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Pellegrinetti TA, Cotta SR, Feitosa YB, Melo PLA, Bieluczyk W, Silva AMM, Mendes LW, Sarmento H, Camargo PB, Tsai SM, Fiore MF. The role of microbial communities in biogeochemical cycles and greenhouse gas emissions within tropical soda lakes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 947:174646. [PMID: 38986696 DOI: 10.1016/j.scitotenv.2024.174646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 07/02/2024] [Accepted: 07/07/2024] [Indexed: 07/12/2024]
Abstract
Although anthropogenic activities are the primary drivers of increased greenhouse gas (GHG) emissions, it is crucial to acknowledge that wetlands are a significant source of these gases. Brazil's Pantanal, the largest tropical inland wetland, includes numerous lacustrine systems with freshwater and soda lakes. This study focuses on soda lakes to explore potential biogeochemical cycling and the contribution of biogenic GHG emissions from the water column, particularly methane. Both seasonal variations and the eutrophic status of each examined lake significantly influenced GHG emissions. Eutrophic turbid lakes (ET) showed remarkable methane emissions, likely due to cyanobacterial blooms. The decomposition of cyanobacterial cells, along with the influx of organic carbon through photosynthesis, accelerated the degradation of high organic matter content in the water column by the heterotrophic community. This process released byproducts that were subsequently metabolized in the sediment leading to methane production, more pronounced during periods of increased drought. In contrast, oligotrophic turbid lakes (OT) avoided methane emissions due to high sulfate levels in the water, though they did emit CO2 and N2O. Clear vegetated oligotrophic turbid lakes (CVO) also emitted methane, possibly from organic matter input during plant detritus decomposition, albeit at lower levels than ET. Over the years, a concerning trend has emerged in the Nhecolândia subregion of Brazil's Pantanal, where the prevalence of lakes with cyanobacterial blooms is increasing. This indicates the potential for these areas to become significant GHG emitters in the future. The study highlights the critical role of microbial communities in regulating GHG emissions in soda lakes, emphasizing their broader implications for global GHG inventories. Thus, it advocates for sustained research efforts and conservation initiatives in this environmentally critical habitat.
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Affiliation(s)
- Thierry A Pellegrinetti
- University of São Paulo (USP), Center for Nuclear Energy in Agriculture, Avenida Centenário 303, Piracicaba, São Paulo 13416-000, Brazil.
| | - Simone R Cotta
- University of São Paulo (USP), Center for Nuclear Energy in Agriculture, Avenida Centenário 303, Piracicaba, São Paulo 13416-000, Brazil
| | - Yara B Feitosa
- University of São Paulo (USP), Center for Nuclear Energy in Agriculture, Avenida Centenário 303, Piracicaba, São Paulo 13416-000, Brazil
| | - Paul L A Melo
- University of São Paulo (USP), Center for Nuclear Energy in Agriculture, Avenida Centenário 303, Piracicaba, São Paulo 13416-000, Brazil
| | - Wanderlei Bieluczyk
- University of São Paulo (USP), Center for Nuclear Energy in Agriculture, Avenida Centenário 303, Piracicaba, São Paulo 13416-000, Brazil
| | - Antonio M M Silva
- University of São Paulo (USP), "Luiz de Queiroz" College of Agriculture, Soil Science Department, Piracicaba, São Paulo 13418-900, Brazil
| | - Lucas W Mendes
- University of São Paulo (USP), Center for Nuclear Energy in Agriculture, Avenida Centenário 303, Piracicaba, São Paulo 13416-000, Brazil
| | - Hugo Sarmento
- Federal University of São Carlos (UFSCar), Department of Hydrobiology, São Carlos, São Paulo 13565-905, Brazil
| | - Plinio B Camargo
- University of São Paulo (USP), Center for Nuclear Energy in Agriculture, Avenida Centenário 303, Piracicaba, São Paulo 13416-000, Brazil
| | - Siu M Tsai
- University of São Paulo (USP), Center for Nuclear Energy in Agriculture, Avenida Centenário 303, Piracicaba, São Paulo 13416-000, Brazil
| | - Marli F Fiore
- University of São Paulo (USP), Center for Nuclear Energy in Agriculture, Avenida Centenário 303, Piracicaba, São Paulo 13416-000, Brazil.
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Carvalho CR, Souza BCE, Bieluczyk W, Feitosa YB, Delbaje E, Camargo PB, Tsai SM, Fiore MF. Phosphonate consumers potentially contributing to methane production in Brazilian soda lakes. Extremophiles 2023; 28:4. [PMID: 37987855 DOI: 10.1007/s00792-023-01318-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Accepted: 09/26/2023] [Indexed: 11/22/2023]
Abstract
Oxic methane production (OMP) has been reported to significantly contribute to methane emissions from oxic surface waters. Demethylation of organic compounds, photosynthesis-associated methane production, and (bacterio)chlorophyll reduction activity are some of the investigated mechanisms as potential OMP sources related to photosynthetic organisms. Recently, cyanobacteria have often been correlated with methane accumulation and emission in freshwater, marine, and saline systems. The Brazilian Pantanal is the world's largest wetland system, with approximately 10,000 shallow lakes, most of which are highly alkaline and saline extreme environments. We initiated this study with an overall investigation using genetic markers, from which we explored metagenomic and limnological data from the Pantanal soda for five potential OMP pathways. Our results showed a strong positive correlation between dissolved methane concentrations and bloom events. Metagenomic data and nutrients, mainly orthophosphate, nitrogen, iron, and methane concentrations, suggest that the organic phosphorous demethylation pathway has the most potential to drive OMP in lakes with blooms. A specialized bacterial community was identified, including the Cyanobacteria Raphidiopsis, although the bloom does not contain the genes to carry out this process. These data showed enough evidence to infer the occurrence of an OMP pathway at Pantanal soda lakes, including the microbial sources and their relation to the cyanobacterial blooms.
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Affiliation(s)
- C R Carvalho
- College of Agriculture 'Luiz de Queiroz', University of São Paulo, Piracicaba, São Paulo, Brazil
- Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil
| | - B C E Souza
- Department of Biological Sciences, State University of Feira de Santana, Feira de Santana, Bahia, Brazil
| | - W Bieluczyk
- Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil
| | - Y B Feitosa
- Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil
| | - E Delbaje
- Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil
| | - P B Camargo
- Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil
| | - S M Tsai
- Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil
| | - Marli F Fiore
- Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil.
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Viana JLM, Steffler DA, Hernández AH, Dos Santos Costa J, Pellegrinetti TA, de Jesus ECR, Cancian M, Fiore MF, Rezende-Filho AT, Sussulini A, Barbiero L, Menegario AA, Fostier AH. Bioaccumulation and speciation of arsenic in plankton from tropical soda lakes along a salinity gradient. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 895:165189. [PMID: 37391131 DOI: 10.1016/j.scitotenv.2023.165189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Revised: 05/19/2023] [Accepted: 06/26/2023] [Indexed: 07/02/2023]
Abstract
Uptake and transformation of arsenic (As) by living organisms can alter its distribution and biogeochemical cycles in the environment. Although well known for its toxicity, several aspects of As accumulation and biological transformation by field species are still little explored. In this study, the bioaccumulation and speciation of As in phytoplankton and zooplankton from five soda lakes in the Brazilian Pantanal wetland were studied. Such lakes exhibited contrasting biogeochemical characteristics along an environmental gradient. Additionally, the influence of contrasting climatic events was assessed by collecting samples during an exceptional drought in 2017 and a flood in 2018. Total As (AsTot) content and speciation were determined using spectrometric techniques, while a suspect screening of organoarsenicals in plankton samples was carried out by high-resolution mass spectrometry. Results showed that AsTot content ranged from 16.9 to 62.0 mg kg-1 during the dry period and from 2.4 to 12.3 mg kg-1 during the wet period. The bioconcentration and bioaccumulation factors (BCF and BAF) in phytoplankton and zooplankton were found to be highly dependent on the lake typology, which is influenced by an ongoing evapoconcentration process in the region. Eutrophic and As-enriched lakes exhibited the lowest BCF and BAF values, possibly due to the formation of non-labile As complexes with organic matter or limited uptake of As by plankton caused by high salinity stress. The season played a decisive role in the results, as significantly higher BCF and BAF values were observed during the flooding event when the concentration of dissolved As in water was low. The diversity of As species was found to be dependent on the lake typology and on the resident biological community, cyanobacteria being responsible for a significant portion of As metabolism. Arsenosugars and their degradation products were detected in both phytoplankton and zooplankton, providing evidence for previously reported detoxification pathways. Although no biomagnification pattern was observed, the diet seemed to be an important exposure pathway for zooplankton.
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Affiliation(s)
- José Lucas Martins Viana
- Institute of Chemistry, University of Campinas, UNICAMP, P.O. Box 6154, 13083-970 Campinas, SP, Brazil.
| | - Débora Aparecida Steffler
- Institute of Chemistry, University of Campinas, UNICAMP, P.O. Box 6154, 13083-970 Campinas, SP, Brazil
| | | | - Juliana Dos Santos Costa
- Center for Nuclear Energy in Agriculture, University of São Paulo, Avenida Centenario 303, 13400-970 Piracicaba, SP, Brazil
| | | | | | - Marianna Cancian
- Institute of Chemistry, University of Campinas, UNICAMP, P.O. Box 6154, 13083-970 Campinas, SP, Brazil
| | - Marli Fátima Fiore
- Center for Nuclear Energy in Agriculture, University of São Paulo, Avenida Centenario 303, 13400-970 Piracicaba, SP, Brazil
| | | | - Alessandra Sussulini
- Institute of Chemistry, University of Campinas, UNICAMP, P.O. Box 6154, 13083-970 Campinas, SP, Brazil
| | - Laurent Barbiero
- Institute of Chemistry, University of Campinas, UNICAMP, P.O. Box 6154, 13083-970 Campinas, SP, Brazil; Université P. Sabatier, IRD, CNRS, OMP, Géoscience Environnement Toulouse (GET), 14 Avenue Edouard Belin, F31400 Toulouse, France; Center of Sciences and Technologies for Sustainability, São Carlos Federal University, Sorocaba, SP 18052-780, Brazil
| | - Amauri Antonio Menegario
- São Paulo State University (UNESP), Environmental Studies Center, Av. 24-A, 1515, 13506-900 Rio Claro, SP, Brazil
| | - Anne Helene Fostier
- Institute of Chemistry, University of Campinas, UNICAMP, P.O. Box 6154, 13083-970 Campinas, SP, Brazil
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Hechavarría-Hernández A, Viana JLM, Barbiero L, Rezende-Filho AT, Montes CR, Melfi AJ, Fostier AH. Spatial and seasonal variation of arsenic speciation in Pantanal soda lakes. CHEMOSPHERE 2023; 329:138672. [PMID: 37060957 DOI: 10.1016/j.chemosphere.2023.138672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Revised: 03/22/2023] [Accepted: 04/10/2023] [Indexed: 05/03/2023]
Abstract
The occurrence of high arsenic concentrations (up to 3000 μg L-1) in water of soda lakes of the Pantanal wetland is a remarkable case of natural arsenic contamination in South America. However, little is known about arsenic speciation in this environment, particularly regarding speciation changes related to lake trophic status and seasonal variations. To fill this gap, arsenic speciation analysis was carried out in surface (SW) and subsurface (SSW) waters sampled in five soda lakes with different eutrophication status, in two dry and one wet season. As(V) was the dominant species in these waters, while As(III), DMA, MMA and likely complex organic species were present in lower amounts. The results allow to conclude that the arsenic speciation in SW and SSW varies seasonally according to the regional wet or dry periods and lake water levels. In eutrophic turbid and in oligotrophic vegetated soda lakes, arsenic speciation was also characterized by spatial differences between edge and center or between the SW and SSW. Cyanobacteria or macrophytes/algae are involved in arsenic biotransformation in soda lakes through its metabolic and detoxification processes. Significant variation in surface water arsenic speciation occurs as a result of seasonal primary production fluctuation or water arsenic concentration changes in the soda lakes, increasing organoarsenics in dry periods, whereas in flood periods, As(V) prevails. Spatial distribution of arsenic species is significantly impacted by biogeochemical conditions at the water/sediment interface in soda lakes.
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Affiliation(s)
| | | | - Laurent Barbiero
- Université P. Sabatier, IRD, CNRS, OMP, Géoscience Environnement Toulouse (GET), 14 Avenue Edouard Belin, F31400, Toulouse, France
| | - Ary Tavares Rezende-Filho
- Faculty of Engineering, Architecture and Urbanism and Geography, Federal University of Mato Grosso do Sul (UFMS), Campo Grande, MS, Brazil
| | | | | | - Anne Helene Fostier
- Institute of Chemistry, University of Campinas, UNICAMP, 6154, 13083-970, Campinas, SP, Brazil.
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Pellegrinetti TA, Cotta SR, Sarmento H, Costa JS, Delbaje E, Montes CR, Camargo PB, Barbiero L, Rezende-Filho AT, Fiore MF. Bacterial Communities Along Environmental Gradients in Tropical Soda Lakes. MICROBIAL ECOLOGY 2023; 85:892-903. [PMID: 35916937 DOI: 10.1007/s00248-022-02086-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 07/25/2022] [Indexed: 05/04/2023]
Abstract
Soda lake environments are known to be variable and can have distinct differences according to geographical location. In this study, we investigated the effects of different environmental conditions of six adjacent soda lakes in the Pantanal biome (Mato Grosso do Sul state, Brazil) on bacterial communities and their functioning using a metagenomic approach combined with flow cytometry and chemical analyses. Ordination analysis using flow cytometry and water chemistry data from two sampling periods (wet and dry) clustered soda lakes into three different profiles: eutrophic turbid (ET), oligotrophic turbid (OT), and clear vegetated oligotrophic (CVO). Analysis of bacterial community composition and functioning corroborated this ordination; the exception was one ET lake, which was similar to one OT lake during the wet season, indicating drastic shifts between seasons. Microbial abundance and diversity increased during the dry period, along with a considerable number of limnological variables, all indicative of a strong effect of the precipitation-evaporation balance in these systems. Cyanobacteria were associated with high electric conductivity, pH, and nutrient availability, whereas Actinobacteria, Alphaproteobacteria, and Betaproteobacteria were correlated with landscape morphology variability (surface water, surface perimeter, and lake volume) and with lower salinity and pH levels. Stress response metabolism was enhanced in OT and ET lakes and underrepresented in CVO lakes. The microbiome dataset of this study can serve as a baseline for restoring impacted soda lakes. Altogether, the results of this study demonstrate the sensitivity of tropical soda lakes to climate change, as slight changes in hydrological regimes might produce drastic shifts in community diversity.
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Affiliation(s)
- Thierry A Pellegrinetti
- Center for Nuclear Energy in Agriculture, University of São Paulo, Avenida Centenário 303, Piracicaba, São Paulo, 13416-000, Brazil
| | - Simone R Cotta
- Center for Nuclear Energy in Agriculture, University of São Paulo, Avenida Centenário 303, Piracicaba, São Paulo, 13416-000, Brazil
| | - Hugo Sarmento
- Department of Hydrobiology, Federal University of São Carlos (UFSCar), São Carlos, São Paulo, 13565-905, Brazil
| | - Juliana S Costa
- Center for Nuclear Energy in Agriculture, University of São Paulo, Avenida Centenário 303, Piracicaba, São Paulo, 13416-000, Brazil
| | - Endrews Delbaje
- Center for Nuclear Energy in Agriculture, University of São Paulo, Avenida Centenário 303, Piracicaba, São Paulo, 13416-000, Brazil
| | - Celia R Montes
- Center for Nuclear Energy in Agriculture, University of São Paulo, Avenida Centenário 303, Piracicaba, São Paulo, 13416-000, Brazil
| | - Plinio B Camargo
- Center for Nuclear Energy in Agriculture, University of São Paulo, Avenida Centenário 303, Piracicaba, São Paulo, 13416-000, Brazil
| | - Laurent Barbiero
- The Observatory Midi-Pyrénées, Geoscience Environment Toulouse, Research Institute for Development, The National Center for Research Scientific, Paul Sabatier University, 31400, Toulouse, France
| | - Ary T Rezende-Filho
- Faculty of Engineering, Architecture and Urbanism and Geography, Federal University of Mato Grosso do Sul, Mato Grosso do Sul, Campo Grande, 79070-900, Brazil
| | - Marli F Fiore
- Center for Nuclear Energy in Agriculture, University of São Paulo, Avenida Centenário 303, Piracicaba, São Paulo, 13416-000, Brazil.
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Jeilu O, Gessesse A, Simachew A, Johansson E, Alexandersson E. Prokaryotic and eukaryotic microbial diversity from three soda lakes in the East African Rift Valley determined by amplicon sequencing. Front Microbiol 2022; 13:999876. [PMID: 36569062 PMCID: PMC9772273 DOI: 10.3389/fmicb.2022.999876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 11/11/2022] [Indexed: 12/12/2022] Open
Abstract
Soda lakes are unique poly-extreme environments with high alkalinity and salinity that support diverse microbial communities despite their extreme nature. In this study, prokaryotic and eukaryotic microbial diversity in samples of the three soda lakes, Lake Abijata, Lake Chitu and Lake Shala in the East African Rift Valley, were determined using amplicon sequencing. Culture-independent analysis showed higher diversity of prokaryotic and eukaryotic microbial communities in all three soda lakes than previously reported. A total of 3,603 prokaryotic and 898 eukaryotic operational taxonomic units (OTUs) were found through culture-independent amplicon sequencing, whereas only 134 bacterial OTUs, which correspond to 3%, were obtained by enrichment cultures. This shows that only a fraction of the microorganisms from these habitats can be cultured under laboratory conditions. Of the three soda lakes, samples from Lake Chitu showed the highest prokaryotic diversity, while samples from Lake Shala showed the lowest diversity. Pseudomonadota (Halomonas), Bacillota (Bacillus, Clostridia), Bacteroidota (Bacteroides), Euryarchaeota (Thermoplasmata, Thermococci, Methanomicrobia, Halobacter), and Nanoarchaeota (Woesearchaeia) were the most common prokaryotic microbes in the three soda lakes. A high diversity of eukaryotic organisms were identified, primarily represented by Ascomycota and Basidiomycota. Compared to the other two lakes, a higher number of eukaryotic OTUs were found in Lake Abijata. The present study showed that these unique habitats harbour diverse microbial genetic resources with possible use in biotechnological applications, which should be further investigated by functional metagenomics.
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Affiliation(s)
- Oliyad Jeilu
- Institute of Biotechnology, Addis Ababa University, Addis Ababa, Ethiopia,Department of Plant Breeding, Swedish University of Agricultural Sciences, Lomma, Sweden,*Correspondence: Oliyad Jeilu,
| | - Amare Gessesse
- Institute of Biotechnology, Addis Ababa University, Addis Ababa, Ethiopia,Department of Biological Sciences and Biotechnology, Botswana International University of Science and Technology, Palapye, Botswana
| | - Addis Simachew
- Institute of Biotechnology, Addis Ababa University, Addis Ababa, Ethiopia
| | - Eva Johansson
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Lomma, Sweden
| | - Erik Alexandersson
- Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Lomma, Sweden
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Díaz-Torres O, Lugo-Melchor OY, de Anda J, Orozco-Nunnelly DA, Gradilla-Hernández MS, Senés-Guerrero C. Characterizing a subtropical hypereutrophic lake: From physicochemical variables to shotgun metagenomic data. Front Microbiol 2022; 13:1037626. [DOI: 10.3389/fmicb.2022.1037626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Accepted: 10/31/2022] [Indexed: 12/05/2022] Open
Abstract
Lake Cajititlán is a subtropical and endorheic lake, which is heavily impacted by nutrient pollution. Agricultural runoff and poorly treated wastewater have entered this reservoir at alarming rates during past rainy seasons, causing the cultural eutrophication of this body of water and resulting in several massive fish kill events. In this study, shotgun metagenomic sequencing was used to examine the taxonomic and functional structure of microbial communities in Lake Cajititlán during the rainy season. Several water quality features and their interactions with microbial communities were also assessed to identify the major factors affecting the water quality and biota, specifically fish species. According to current water quality regulations, most of the physicochemical variables analyzed (dissolved oxygen, pH, Secchi disk, NH4+, NO3−, blue-green algae, total phosphorus, and chlorophyll-a) were outside of the permissible limits. Planktothrix agardhii and Microcystis aeruginosa were the most abundant phytoplankton species, and the dominant bacterial genera were Pseudomonas, Streptomyces, and Flavobacterium, with Pseudomonas fluorescens, Stenotrophomonas maltophilia, and Aeromonas veronii representing the most abundant bacterial species. All of these microorganisms have been reported to be potentially harmful to fish, and the latter three (P. fluorescens, S. maltophilia, A. veronii) also contain genes associated with pathogenicity in fish mortality (fur, luxS, aer, act, aha, exu, lip, ser). Genetic evidence from the microbial communities analyzed herein reveals that anthropogenic sources of nutrients in the lake altered genes involved in nitrogen, phosphorus, sulfur, and carbon metabolism, mainly at the beginning of the rainy season. These findings suggest that abiotic factors influence the structure of the microbial communities, along with the major biogeochemical cycles of Lake Cajititlán, resulting in temporal variations and an excess of microorganisms that can thrive in high-nutrient and low-oxygen environments. After reviewing the literature, this appears to be the first study that focuses on characterizing the water quality of a subtropical hypereutrophic lake through associations between physicochemical variables and shotgun metagenomic data. In addition, there are few studies that have coupled the metabolism of aquatic ecosystems with nutrient cycles.
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Ou-Yang T, Yang SQ, Zhao L, Ji LL, Shi JQ, Wu ZX. Temporal heterogeneity of bacterial communities and their responses to Raphidiopsis raciborskii blooms. Microbiol Res 2022; 262:127098. [PMID: 35753182 DOI: 10.1016/j.micres.2022.127098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Revised: 05/30/2022] [Accepted: 06/15/2022] [Indexed: 11/18/2022]
Abstract
To elucidate the interspecies connectivity between cyanobacteria and other bacteria (noncyanobacteria), microbial diversity and composition were investigated through high-throughput sequencing (HTS) in a drinking water reservoir in Chongqing city, Southwest China, during Raphidiopsis raciborskii blooms. Significant temporal changes were observed in microbial community composition during the sampling period, primarily reflected by variations in relative bacterial abundance. The modularity analysis of the network demonstrated that the bacterial community forms co-occurrence/exclusion patterns in response to variations in environmental factors. Moreover, five modules involved in the dynamic phases of the R. raciborskii bloom were categorized into the Pre-Bloom, Bloom, Post-Bloom, and Non-Bloom Groups. The reservoir was eutrophic (i.e., the average concentrations of total nitrogen (TN) and total phosphorus (TP) were 2.32 and 0.07 mg L-1, respectively) during the investigation; however, Pearson's correlation coefficient showed that R. raciborskii was not significantly correlated with nitrogen and phosphorus. However, other environmental factors, such as water temperature, pH, and the permanganate index, were positively correlated with R. raciborskii. Importantly, Proteobacteria (α-, γ-Proteobacteria), Acidobacteria, Chloroflexi, and Firmicutes were preferentially associated with increased R. raciborskii blooms. These results suggested that the transition of R. raciborskii bloom-related microbial modules and their keystone species could be crucial in the development and collapse of R. raciborskii blooms and could provide a fundamental basis for understanding the linkage between the structure and function of the microbial community during bloom dynamics.
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Affiliation(s)
- Tian Ou-Yang
- Key Laboratory of Eco-environments in Three Gorges Reservoir Region (Ministry of Education), Chongqing Key Laboratory of Plant Ecology and Resources Research in Three Gorges Reservoir Region, School of Life Science, Southwest University, Chongqing 400715, PR China
| | - Song-Qi Yang
- Key Laboratory of Eco-environments in Three Gorges Reservoir Region (Ministry of Education), Chongqing Key Laboratory of Plant Ecology and Resources Research in Three Gorges Reservoir Region, School of Life Science, Southwest University, Chongqing 400715, PR China
| | - Lu Zhao
- Key Laboratory of Eco-environments in Three Gorges Reservoir Region (Ministry of Education), Chongqing Key Laboratory of Plant Ecology and Resources Research in Three Gorges Reservoir Region, School of Life Science, Southwest University, Chongqing 400715, PR China
| | - Lu-Lu Ji
- Key Laboratory of Eco-environments in Three Gorges Reservoir Region (Ministry of Education), Chongqing Key Laboratory of Plant Ecology and Resources Research in Three Gorges Reservoir Region, School of Life Science, Southwest University, Chongqing 400715, PR China
| | - Jun-Qiong Shi
- Key Laboratory of Eco-environments in Three Gorges Reservoir Region (Ministry of Education), Chongqing Key Laboratory of Plant Ecology and Resources Research in Three Gorges Reservoir Region, School of Life Science, Southwest University, Chongqing 400715, PR China
| | - Zhong-Xing Wu
- Key Laboratory of Eco-environments in Three Gorges Reservoir Region (Ministry of Education), Chongqing Key Laboratory of Plant Ecology and Resources Research in Three Gorges Reservoir Region, School of Life Science, Southwest University, Chongqing 400715, PR China.
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Cotta SR, Pellegrinetti TA, Andreote APD, Costa JS, Sarmento H, Fiore MF. Disentangling the lifestyle of bacterial communities in tropical soda lakes. Sci Rep 2022; 12:7939. [PMID: 35562544 PMCID: PMC9106740 DOI: 10.1038/s41598-022-12046-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Accepted: 04/22/2022] [Indexed: 11/09/2022] Open
Abstract
Microbial lifestyles may reveal niche-specific signatures and can contribute to detecting the effects of abiotic fluctuations on biogeochemical cycles. Microorganisms make a tradeoff between optimizing nutrient uptake, improving biomass yield, and overcoming environmental changes according to environmental hostility. Soda lakes are natural environments rich in carbonate and bicarbonate water, resulting in elevated pH and salinities that frequently approach saturation. We hypothesized that during the dry period (elevated pH and salinity), microorganisms try to overcome this harshness by allocating energy to the cellular maintenance process. As these environmental conditions improve during the wet period, microorganisms will begin to invest in nutrient uptake. To test this hypothesis, we evaluated four soda lakes in two different seasons by applying metagenomics combined with flow cytometry (estimate heterotrophic bacterial biomass). The natural occurrence of cyanobacterial blooms in some lakes is the main driver of carbon. These primary producers provide organic carbon that supports heterotrophic bacterial growth and, consequently, a high biomass yield. Under harsh conditions (dry season), cyanobacteria invest in nutrient uptake mechanisms, whereas heterotrophic bacteria allocate energy to survive at the expense of biomass yield. Lakes without cyanobacteria blooms invest in nutrient uptake independent of environmental hostility. This study clarifies the microbial tradeoffs in hostile environments and the impact of this choice on carbon and energy flux in tropical alkaline lakes.
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Affiliation(s)
- Simone R Cotta
- Center of Nuclear Energy in Agriculture (CENA/USP), University of São Paulo, Piracicaba, SP, CEP: 13416-903, Brazil
| | - Thierry A Pellegrinetti
- Center of Nuclear Energy in Agriculture (CENA/USP), University of São Paulo, Piracicaba, SP, CEP: 13416-903, Brazil
| | - Ana Paula D Andreote
- Center of Nuclear Energy in Agriculture (CENA/USP), University of São Paulo, Piracicaba, SP, CEP: 13416-903, Brazil
| | - Juliana S Costa
- Center of Nuclear Energy in Agriculture (CENA/USP), University of São Paulo, Piracicaba, SP, CEP: 13416-903, Brazil
| | - Hugo Sarmento
- Department of Hydrobiology, Federal University of São Carlos, São Carlos, SP, Brazil
| | - Marli F Fiore
- Center of Nuclear Energy in Agriculture (CENA/USP), University of São Paulo, Piracicaba, SP, CEP: 13416-903, Brazil.
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Elias LP, Menegário AA, Hernández AH, Eismann CE, Martins Viana JL, Pedrobom JH, Geraldo de Oliveira Junior E, Barbiero L, Fostier AH. In situ fractionation and redox speciation of arsenic in soda lakes of Nhecolândia (Pantanal, Brazil) using the diffusive gradients in thin films (DGT) technique. CHEMOSPHERE 2022; 288:132592. [PMID: 34662636 DOI: 10.1016/j.chemosphere.2021.132592] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 10/12/2021] [Accepted: 10/14/2021] [Indexed: 06/13/2023]
Abstract
In situ fractionation and redox speciation of As in three different saline-alkaline lakes (green, black and crystalline lakes) in the Pantanal of Nhecolândia (Brazil) were performed by using Diffusive Gradients in Thin films (DGT). The results indicated that As is present mainly in dissolved form. Total As concentration was similar when using different filter membranes, demonstrating that the species adsorbed by DGT devices were <10 kDa. Higher concentrations of labile total As were observed in the center of the lakes, indicating that the nature of the organic matter influences the formation of As complexes. Total As concentrations determined by using ZrO2 DGT were consistent with As concentration in ultrafiltered water samples collected in the black lake. However, part of the data about As(III) obtained in grab samples contrasted with DGT results. The differences observed may indicate that alterations in the species occur during the storage period before analysis by ultrafiltration. As(III) concentrations measured by DGT in the black and crystalline lakes were 1-3 μg L-1 and 4-7 μg L-1, respectively, accounting for only 4%-8% of the total DGT inorganic As. In the green lake, As(III) concentrations were significantly higher at the center (217 μg L-1). Both the phytoplankton community and the dissolved organic carbon influence the As speciation and bioavailability in the lakes of Nhecolândia. The DGT approach used in the present work was able to perform As speciation and demonstrates that in situ sampling analytical techniques are essential in understanding As speciation and its behavior in complex natural aquatic systems.
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Affiliation(s)
- Lucas Pellegrini Elias
- São Paulo State University (Unesp), Environmental Studies Center, Av. 24-A, 1515, Postal Code: 13506-900, Rio Claro, SP, Brazil
| | - Amauri Antonio Menegário
- São Paulo State University (Unesp), Environmental Studies Center, Av. 24-A, 1515, Postal Code: 13506-900, Rio Claro, SP, Brazil.
| | - Amauris Hechavarría Hernández
- University of Campinas (Unicamp), Institute of Chemistry, Cidade Universitária "Zeferino Vaz", Postal Code: 13083-970, Campinas, SP, Brazil
| | - Carlos Eduardo Eismann
- São Paulo State University (Unesp), Environmental Studies Center, Av. 24-A, 1515, Postal Code: 13506-900, Rio Claro, SP, Brazil
| | - José Lucas Martins Viana
- University of Campinas (Unicamp), Institute of Chemistry, Cidade Universitária "Zeferino Vaz", Postal Code: 13083-970, Campinas, SP, Brazil
| | - Jorge Henrique Pedrobom
- São Paulo State University (Unesp), Environmental Studies Center, Av. 24-A, 1515, Postal Code: 13506-900, Rio Claro, SP, Brazil
| | | | - Laurent Barbiero
- Université P. Sabatier, IRD, CNRS, OMP, Géoscience Environnement Toulouse (GET), 14 Avenue Edouard Belin, F31400, Toulouse, France
| | - Anne Hélène Fostier
- University of Campinas (Unicamp), Institute of Chemistry, Cidade Universitária "Zeferino Vaz", Postal Code: 13083-970, Campinas, SP, Brazil
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11
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Viana JLM, Souza AFD, Hernández AH, Elias LP, Eismann CE, Rezende-Filho AT, Barbiero L, Menegario AA, Fostier AH. In situ arsenic speciation at the soil/water interface of saline-alkaline lakes of the Pantanal, Brazil: A DGT-based approach. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 804:150113. [PMID: 34520925 DOI: 10.1016/j.scitotenv.2021.150113] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Revised: 08/25/2021] [Accepted: 08/30/2021] [Indexed: 06/13/2023]
Abstract
Arsenic (As) is a naturally occurring element in the Earth's crust, exhibiting toxicity towards a wide range of living organisms. Its properties and environmental dynamics are strongly regulated by its speciation, and the species As(III) and As(V) are the most commonly found in environmental systems. Recently, high concentrations of As were found in saline-alkaline lakes of the Pantanal (Brazil), which is the largest wetland area in the world. Therefore, we evaluated As contamination and its redox speciation (As(III) and As(V)) at the soil/water interface of biogeochemically distinct saline-alkaline lakes of Pantanal wetlands (Brazil). Both conventional sampling and in situ diffusive gradients in thin films (DGT) technique were employed. Zirconium oxide and 3-mercaptopropyl were used as ligand phases in DGT to selectively bind As species. High concentrations of total dissolved As in a shallow water table were found (<2337.5 μg L-1), whereas levels in soils were up to 2.4 μg g-1. Distinct scenarios were observed when comparing speciation analysis through spot sampling and DGT. Considering spot sampling, As(V) was the main species detected, whereas As(III) was only detected in only a few samples (<4.2 μg L-1). Conversely, results obtained by DGT showed that labile As(III) dominated arsenic speciation at the soil/water interface with levels up to 203.0 μg L-1. Coupling DGT data and DGT induced fluxes in sediments and soils model allowed obtaining kinetic data, showing that the soil barely participated in the arsenic dynamics on the shore of the lakes, and that this participation depends on the evapoconcentration process occurring in the region. Therefore, soil acts like a nonreactive matrix depending on the natural concentration process. In addition, our results reinforced the different geochemical characteristics of the studied saline-alkaline lakes and highlights the importance of robust passive sampling techniques in the context of metal/metalloid speciation in environmental analysis.
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Affiliation(s)
| | - Adriana Felix de Souza
- Institute of Chemistry, University of Campinas, UNICAMP, 6154, 13083-970 Campinas, SP, Brazil
| | | | - Lucas Pellegrini Elias
- São Paulo State University (UNESP), Environmental Studies Center, Av. 24-A, 1515, 13506-900 Rio Claro, SP, Brazil
| | - Carlos Eduardo Eismann
- São Paulo State University (UNESP), Environmental Studies Center, Av. 24-A, 1515, 13506-900 Rio Claro, SP, Brazil
| | | | - Laurent Barbiero
- Université P. Sabatier, IRD, CNRS, OMP, Géoscience Environnement Toulouse (GET), 14 Avenue Edouard Belin, F31400 Toulouse, France
| | - Amauri Antonio Menegario
- São Paulo State University (UNESP), Environmental Studies Center, Av. 24-A, 1515, 13506-900 Rio Claro, SP, Brazil
| | - Anne Hélène Fostier
- Institute of Chemistry, University of Campinas, UNICAMP, 6154, 13083-970 Campinas, SP, Brazil.
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12
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Delbaje E, Andreote APD, Pellegrinetti TA, Cruz RB, Branco LHZ, Fiore MF. Phylogenomic analysis of Anabaenopsis elenkinii (Nostocales, Cyanobacteria). Int J Syst Evol Microbiol 2021; 71. [PMID: 33476257 DOI: 10.1099/ijsem.0.004648] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The saline-alkaline lakes (soda lakes) are the habitat of the haloalkaliphilic cyanobacterium Anabaenopsis elenkinii, the type species of this genus. To obtain robust phylogeny of this type species, we have generated whole-genome sequencing of the bloom-forming Anabaenopsis elenkinii strain CCIBt3563 isolated from a Brazilian soda lake. This strain presents the typical morphology of A. elenkinii with short and curved trichomes with apical heterocytes established after separation of paired intercalary heterocytes and also regarding to cell dimensions. Its genome size is 4 495 068 bp, with a G+C content of 41.98 %, a total of 3932 potential protein coding genes and four 16S rRNA genes. Phylogenomic tree inferred by RAxML based on the alignment of 120 conserved proteins using GTDB-Tk grouped A. elenkinii CCIBt3563 together with other genera of the family Aphanizomenonaceae. However, the only previous available genome of Anabaenopsis circularis NIES-21 was distantly positioned within a clade of Desikacharya strains, a genus from the family Nostocaceae. Furthermore, average nucleotide identity values from 86-98 % were obtained among NIES-21 and Desikacharya genomes, while this value was 76.04 % between NIES-21 and the CCIBt3563 genome. These findings were also corroborated by the phylogenetic tree of 16S rRNA gene sequences, which also showed a strongly supported subcluster of A. elenkinii strains from Brazilian, Mexican and Kenyan soda lakes. This study presents the phylogenomics and genome-scale analyses of an Anabaenopsis elenkinii strain, improving molecular basis for demarcation of this species and framework for the classification of cyanobacteria based on the polyphasic approach.
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Affiliation(s)
- Endrews Delbaje
- University of São Paulo, Center for Nuclear Energy in Agriculture, Avenida Centenário 303, 13400-970 Piracicaba, SP, Brazil
| | - Ana Paula D Andreote
- University of São Paulo, Center for Nuclear Energy in Agriculture, Avenida Centenário 303, 13400-970 Piracicaba, SP, Brazil
| | - Thierry A Pellegrinetti
- University of São Paulo, Center for Nuclear Energy in Agriculture, Avenida Centenário 303, 13400-970 Piracicaba, SP, Brazil
| | - Renata B Cruz
- University of São Paulo, Center for Nuclear Energy in Agriculture, Avenida Centenário 303, 13400-970 Piracicaba, SP, Brazil
| | - Luis H Z Branco
- São Paulo State University, Institute of Bioscience, Languages and Exact Sciences, 15054-000 São José do Rio Preto, SP, Brazil
| | - Marli F Fiore
- University of São Paulo, Center for Nuclear Energy in Agriculture, Avenida Centenário 303, 13400-970 Piracicaba, SP, Brazil
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Gushgari-Doyle S, Oremland RS, Keren R, Baesman SM, Akob DM, Banfield JF, Alvarez-Cohen L. Acetylene-Fueled Trichloroethene Reductive Dechlorination in a Groundwater Enrichment Culture. mBio 2021; 12:e02724-20. [PMID: 33531396 PMCID: PMC7858054 DOI: 10.1128/mbio.02724-20] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Accepted: 11/23/2020] [Indexed: 01/14/2023] Open
Abstract
In aquifers, acetylene (C2H2) is a product of abiotic degradation of trichloroethene (TCE) catalyzed by in situ minerals. C2H2 can, in turn, inhibit multiple microbial processes including TCE dechlorination and metabolisms that commonly support dechlorination, in addition to supporting the growth of acetylenotrophic microorganisms. Previously, C2H2 was shown to support TCE reductive dechlorination in synthetic, laboratory-constructed cocultures containing the acetylenotroph Pelobacter sp. strain SFB93 and Dehalococcoides mccartyi strain 195 or strain BAV1. In this study, we demonstrate TCE and perchloroethene (PCE) reductive dechlorination by a microbial community enriched from contaminated groundwater and amended with C2H2 as the sole electron donor and organic carbon source. The metagenome of the stable, enriched community was analyzed to elucidate putative community functions. A novel anaerobic acetylenotroph in the phylum Actinobacteria was identified using metagenomic analysis. These results demonstrate that the coupling of acetylenotrophy and reductive dechlorination can occur in the environment with native bacteria and broaden our understanding of biotransformation at contaminated sites containing both TCE and C2H2IMPORTANCE Understanding the complex metabolisms of microbial communities in contaminated groundwaters is a challenge. PCE and TCE are among the most common groundwater contaminants in the United States that, when exposed to certain minerals, exhibit a unique abiotic degradation pathway in which C2H2 is a product. C2H2 can act as both an inhibitor of TCE dechlorination and of supporting metabolisms and an energy source for acetylenotrophic bacteria. Here, we combine laboratory microcosm studies with computational approaches to enrich and characterize an environmental microbial community that couples two uncommon metabolisms, demonstrating unique metabolic interactions only yet reported in synthetic, laboratory-constructed settings. Using this comprehensive approach, we have identified the first reported anaerobic acetylenotroph in the phylum Actinobacteria, demonstrating the yet-undescribed diversity of this metabolism that is widely considered to be uncommon.
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Affiliation(s)
- Sara Gushgari-Doyle
- Department of Civil and Environmental Engineering, University of California, Berkeley, California, USA
| | | | - Ray Keren
- Department of Civil and Environmental Engineering, University of California, Berkeley, California, USA
- Department of Earth and Planetary Sciences, University of California, Berkeley, California, USA
| | | | | | - Jillian F Banfield
- Department of Earth and Planetary Sciences, University of California, Berkeley, California, USA
| | - Lisa Alvarez-Cohen
- Department of Civil and Environmental Engineering, University of California, Berkeley, California, USA
- Earth and Environmental Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
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14
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Szabó A, Korponai K, Somogyi B, Vajna B, Vörös L, Horváth Z, Boros E, Szabó-Tugyi N, Márialigeti K, Felföldi T. Grazing pressure-induced shift in planktonic bacterial communities with the dominance of acIII-A1 actinobacterial lineage in soda pans. Sci Rep 2020; 10:19871. [PMID: 33199773 PMCID: PMC7669872 DOI: 10.1038/s41598-020-76822-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Accepted: 09/18/2020] [Indexed: 11/23/2022] Open
Abstract
Astatic soda pans of the Pannonian Steppe are unique environments with respect to their multiple extreme physical and chemical characteristics (high daily water temperature fluctuation, high turbidity, alkaline pH, salinity, polyhumic organic carbon concentration, hypertrophic state and special ionic composition). However, little is known about the seasonal dynamics of the bacterial communities inhabiting these lakes and the role of environmental factors that have the main impact on their structure. Therefore, two soda pans were sampled monthly between April 2013 and July 2014 to reveal changes in the planktonic community. By late spring in both years, a sudden shift in the community structure was observed, the previous algae-associated bacterial communities had collapsed, resulting the highest ratio of Actinobacteria within the bacterioplankton (89%, with the dominance of acIII-A1 lineage) ever reported in the literature. Before these peaks, an extremely high abundance (> 10,000 individuum l-1) of microcrustaceans (Moina brachiata and Arctodiaptomus spinosus) was observed. OTU-based statistical approaches showed that in addition to algal blooms and water-level fluctuations, zooplankton densities had the strongest effect on the composition of bacterial communities. In these extreme environments, this implies a surprisingly strong, community-shaping top-down role of microcrustacean grazers.
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Affiliation(s)
- Attila Szabó
- Department of Microbiology, ELTE Eötvös Loránd University, Pázmány Péter stny. 1/C, Budapest, 1117, Hungary.
| | - Kristóf Korponai
- Department of Microbiology, ELTE Eötvös Loránd University, Pázmány Péter stny. 1/C, Budapest, 1117, Hungary
| | - Boglárka Somogyi
- Centre for Ecological Research, Balaton Limnological Institute, Klebelsberg Kunó u. 3, Tihany, 8237, Hungary
| | - Balázs Vajna
- Department of Microbiology, ELTE Eötvös Loránd University, Pázmány Péter stny. 1/C, Budapest, 1117, Hungary
| | - Lajos Vörös
- Centre for Ecological Research, Balaton Limnological Institute, Klebelsberg Kunó u. 3, Tihany, 8237, Hungary
| | - Zsófia Horváth
- Centre for Ecological Research, Balaton Limnological Institute, Klebelsberg Kunó u. 3, Tihany, 8237, Hungary
| | - Emil Boros
- Centre for Ecological Research, Danube Research Institute, Karolina út 29, Budapest, 1113, Hungary
| | - Nóra Szabó-Tugyi
- Centre for Ecological Research, Balaton Limnological Institute, Klebelsberg Kunó u. 3, Tihany, 8237, Hungary
| | - Károly Márialigeti
- Department of Microbiology, ELTE Eötvös Loránd University, Pázmány Péter stny. 1/C, Budapest, 1117, Hungary
| | - Tamás Felföldi
- Department of Microbiology, ELTE Eötvös Loránd University, Pázmány Péter stny. 1/C, Budapest, 1117, Hungary
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15
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Diversity and characterization of culturable haloalkaliphilic bacteria from two distinct hypersaline lakes in northern Egypt. Biologia (Bratisl) 2020. [DOI: 10.2478/s11756-020-00609-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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16
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Samylina OS, Namsaraev ZB, Grouzdev DS, Slobodova NV, Zelenev VV, Borisenko GV, Sorokin DY. The patterns of nitrogen fixation in haloalkaliphilic phototrophic communities of Kulunda Steppe soda lakes (Altai, Russia). FEMS Microbiol Ecol 2020; 95:5621484. [PMID: 31712814 DOI: 10.1093/femsec/fiz174] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2019] [Accepted: 10/25/2019] [Indexed: 11/14/2022] Open
Abstract
Nitrogen fixation (NF) of phototrophic communities was studied in a number of soda lakes with a wide range of salinity (25-400 g/l) located in Kulunda Steppe (Altai, Russia) during several summer seasons (2011-2016). The phototrophic communities were represented by the algal-bacterial Ctenocladus communities or cyanobacterial biofilms dominated by heterocystous and non-heterocystous cyanobacteria and purple sulfur bacteria Ectothiorhodospira sp. (up to 210 g/l) and endoevaporitic Euhalothece communities dominated by the extremely salt-tolerant unicellular cyanobacterium Euhalothece sp. and Ectothiorhodospira sp. (above 350 g/l). Salinity was the major factor influencing the composition and NF potential of the phototrophic communities. The communities dominated by vegetative heterocystous cyanobacteria exhibited light-independent NF at total salinity up to 60 g/l. The communities dominated by non-heterocystous cyanobacteria exhibited light-dependent NF in a range of 55-100 g/l, but it was significantly suppressed at 100 g/l. At 160-200 g/l the dark heterotrophic NF was a prevailing process if communities didn't contain Euhalothece sp. At salt-saturating ranges above 350 g/l, light-dependent NF associated with the Euhalothece communities was detected. A statistically significant positive correlation between the NF and diurnal light intensity was found in all samples of communities dominated by non-heterocystous cyanobacteria in contrast to communities dominated by heterocystous cyanobacteria with insignificant correlation coefficients.
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Affiliation(s)
- Olga S Samylina
- Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia
| | | | - Denis S Grouzdev
- Institute of Bioengineering, Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia
| | | | - Vladimir V Zelenev
- Department of Microbiology, Biological Faculty, Moscow State University, Moscow, Russia
| | - Gennadii V Borisenko
- Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia
| | - Dimitry Y Sorokin
- Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences, Moscow, Russia.,Department of Biotechnology, Delft University of Technology, Delft, The Netherlands
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17
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Estimating Water pH Using Cloud-Based Landsat Images for a New Classification of the Nhecolândia Lakes (Brazilian Pantanal). REMOTE SENSING 2020. [DOI: 10.3390/rs12071090] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The Nhecolândia region, located in the southern portion of the Pantanal wetland area, is a unique lacustrine system where tens of thousands of saline-alkaline and freshwater lakes and ponds coexist in close proximity. These lakes are suspected to be a strong source of greenhouse gases (GHGs) to the atmosphere, the water pH being one of the key factors in controlling the biogeochemical functioning and, consequently, production and emission of GHGs in these lakes. Here, we present a new field-validated classification of the Nhecolândia lakes using water pH values estimated based on a cloud-based Landsat (5 TM, 7 ETM+, and 8 OLI) 2002–2017 time-series in the Google Earth Engine platform. Calibrated top-of-atmosphere (TOA) reflectance collections with the Fmask method were used to ensure the usage of only cloud-free pixels, resulting in a dataset of 2081 scenes. The pH values were predicted by applying linear multiple regression and symbolic regression based on genetic programming (GP). The regression model presented an R2 value of 0.81 and pH values ranging from 4.69 to 11.64. A lake mask was used to extract the predicted pH band that was then classified into three lake classes according to their pH values: Freshwater (pH < 8), oligosaline (pH 8–8.9), and saline (≥9). Nearly 12,150 lakes were mapped with those with saline waters accounting for 7.25%. Finally, a trend surface map was created using the ALOS PRISM Digital Surface Model (DSM) to analyze the correlation between landscape features (topography, connection with the regional drainage system, size, and shape of lakes) and types of lakes. The analysis was in consonance with previous studies that pointed out that saline lakes tend to occur in lower positions compared to freshwater lakes. The results open a relevant perspective for the transfer of locally acquired experimental data to the regional balances of the Nhecolândia lakes.
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18
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Richter L, Hernández AH, Pessôa GS, Arruda MAZ, Rezende-Filho AT, de Almeida RB, Menezes HA, Valles V, Barbiero L, Fostier AH. Dissolved arsenic in the upper Paraguay River basin and Pantanal wetlands. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 687:917-928. [PMID: 31412495 DOI: 10.1016/j.scitotenv.2019.06.147] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Revised: 06/07/2019] [Accepted: 06/09/2019] [Indexed: 06/10/2023]
Abstract
Although high levels of dissolved arsenic were detected in surface and ground waters of Nhecolândia, a sub-region of the vast Pantanal wetlands in Brazil, the possible sources have not been clearly identified and the potential release from the wetland to the draining rivers has not been investigated. In this study we measured the dissolved As content in all the rivers and small streams that supply the southern Pantanal region, as well as in the two main rivers draining the wetland, i.e., the Cuiaba and Paraguay rivers and tributaries. In addition, Arsenic in surface waters, perched water-table, soils and sediments from 3 experimental sites located in the heart of Nhecolândia were compared. On the one hand, the results show the absence of As contamination in rivers that supply the Pantanal floodplain, as well as a lack of significant release from the floodplain to the main drains. The As contents in the rivers are <2 μg L-1, with variations that depend on the lithology and on the geomorphology at the collection point (uplands or floodplain). On the other hand, they confirm the regional extension of As contamination in Nhecolândia's alkaline waters with some values above 3 mg L-1. Arsenic is mainly in the arsenate form, and increases with the evaporation process estimated from sodium ion concentrations. The pH of soil solution and surface water increases rapidly during evapo-concentration up to values above 9 or 10, preventing adsorption processes on oxides and clay minerals and promoting the retention of dissolved arsenic in solution. Solutions from organic soil horizons show higher As contents in relation to Na, attributed to the formation of ternary complex As-(Fe/Al)-OM. In this alkaline pH range, despite high levels of dissolved As, soil horizons and lake sediments in contact with these waters show As values that correspond to uncontaminated environments.
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Affiliation(s)
- Larissa Richter
- University of Campinas, Chemistry Institute, Campinas, SP, Brazil
| | | | - Gustavo S Pessôa
- University of Campinas, Chemistry Institute, Campinas, SP, Brazil
| | | | | | | | - Hebert A Menezes
- Federal University of South Mato Grosso (FAENG), Campo Grande, MS, Brazil
| | - Vincent Valles
- Université d'Avignon et des Pays de Vaucluse (UAPV), France
| | - Laurent Barbiero
- University of Campinas, Chemistry Institute, Campinas, SP, Brazil; Institut de Recherche pour le Développement (IRD), GET, Toulouse, France; São Carlos Federal University (UFSCar), Sorocaba, SP, Brazil; São Paulo University (CENA-USP), Piracicaba, SP, Brazil.
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