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Travers-Cook TJ, Jokela J, Buser CC. The evolutionary ecology of fungal killer phenotypes. Proc Biol Sci 2023; 290:20231108. [PMID: 37583325 PMCID: PMC10427833 DOI: 10.1098/rspb.2023.1108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Accepted: 07/20/2023] [Indexed: 08/17/2023] Open
Abstract
Ecological interactions influence evolutionary dynamics by selecting upon fitness variation within species. Antagonistic interactions often promote genetic and species diversity, despite the inherently suppressive effect they can have on the species experiencing them. A central aim of evolutionary ecology is to understand how diversity is maintained in systems experiencing antagonism. In this review, we address how certain single-celled and dimorphic fungi have evolved allelopathic killer phenotypes that engage in antagonistic interactions. We discuss the evolutionary pathways to the production of lethal toxins, the functions of killer phenotypes and the consequences of competition for toxin producers, their competitors and toxin-encoding endosymbionts. Killer phenotypes are powerful models because many appear to have evolved independently, enabling across-phylogeny comparisons of the origins, functions and consequences of allelopathic antagonism. Killer phenotypes can eliminate host competitors and influence evolutionary dynamics, yet the evolutionary ecology of killer phenotypes remains largely unknown. We discuss what is known and what remains to be ascertained about killer phenotype ecology and evolution, while bringing their model system properties to the reader's attention.
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Affiliation(s)
- Thomas J. Travers-Cook
- Institute of Integrative Biology, ETH Zürich, Zürich, Switzerland
- Department of Aquatic Ecology, Eawag, Dübendorf, Switzerland
| | - Jukka Jokela
- Institute of Integrative Biology, ETH Zürich, Zürich, Switzerland
- Department of Aquatic Ecology, Eawag, Dübendorf, Switzerland
| | - Claudia C. Buser
- Institute of Integrative Biology, ETH Zürich, Zürich, Switzerland
- Department of Aquatic Ecology, Eawag, Dübendorf, Switzerland
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Kuchen B, Maturano YP, Gil RM, Vazquez F, Scaglia GJE. Kinetics and mathematical model of killer/sensitive interaction under different physicochemical conditions of must/wine: a study from a biological point of view. Lett Appl Microbiol 2022; 74:718-728. [PMID: 35075656 DOI: 10.1111/lam.13657] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 01/11/2022] [Accepted: 01/13/2022] [Indexed: 11/30/2022]
Abstract
Fermentation of grape must to wine is carried out by a complex microbial mixture, which also involves spoilage yeasts of wine. The latter yeasts produce organoleptic changes that cause significant economic losses to the wine industry. SO2 is traditionally used to control this spoilage populations, but because of its harmful effects on human health, biocontrol has emerged as an alternative treatment. Although studies have been carried out to select biocontroller yeasts and examine their underlying mechanisms of action, reports on their application have not been published yet. To better understand the interaction and the successful application of biocontrol, the use of mathematical models, among other methods, is important, as they facilitate the prediction of success or failure of the antagonist. The objective of the present study was to use an existing mathematical model to obtain information about the yeast's interaction assayed and to validate its predictive use under different physicochemical conditions during the wine fermentation, and eventually predict biocontrol kinetics. The mathematical model was applied to the fermentation conditions and provided information on the kinetic parameters of the biocontrol interaction and allowed interpretations about other parameters. The model was applied in the different physicochemical conditions for the biocontrol and did not fit correctly to experimental data, and therefore an improvement was proposed which was successful and presented new hypotheses.
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Affiliation(s)
- Benjamín Kuchen
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Av. Rivadavia 1917, Ciudad Autónoma de Buenos Aires, C1033AAJ, Argentina.,Instituto de Biotecnología (IBT), Universidad Nacional de San Juan, Av. San Martín 1109 (O), San Juan, 5400, Argentina
| | - Yolanda Paola Maturano
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Av. Rivadavia 1917, Ciudad Autónoma de Buenos Aires, C1033AAJ, Argentina.,Instituto de Biotecnología (IBT), Universidad Nacional de San Juan, Av. San Martín 1109 (O), San Juan, 5400, Argentina
| | - Rocío M Gil
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Av. Rivadavia 1917, Ciudad Autónoma de Buenos Aires, C1033AAJ, Argentina.,Instituto de Biotecnología (IBT), Universidad Nacional de San Juan, Av. San Martín 1109 (O), San Juan, 5400, Argentina
| | - Fabio Vazquez
- Instituto de Biotecnología (IBT), Universidad Nacional de San Juan, Av. San Martín 1109 (O), San Juan, 5400, Argentina
| | - Gustavo J E Scaglia
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Av. Rivadavia 1917, Ciudad Autónoma de Buenos Aires, C1033AAJ, Argentina.,Instituto de Ingeniería Química (IIQ), Universidad Nacional de San Juan, Av. San Martín 1109 (O), San Juan, 5400, Argentina
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Boynton PJ. The ecology of killer yeasts: Interference competition in natural habitats. Yeast 2019; 36:473-485. [PMID: 31050852 DOI: 10.1002/yea.3398] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2019] [Revised: 04/22/2019] [Accepted: 04/23/2019] [Indexed: 12/31/2022] Open
Abstract
Killer yeasts are ubiquitous in the environment: They have been found in diverse habitats ranging from ocean sediment to decaying cacti to insect bodies and on all continents including Antarctica. However, environmental killer yeasts are poorly studied compared with laboratory and domesticated killer yeasts. Killer yeasts secrete so-called killer toxins that inhibit nearby sensitive yeasts, and the toxins are frequently assumed to be tools for interference competition in diverse yeast communities. The diversity and ubiquity of killer yeasts imply that interference competition is crucial for shaping yeast communities. Additionally, these toxins may have ecological functions beyond use in interference competition. This review introduces readers to killer yeasts in environmental systems, with a focus on what is and is not known about their ecology and evolution. It also explores how results from experimental killer systems in laboratories can be extended to understand how competitive strategies shape yeast communities in nature. Overall, killer yeasts are likely to occur everywhere yeasts are found, and the killer phenotype has the potential to radically shape yeast diversity in nature.
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Affiliation(s)
- Primrose J Boynton
- Max-Planck Institute for Evolutionary Biology, Environmental Genomics Group, Plön, Germany
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Mannazzu I, Domizio P, Carboni G, Zara S, Zara G, Comitini F, Budroni M, Ciani M. Yeast killer toxins: from ecological significance to application. Crit Rev Biotechnol 2019; 39:603-617. [PMID: 31023102 DOI: 10.1080/07388551.2019.1601679] [Citation(s) in RCA: 66] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Killer toxins are proteins that are often glycosylated and bind to specific receptors on the surface of their target microorganism, which is then killed through a target-specific mode of action. The killer phenotype is widespread among yeast and about 100 yeast killer species have been described to date. The spectrum of action of the killer toxins they produce targets spoilage and pathogenic microorganisms. Thus, they have potential as natural antimicrobials in food and for biological control of plant pathogens, as well as therapeutic agents against animal and human infections. In spite of this wide range of possible applications, their exploitation on the industrial level is still in its infancy. Here, we initially briefly report on the biodiversity of killer toxins and the ecological significance of their production. Their actual and possible applications in the agro-food industry are discussed, together with recent advances in their heterologous production and the manipulation for development of peptide-based therapeutic agents.
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Affiliation(s)
- Ilaria Mannazzu
- a Department of Agriculture , University of Sassari , Sassari , Italy
| | - Paola Domizio
- b Department of Agricultural , Food and Forestry Systems (GESAAF) , Firenze , Italy
| | - Gavino Carboni
- a Department of Agriculture , University of Sassari , Sassari , Italy
| | - Severino Zara
- a Department of Agriculture , University of Sassari , Sassari , Italy
| | - Giacomo Zara
- a Department of Agriculture , University of Sassari , Sassari , Italy
| | - Francesca Comitini
- c Department of Life and Environmental Sciences , Università Politecnica delle Marche , Ancona , Italy
| | - Marilena Budroni
- a Department of Agriculture , University of Sassari , Sassari , Italy
| | - Maurizio Ciani
- c Department of Life and Environmental Sciences , Università Politecnica delle Marche , Ancona , Italy
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Chemical interaction of endophytic fungi and actinobacteria from Lychnophora ericoides in co-cultures. Microbiol Res 2018; 212-213:10-16. [DOI: 10.1016/j.micres.2018.04.005] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2017] [Revised: 03/16/2018] [Accepted: 04/12/2018] [Indexed: 11/24/2022]
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Affiliation(s)
- Jussi Lehtonen
- Evolution and Ecology Research Centre School of Biological, Earth and Environmental Sciences University of New South Wales Sydney New South Wales 2052 Australia
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Rivero D, Berná L, Stefanini I, Baruffini E, Bergerat A, Csikász-Nagy A, De Filippo C, Cavalieri D. Hsp12p and PAU
genes are involved in ecological interactions between natural yeast strains. Environ Microbiol 2015; 17:3069-81. [DOI: 10.1111/1462-2920.12950] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2015] [Accepted: 06/06/2015] [Indexed: 11/28/2022]
Affiliation(s)
- Damaríz Rivero
- Department of Neurosciences, Psychology, Drug Research and Child Health; University of Florence; Florence Italy
| | - Luisa Berná
- Molecular Biology Unit; Institut Pasteur; Montevideo Uruguay
| | - Irene Stefanini
- Centre for Research and Innovation; Fondazione Edmund Mach; San Michele all'Adige Trento Italy
| | | | - Agnes Bergerat
- Department of Pathology; Boston University School of Medicine; Boston USA
| | - Attila Csikász-Nagy
- Centre for Research and Innovation; Fondazione Edmund Mach; San Michele all'Adige Trento Italy
| | - Carlotta De Filippo
- Centre for Research and Innovation; Fondazione Edmund Mach; San Michele all'Adige Trento Italy
| | - Duccio Cavalieri
- Department of Neurosciences, Psychology, Drug Research and Child Health; University of Florence; Florence Italy
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Comolli LR. Intra- and inter-species interactions in microbial communities. Front Microbiol 2014; 5:629. [PMID: 25505455 PMCID: PMC4241841 DOI: 10.3389/fmicb.2014.00629] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2014] [Accepted: 11/03/2014] [Indexed: 11/13/2022] Open
Affiliation(s)
- Luis R Comolli
- Beamline 4.2.2, Advanced Light Source, ALS-Molecular Biology Consortium Berkeley, CA, USA
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