favia (n = 79) and Porites (n = 7) surveyed, none of them were found in Halimeda-dominated sites. The documented effects of recruitment exclusion and tissue mortality followed by algal interaction on major reef building corals (Porites) could affect replenishing process and health of the remaining healthy corals in the Palk Bay reef if algal proliferation rate is not controlled through proper management strategies.

Unique quantitative Symbiodiniaceae signature of coral colonies revealed through spatio-temporal survey in Moorea

One of the mechanisms of rapid adaptation or acclimatization to environmental changes in corals is through the dynamics of the composition of their associated endosymbiotic Symbiodiniaceae community. The various species of these dinoflagellates are characterized by different biological properties, some of which can confer stress tolerance to the coral host. Compelling evidence indicates that the corals’ Symbiodiniaceae community can change via shuffling and/or switching but the ecological relevance and the governance of these processes remain elusive. Using a qPCR approach to follow the dynamics of Symbiodiniaceae genera in tagged colonies of three coral species over a 10–18 month period, we detected putative genus-level switching of algal symbionts, with coral species-specific rates of occurrence. However, the dynamics of the corals’ Symbiodiniaceae community composition was not driven by environmental parameters. On the contrary, putative shuffling event were observed in two coral species during anomalous seawater temperatures and nutrient concentrations. Most notably, our results reveal that a suit of permanent Symbiodiniaceae genera is maintained in each colony in a specific range of quantities, giving a unique ‘Symbiodiniaceae signature’ to the host. This individual signature, together with sporadic symbiont switching may account for the intra-specific differences in resistance and resilience observed during environmental anomalies.

The Relationship between Air-Mass Trajectories and the Abundance of Dust-Borne Prokaryotes at the SE Mediterranean Sea

Airborne prokaryotes are transported along with dust/aerosols, yet very little attention is given to their temporal variability above the oceans and the factors that govern their abundance. We analyzed the abundance of autotrophic (cyanobacteria) and heterotopic airborne microbes in 34 sampling events between 2015–2018 at a coastal site in the SE Mediterranean Sea. We show that airborne autotrophic (0.2–7.6 cells × 103 m−3) and heterotrophic (0.2–30.6 cells × 103 m−3) abundances were affected by the origin and air mass trajectory, and the concentration of dust/aerosols in the air, while seasonality was not coherent. The averaged ratio between heterotrophic and autotrophic prokaryotes in marine-dominated trajectories was ~1.7 ± 0.6, significantly lower than for terrestrial routes (6.8 ± 6.1). Airborne prokaryotic abundances were linearly and positively correlated to the concentrations of total aerosol, while negatively correlated with the aerosol’s anthropogenic fraction (using Pb/Al or Cu/Al ratios as proxies). While aerosols may play a major role in dispersing terrestrial and marine airborne microbes in the SE Mediterranean Sea, the mechanisms involved in the dispersal and diversity of airborne microorganisms remain to be studied and should include standardization in collection and analysis protocols.

Observing Changes in Ocean Carbonate Chemistry: Our Autonomous Future

PURPOSE OF REVIEW

We summarize recent progress on autonomous observations of ocean carbonate chemistry and the development of a network of sensors capable of observing carbonate processes at multiple temporal and spatial scales.

RECENT FINDINGS

The development of versatile pH sensors suitable for both deployment on autonomous vehicles and in compact, fixed ecosystem observatories has been a major development in the field. The initial large-scale deployment of profiling floats equipped with these new pH sensors in the Southern Ocean has demonstrated the feasibility of a global autonomous open-ocean carbonate observing system.

SUMMARY

Our developing network of autonomous carbonate observations is currently targeted at surface ocean CO₂ fluxes and compact ecosystem observatories. New integration of developed sensors on gliders and surface vehicles will increase our coastal and regional observational capability. Most autonomous platforms observe a single carbonate parameter, which leaves us reliant on the use of empirical relationships to constrain the rest of the carbonate system. Sensors now in development promise the ability to observe multiple carbonate system parameters from a range of vehicles in the near future.

Temporal variability of diazotroph community composition in the upwelling region off NW Iberia

Knowledge of the ecology of N2-fixing (diazotrophic) plankton is mainly limited to oligotrophic (sub)tropical oceans. However, diazotrophs are widely distributed and active throughout the global ocean. Likewise, relatively little is known about the temporal dynamics of diazotrophs in productive areas. Between February 2014 and December 2015, we carried out 9 one-day samplings in the temperate northwestern Iberian upwelling system to investigate the temporal and vertical variability of the diazotrophic community and its relationship with hydrodynamic forcing. In downwelling conditions, characterized by deeper mixed layers and a homogeneous water column, non-cyanobacterial diazotrophs belonging mainly to nifH clusters 1G (Gammaproteobacteria) and 3 (putative anaerobes) dominated the diazotrophic community. In upwelling and relaxation conditions, affected by enhanced vertical stratification and hydrographic variability, the community was more heterogeneous vertically but less diverse, with prevalence of UCYN-A (unicellular cyanobacteria, subcluster 1B) and non-cyanobacterial diazotrophs from clusters 1G and 3. Oligotyping analysis of UCYN-A phylotype showed that UCYN-A2 sublineage was the most abundant (74%), followed by UCYN-A1 (23%) and UCYN-A4 (2%). UCYN-A1 oligotypes exhibited relatively low frequencies during the three hydrographic conditions, whereas UCYN-A2 showed higher abundances during upwelling and relaxation. Our findings show the presence of a diverse and temporally variable diazotrophic community driven by hydrodynamic forcing in an upwelling system.

The effect of biologging systems on reproduction, growth and survival of adult sea turtles

BACKGROUND

Telemetry and biologging systems, 'tracking' hereafter, have been instrumental in meeting the challenges associated with studying the ecology and behaviour of cryptic, wide-ranging marine mega-vertebrates. Over recent decades, globally, sea turtle tracking has increased exponentially, across species and life-stages, despite a paucity of studies investigating the effects of such devices on study animals. Indeed, such studies are key to informing whether data collected are unbiased and, whether derived estimates can be considered typical of the population at large.

METHODS

Here, using a 26-year individual-based monitoring dataset on sympatric green (Chelonia mydas) and loggerhead (Caretta caretta) turtles, we provide the first analysis of the effects of device attachment on reproduction, growth and survival of nesting females.

RESULTS

We found no significant difference in growth and reproductive correlates between tracked and non-tracked females in the years following device attachment. Similarly, when comparing pre- and post-tracking data, we found no significant difference in the reproductive correlates of tracked females for either species or significant carry-over effects of device attachment on reproductive correlates in green turtles. The latter was not investigated for loggerhead turtles due to small sample size. Finally, we found no significant effects of device attachment on return rates or survival of tracked females for either species.

CONCLUSION

While there were no significant detrimental effects of device attachment on adult sea turtles in this region, our study highlights the need for other similar studies elsewhere and the value of long-term individual-based monitoring.

Phytoplankton and Bacterial Response to Desert Dust Deposition in the Coastal Waters of the Southeastern Mediterranean Sea: A Four-Year In Situ Survey

Atmospheric dust/aerosol deposition is an important source of external nutrients for the surface of the ocean. This study shows high-resolution observational data gathered in situ over a period of four years on bacterial and phytoplankton abundance and activity during typical background atmospheric conditions and during intense dust storm events in the low-nutrient, low-chlorophyll (LNLC) coastal waters of the southeastern Mediterranean Sea (SEMS). Chlorophyll a (an estimate for phytoplankton biomass) and bacterial abundance show moderate changes in response to dust deposition/events (−10% and +20%, respectively), while primary production, bacterial production, and N2 fixation rates were all significantly and positively affected by deposition (+25 to +40%; p < 0.05). The rapid changes in bacterial and/or phytoplankton rate parameters suggest that the released micro-/macronutrients from atmospheric deposition are tunneled directly in metabolic processes and, to a lesser extent, for biomass accumulation. The predicted expansion of LNLC areas in oceans in the future, and the projected increase in dust emission due to desertification, may affect the production of marine microbial communities in the surface of the ocean, yet only moderately affect their biomass or standing stock. Such alterations may impact carbon sequestration to the deep ocean.