1
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Zhang X, Zhao B, Zhang Y, Zhang J, Li Y, Zhong J, Diao J, Ma F, Liu H, Duan K. Sources, interactions, influencing factors and ecological risks of microplastics and antibiotic resistance genes in soil: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 949:175226. [PMID: 39098429 DOI: 10.1016/j.scitotenv.2024.175226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 07/13/2024] [Accepted: 07/31/2024] [Indexed: 08/06/2024]
Abstract
Microplastics (MPs) and antibiotic resistance genes (ARGs) are gaining increasing attention as they pose a threat to the ecological environment and human health as emerging contaminants. MPs has been proved to be a hot spot in ARGs, and although it has been extensively studied in water environment, the results of bibliometrics statistical analysis in this paper showed that relevant studies in soil ecological environment are currently in the initial stage. In view of this, the paper provides a systematic review of the sources, interactions, influencing factors, and ecological risks associated with MPs and ARGs in soil environments. Additionally, the mechanism and influencing factors of plastisphere formation and resistance are elaborated in detail. The MPs properties, soil physicochemical properties, soil environmental factors and agricultural activities are the primarily factors affecting the interaction between MPs and ARGs in soil. Challenges and development directions of related research in the future are also prospected. It is hoped that the review could assist in a deeper comprehension and exploration of the interaction mechanism between MPs and ARGs in soil as well as the function of MPs in the transmission process of ARGs among diverse environmental media and organisms, and provide theory basis and reference for the MPs and ARGs pollution control and remediation in soil.
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Affiliation(s)
- Xin Zhang
- School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou 730000, China
| | - Baowei Zhao
- School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou 730000, China.
| | - Yin Zhang
- School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou 730000, China
| | - Jian Zhang
- School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou 730000, China
| | - Yingquan Li
- School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou 730000, China
| | - Jinkui Zhong
- School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou 730000, China
| | - Jingru Diao
- School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou 730000, China
| | - Fengfeng Ma
- School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou 730000, China
| | - Hui Liu
- School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou 730000, China
| | - Kaixiang Duan
- School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou 730000, China
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2
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Philippe A, Salaun M, Quemener M, Noël C, Tallec K, Lacroix C, Coton E, Burgaud G. Colonization and Biodegradation Potential of Fungal Communities on Immersed Polystyrene vs. Biodegradable Plastics: A Time Series Study in a Marina Environment. J Fungi (Basel) 2024; 10:428. [PMID: 38921415 PMCID: PMC11204492 DOI: 10.3390/jof10060428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 05/30/2024] [Accepted: 06/13/2024] [Indexed: 06/27/2024] Open
Abstract
Plastic pollution of the ocean is a major environmental threat. In this context, a better understanding of the microorganisms able to colonize and potentially degrade these pollutants is of interest. This study explores the colonization and biodegradation potential of fungal communities on foamed polystyrene and alternatives biodegradable plastics immersed in a marina environment over time, using the Brest marina (France) as a model site. The methodology involved a combination of high-throughput 18S rRNA gene amplicon sequencing to investigate fungal taxa associated with plastics compared to the surrounding seawater, and a culture-dependent approach to isolate environmentally relevant fungi to further assess their capabilities to utilize polymers as carbon sources. Metabarcoding results highlighted the significant diversity of fungal communities associated with both foamed polystyrene and biodegradable plastics, revealing a dynamic colonization process influenced by the type of polymer and immersion time. Notably, the research suggests a potential for certain fungal species to utilize polymers as a carbon source, emphasizing the need for further exploration of fungal biodegradation potential and mechanisms.
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Affiliation(s)
- Aurélie Philippe
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, F-29280 Plouzané, France; (A.P.); (M.S.); (M.Q.); (E.C.)
| | - Marie Salaun
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, F-29280 Plouzané, France; (A.P.); (M.S.); (M.Q.); (E.C.)
| | - Maxence Quemener
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, F-29280 Plouzané, France; (A.P.); (M.S.); (M.Q.); (E.C.)
| | - Cyril Noël
- Ifremer, IRSI, SeBiMER Service de Bioinformatique de l’Ifremer, F-29280 Plouzané, France;
| | - Kévin Tallec
- CEDRE Centre de Documentation, de Recherche et d’Expérimentations sur les Pollutions Accidentelles des Eaux, 715 Rue Alain Colas, CS 41836, CEDEX 2, 29218 Brest, France; (K.T.); (C.L.)
| | - Camille Lacroix
- CEDRE Centre de Documentation, de Recherche et d’Expérimentations sur les Pollutions Accidentelles des Eaux, 715 Rue Alain Colas, CS 41836, CEDEX 2, 29218 Brest, France; (K.T.); (C.L.)
| | - Emmanuel Coton
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, F-29280 Plouzané, France; (A.P.); (M.S.); (M.Q.); (E.C.)
| | - Gaëtan Burgaud
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, F-29280 Plouzané, France; (A.P.); (M.S.); (M.Q.); (E.C.)
- Institut Universitaire de France, France
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3
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Scales BS, Hassenrück C, Moldaenke L, Hassa J, Rückert-Reed C, Rummel C, Völkner C, Rynek R, Busche T, Kalinowski J, Jahnke A, Schmitt-Jansen M, Wendt-Potthoff K, Oberbeckmann S. Hunting for pigments in bacterial settlers of the Great Pacific Garbage Patch. Environ Microbiol 2024; 26:e16639. [PMID: 38899733 DOI: 10.1111/1462-2920.16639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Accepted: 04/30/2024] [Indexed: 06/21/2024]
Abstract
The Great Pacific Garbage Patch, a significant collection of plastic introduced by human activities, provides an ideal environment to study bacterial lifestyles on plastic substrates. We proposed that bacteria colonizing the floating plastic debris would develop strategies to deal with the ultraviolet-exposed substrate, such as the production of antioxidant pigments. We observed a variety of pigmentation in 67 strains that were directly cultivated from plastic pieces sampled from the Garbage Patch. The genomic analysis of four representative strains, each distinct in taxonomy, revealed multiple pathways for carotenoid production. These pathways include those that produce less common carotenoids and a cluster of photosynthetic genes. This cluster appears to originate from a potentially new species of the Rhodobacteraceae family. This represents the first report of an aerobic anoxygenic photoheterotrophic bacterium from plastic biofilms. Spectral analysis showed that the bacteria actively produce carotenoids, such as beta-carotene and beta-cryptoxanthin, and bacteriochlorophyll a. Furthermore, we discovered that the genetic ability to synthesize carotenoids is more common in plastic biofilms than in the surrounding water communities. Our findings suggest that plastic biofilms could be an overlooked source of bacteria-produced carotenoids, including rare forms. It also suggests that photoreactive molecules might play a crucial role in bacterial biofilm communities in surface water.
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Affiliation(s)
- Brittan S Scales
- Department of Biological Oceanography, Leibniz Institute for Baltic Sea Research Warnemünde, Rostock, Germany
| | - Christiane Hassenrück
- Department of Biological Oceanography, Leibniz Institute for Baltic Sea Research Warnemünde, Rostock, Germany
| | - Lynn Moldaenke
- Department of Biological Oceanography, Leibniz Institute for Baltic Sea Research Warnemünde, Rostock, Germany
- Center for Biotechnology (CeBiTec), Universität Bielefeld, Bielefeld, Germany
| | - Julia Hassa
- Center for Biotechnology (CeBiTec), Universität Bielefeld, Bielefeld, Germany
| | | | - Christoph Rummel
- Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Corinna Völkner
- Helmholtz Centre for Environmental Research - UFZ, Magdeburg, Germany
| | - Robby Rynek
- Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Tobias Busche
- Center for Biotechnology (CeBiTec), Universität Bielefeld, Bielefeld, Germany
| | - Jörn Kalinowski
- Center for Biotechnology (CeBiTec), Universität Bielefeld, Bielefeld, Germany
| | - Annika Jahnke
- Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
- Institute for Environmental Research, RWTH Aachen University, Aachen, Germany
| | | | | | - Sonja Oberbeckmann
- Department of Biological Oceanography, Leibniz Institute for Baltic Sea Research Warnemünde, Rostock, Germany
- Federal Institute for Materials Research and Testing (BAM), Berlin, Germany
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Ebbesen LG, Strange MV, Gunaalan K, Paulsen ML, Herrera A, Nielsen TG, Shashoua Y, Lindegren M, Almeda R. Do weathered microplastics impact the planktonic community? A mesocosm approach in the Baltic Sea. WATER RESEARCH 2024; 255:121500. [PMID: 38554636 DOI: 10.1016/j.watres.2024.121500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 03/18/2024] [Accepted: 03/19/2024] [Indexed: 04/02/2024]
Abstract
Microplastics (MPs) are ubiquitous pollutants of increasing concern in aquatic systems. However, little is still known about the impacts of weathered MPs on plankton at the community level after long-term exposure. In this study, we investigated the effects of weathered MPs on the structure and dynamics of a Baltic Sea planktonic community during ca. 5 weeks of exposure using a mesocosm approach (2 m3) mimicking natural conditions. MPs were obtained from micronized commercial materials of polyvinyl chloride, polypropylene, polystyrene, and polyamide (nylon) previously weathered by thermal ageing and sunlight exposure. The planktonic community was exposed to 2 μg L-1 and 2 mg L-1 of MPs corresponding to measured particle concentrations (10-120 μm) of 680 MPs L-1 and 680 MPs mL-1, respectively. The abundance and composition of all size classes and groups of plankton and chlorophyll concentrations were periodically analyzed throughout the experiment. The population dynamics of the studied groups showed some variations between treatments, with negative and positive effects of MPs exhibited depending on the group and exposure time. The abundance of heterotrophic bacteria, pico- and nanophytoplankton, cryptophytes, and ciliates was lower in the treatment with the higher MP concentration than in the control at the last weeks of the exposure. The chlorophyll concentration and the abundances of heterotrophic nanoflagellates, Astromoeba, dinoflagellate, diatom, and metazooplankton were not negatively affected by the exposure to MPs and, in some cases, some groups showed even higher abundances in the MP treatments. Despite these tendencies, statistical analyses indicate that in most cases there were no statistically significant differences between treatments over the exposure period, even at very high exposure concentrations. Our results show that weathered MPs of the studied conventional plastic materials have minimal or negligible impact on planktonic communities after long-term exposure to environmentally relevant concentrations.
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Affiliation(s)
- Linea Gry Ebbesen
- Department of Environmental Engineering, Technical University of Denmark, Denmark; National Institute of Aquatic Resources (DTU AQUA) Technical University of Denmark, Denmark
| | - Markus Varlund Strange
- Department of Environmental Engineering, Technical University of Denmark, Denmark; National Institute of Aquatic Resources (DTU AQUA) Technical University of Denmark, Denmark
| | - Kuddithamby Gunaalan
- National Institute of Aquatic Resources (DTU AQUA) Technical University of Denmark, Denmark
| | | | - Alicia Herrera
- EOMAR, ECOAQUA, University of Las Palmas de Gran Canaria, Spain
| | - Torkel Gissel Nielsen
- National Institute of Aquatic Resources (DTU AQUA) Technical University of Denmark, Denmark
| | - Yvonne Shashoua
- Environmental Archaeology and Materials Science, National Museum of Denmark, Denmark
| | - Martin Lindegren
- National Institute of Aquatic Resources (DTU AQUA) Technical University of Denmark, Denmark
| | - Rodrigo Almeda
- National Institute of Aquatic Resources (DTU AQUA) Technical University of Denmark, Denmark; EOMAR, ECOAQUA, University of Las Palmas de Gran Canaria, Spain.
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5
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Lazcano RF, Kelly JJ, Hoellein TJ. Biofilms on plastic litter in an urban river: Community composition and activity vary by substrate type. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2024; 96:e11008. [PMID: 38443318 DOI: 10.1002/wer.11008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Revised: 01/23/2024] [Accepted: 02/08/2024] [Indexed: 03/07/2024]
Abstract
In aquatic ecosystems, plastic litter is a substrate for biofilms. Biofilms on plastic and natural surfaces share similar composition and activity, with some differences due to factors such as porosity. In freshwaters, most studies have examined biofilms on benthic substrates, while little research has compared the activity and composition of biofilms on buoyant plastic and natural surfaces. Additionally, the influence of substrate size and successional stage on biofilm composition has not been commonly assessed. We incubated three plastics of distinct textures that are buoyant in rivers, low-density polyethylene (rigid; 1.7 mm thick), low-density polyethylene film (flexible; 0.0254 mm thick), and foamed polystyrene (brittle; 6.5 mm thick), as well as wood substrates (untreated oak veneer; 0.6 mm thick) in the Chicago River. Each material was incubated at three sizes (1, 7.5, and 15 cm2 ). Substrates were incubated at 2-10 cm depths and removed weekly for 6 weeks. On each substrate we measured chlorophyll concentration, biofilm biomass, respiration, and flux of nitrogen gas. We sequenced 16S and 23S rRNA genes at Weeks 1, 3, and 6 to capture biofilm community composition across successional stages. Chlorophyll, biomass, and N2 flux were similar across substrates, but respiration was greater on wood than plastics. Bacterial and algal richness and diversity were highest on foam and wood compared to polyethylene substrates. Bacterial biofilm community composition was distinct between wood and plastic substrates, while the algal community was distinct on wood and foam, which were different from each other and polyethylene substrates. These results indicate that polymer properties influence biofilm alpha and beta diversity, which may affect transport and distribution of plastic pollution and associated microbes, as well as biogeochemical processes in urban rivers. This study provides valuable insights into the effects of substrate on biofilm characteristics, and the ecological impacts of plastic pollution on urban rivers. PRACTITIONER POINTS: Plastic physical and chemical properties act as forces of selection for biofilm. Biofilm activity was similar among three different types of plastic. Community composition between plastic and wood was different.
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Affiliation(s)
- Raúl F Lazcano
- Department of Biology, Loyola University Chicago, Chicago, Illinois, USA
| | - John J Kelly
- Department of Biology, Loyola University Chicago, Chicago, Illinois, USA
| | - Timothy J Hoellein
- Department of Biology, Loyola University Chicago, Chicago, Illinois, USA
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6
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Li S, Kim M, Song YE, Hwan Son S, Kim HI, Jae J, Yan Q, Fei Q, Kim JR. Housing of electrosynthetic biofilms using a roll-up carbon veil electrode increases CO 2 conversion and faradaic efficiency in microbial electrosynthesis cells. BIORESOURCE TECHNOLOGY 2024; 393:130157. [PMID: 38065517 DOI: 10.1016/j.biortech.2023.130157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2023] [Revised: 12/02/2023] [Accepted: 12/02/2023] [Indexed: 01/18/2024]
Abstract
Electrode-driven microbial electron transfer enables the conversion of CO2 into multi-carbon compounds. The electrosynthetic biofilms grow slowly on the surface and are highly susceptible to operational influences, such as hydrodynamic shear stress. In this study, a cylindrical roll-up carbon felt electrode was developed as a novel strategy to protect biofilms from shear stress within the reactor. The fabricated electrode allowed hydrogen bubble formation inside the structure, which enabled microbes to uptake hydrogen and convert CO2 to multi-carbon organic compounds. The roll-up electrode exhibited faster start-up and biofilm formation than the conventional linear shape carbon felt. The acetate yield and cathodic faradaic efficiency increased by 80% and 34%, respectively, and the bioelectrochemical stability was improved significantly. The roll-up structure increased biofilm development per unit electrode surface by three to five-fold. The roll-up configuration improved biofilm formation on the electrode, which enhanced the performance of microbial electrosynthesis-based CO2 valorization.
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Affiliation(s)
- Shuwei Li
- School of Chemical Engineering, Pusan National University, Busan 46241, Republic of Korea; School of Chemical Engineering and Technology, Xi'an Jiaotong University, Xi'an, China; Department of Gastroenterology, First Affiliated Hospital of Xi'an Jiaotong University, 277 West Yanta Road, Xi'an, Shanxi 710061, China
| | - Minsoo Kim
- School of Chemical Engineering, Pusan National University, Busan 46241, Republic of Korea
| | - Young Eun Song
- Advanced Biofuel and Bioproducts Process Development Unit, Lawrence Berkeley National Laboratory, Emeryville, CA 94608, USA
| | - Sang Hwan Son
- School of Chemical Engineering, Pusan National University, Busan 46241, Republic of Korea
| | - Hyoung-Il Kim
- School of Civil & Environmental Engineering, Yonsei University, Seoul 03722, Republic of Korea
| | - Jungho Jae
- School of Chemical Engineering, Pusan National University, Busan 46241, Republic of Korea
| | - Qun Yan
- School of Environmental and Civil Engineering, Jiangnan University, Wuxi 214122, China
| | - Qiang Fei
- School of Chemical Engineering and Technology, Xi'an Jiaotong University, Xi'an, China
| | - Jung Rae Kim
- School of Chemical Engineering, Pusan National University, Busan 46241, Republic of Korea.
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7
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Stevenson EM, Buckling A, Cole M, Lindeque PK, Murray AK. Selection for antimicrobial resistance in the plastisphere. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 908:168234. [PMID: 37924893 DOI: 10.1016/j.scitotenv.2023.168234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 10/20/2023] [Accepted: 10/29/2023] [Indexed: 11/06/2023]
Abstract
Microplastics and antimicrobials are widespread contaminants that threaten global systems and frequently co-exist in the presence of human or animal pathogens. Whilst the impact of each of these contaminants has been studied in isolation, the influence of this co-occurrence in driving antimicrobial resistance (AMR)1 in microplastic-adhered microbial communities, known as 'the Plastisphere', is not well understood. This review proposes the mechanisms by which interactions between antimicrobials and microplastics may drive selection for AMR in the Plastisphere. These include: 1) increased rates of horizontal gene transfer in the Plastisphere compared with free-living counterparts and natural substrate controls due to the proximity of cells, co-occurrence of environmental microplastics with AMR selective compounds and the sequestering of extracellular antibiotic resistance genes in the biofilm matrix. 2) An elevated AMR selection pressure in the Plastisphere due to the adsorbing of AMR selective or co-selective compounds to microplastics at concentrations greater than those found in surrounding mediums and potentially those adsorbed to comparator particles. 3) AMR selection pressure may be further elevated in the Plastisphere due to the incorporation of antimicrobial or AMR co-selective chemicals in the plastic matrix during manufacture. Implications for both ecological functioning and environmental risk assessments are discussed, alongside recommendations for further research.
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Affiliation(s)
- Emily M Stevenson
- European Centre for Environment and Human Health, Environment and Sustainability Institute, University of Exeter Medical School, Faculty of Health and Life Sciences, Penryn Campus, Cornwall, UK; Marine Ecology & Biodiversity, Plymouth Marine Laboratory, Prospect Place, West Hoe, Plymouth PL1 3DH, UK; Faculty of Environment, Science and Economy, University of Exeter, Penryn Campus, Cornwall TR10 9FE, UK
| | - Angus Buckling
- Faculty of Environment, Science and Economy, University of Exeter, Penryn Campus, Cornwall TR10 9FE, UK
| | - Matthew Cole
- Marine Ecology & Biodiversity, Plymouth Marine Laboratory, Prospect Place, West Hoe, Plymouth PL1 3DH, UK
| | - Penelope K Lindeque
- Marine Ecology & Biodiversity, Plymouth Marine Laboratory, Prospect Place, West Hoe, Plymouth PL1 3DH, UK; Faculty of Environment, Science and Economy, University of Exeter, Penryn Campus, Cornwall TR10 9FE, UK
| | - Aimee K Murray
- European Centre for Environment and Human Health, Environment and Sustainability Institute, University of Exeter Medical School, Faculty of Health and Life Sciences, Penryn Campus, Cornwall, UK.
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8
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Sun Y, Mazzotta MG, Miller CA, Apprill A, Izallalen M, Mazumder S, Perri ST, Edwards B, Reddy CM, Ward CP. Distinct microbial communities degrade cellulose diacetate bioplastics in the coastal ocean. Appl Environ Microbiol 2023; 89:e0165123. [PMID: 38054734 PMCID: PMC10734458 DOI: 10.1128/aem.01651-23] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Accepted: 10/23/2023] [Indexed: 12/07/2023] Open
Abstract
IMPORTANCE Cellulose diacetate (CDA) is a promising alternative to conventional plastics due to its versatility in manufacturing and low environmental persistence. Previously, our group demonstrated that CDA is susceptible to biodegradation in the ocean on timescales of months. In this study, we report the composition of microorganisms driving CDA degradation in the coastal ocean. We found that the coastal ocean harbors distinct bacterial taxa implicated in CDA degradation and these taxa have not been previously identified in prior CDA degradation studies, indicating an unexplored diversity of CDA-degrading bacteria in the ocean. Moreover, the shape of the plastic article (e.g., a fabric, film, or foam) and plasticizer in the plastic matrix selected for different microbial communities. Our findings pave the way for future studies to identify the specific species and enzymes that drive CDA degradation in the marine environment, ultimately yielding a more predictive understanding of CDA biodegradation across space and time.
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Affiliation(s)
- Yanchen Sun
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | | | - Carolyn A. Miller
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | - Amy Apprill
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | | | | | | | | | - Christopher M. Reddy
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | - Collin P. Ward
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
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9
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Bos RP, Kaul D, Zettler ER, Hoffman JM, Dupont CL, Amaral-Zettler LA, Mincer TJ. Plastics select for distinct early colonizing microbial populations with reproducible traits across environmental gradients. Environ Microbiol 2023; 25:2761-2775. [PMID: 37132662 DOI: 10.1111/1462-2920.16391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 04/19/2023] [Indexed: 05/04/2023]
Abstract
Little is known about early plastic biofilm assemblage dynamics and successional changes over time. By incubating virgin microplastics along oceanic transects and comparing adhered microbial communities with those of naturally occurring plastic litter at the same locations, we constructed gene catalogues to contrast the metabolic differences between early and mature biofilm communities. Early colonization incubations were reproducibly dominated by Alteromonadaceae and harboured significantly higher proportions of genes associated with adhesion, biofilm formation, chemotaxis, hydrocarbon degradation and motility. Comparative genomic analyses among the Alteromonadaceae metagenome assembled genomes (MAGs) highlighted the importance of the mannose-sensitive hemagglutinin (MSHA) operon, recognized as a key factor for intestinal colonization, for early colonization of hydrophobic plastic surfaces. Synteny alignments of MSHA also demonstrated positive selection for mshA alleles across all MAGs, suggesting that mshA provides a competitive advantage for surface colonization and nutrient acquisition. Large-scale genomic characteristics of early colonizers varied little, despite environmental variability. Mature plastic biofilms were composed of predominantly Rhodobacteraceae and displayed significantly higher proportions of carbohydrate hydrolysis enzymes and genes for photosynthesis and secondary metabolism. Our metagenomic analyses provide insight into early biofilm formation on plastics in the ocean and how early colonizers self-assemble, compared to mature, phylogenetically and metabolically diverse biofilms.
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Affiliation(s)
- Ryan P Bos
- Harbor Branch Oceanographic Institute, Florida Atlantic University, Fort Pierce, Florida, USA
| | - Drishti Kaul
- Environmental Sustainability, J. Craig Venter Institute, La Jolla, California, USA
| | - Erik R Zettler
- Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, Texel, The Netherlands
| | - Jeffrey M Hoffman
- Environmental Sustainability, J. Craig Venter Institute, La Jolla, California, USA
| | - Christopher L Dupont
- Environmental Sustainability, J. Craig Venter Institute, La Jolla, California, USA
| | - Linda A Amaral-Zettler
- Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, Texel, The Netherlands
- Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
- Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, Massachusetts, USA
| | - Tracy J Mincer
- Harbor Branch Oceanographic Institute, Florida Atlantic University, Fort Pierce, Florida, USA
- Department of Biology, Wilkes Honors College, Florida Atlantic University, Jupiter, Florida, USA
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10
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Dudek KL, Neuer S. Environmental exposure more than plastic composition shapes marine microplastic-associated bacterial communities in Pacific versus Caribbean field incubations. Environ Microbiol 2023; 25:2807-2821. [PMID: 37899673 DOI: 10.1111/1462-2920.16519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Accepted: 09/28/2023] [Indexed: 10/31/2023]
Abstract
Microplastics have arisen as a global threat to marine ecosystems. In this study, we explored the role that plastic polymer type, incubation time and geographic location have on shaping the microbial community adhered to the microplastics, termed the plastisphere. We performed detailed bacterial plastisphere community analyses on microplastics of six different household plastic polymers, serving as proxies of secondary microplastics, incubated for 6 weeks in coastal Pacific waters. These bacterial communities were compared to the plastisphere communities grown on identical microplastic particles incubated in the coastal Caribbean Sea at Bocas del Toro, Panama. Ribosomal gene sequencing analyses revealed that bacterial community composition did not exhibit a significant preference for plastic type at either site but was instead driven by the incubation time and geographic location. We identified a 'core plastisphere' composed of 57 amplicon sequence variants common to all plastic types, incubation times and locations, with possible synergies between taxa. This study contributes to our understanding of the importance of geography in addition to exposure time, in the composition of the plastisphere.
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Affiliation(s)
- Kassandra L Dudek
- School of Life Sciences and Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, Arizona, USA
| | - Susanne Neuer
- School of Life Sciences and Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, Arizona, USA
- School of Ocean Futures, Arizona State University, Tempe, Arizona, USA
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11
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Yang Y, Suyamud B, Liang S, Liang X, Wan W, Zhang W. Distinct spatiotemporal succession of bacterial generalists and specialists in the lacustrine plastisphere. Environ Microbiol 2023; 25:2746-2760. [PMID: 37190986 DOI: 10.1111/1462-2920.16400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Accepted: 05/02/2023] [Indexed: 05/17/2023]
Abstract
The assembly processes of generalists and specialists and their driving mechanisms during spatiotemporal succession is a central issue in microbial ecology but a poorly researched subject in the plastisphere. We investigated the composition variation, spatiotemporal succession, and assembly processes of bacterial generalists and specialists in the plastisphere, including non-biodegradable (NBMPs) and biodegradable microplastics (BMPs). Although the composition of generalists and specialists on NBMPs differed from that of BMPs, colonization time mainly mediated the composition variation. The relative abundance of generalists and the relative contribution of species replacement were initially increased and then decreased with colonization time, while the specialists initially decreased and then increased. Besides, the richness differences also affected the composition variation of generalists and specialists in the plastisphere, and the generalists were more susceptible to richness differences than corresponding specialists. Furthermore, the assembly of generalists in the plastisphere was dominated by deterministic processes, while stochastic processes dominated the assembly of specialists. The network stability test showed that the community stability of generalists on NBMPs and BMPs was lower than corresponding specialists. Our results suggested that different ecological assembly processes shaped the spatiotemporal succession of bacterial generalists and specialists in the plastisphere, but were less influenced by polymer types.
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Affiliation(s)
- Yuyi Yang
- State Key Laboratory of Water Resources and Hydropower Engineering Science, Wuhan University, Wuhan, China
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China
- University of Chinese Academy of Sciences, Beijing, China
- Danjiangkou Wetland Ecosystem Field Scientific Observation and Research Station, Chinese Academy of Sciences & Hubei Province, Wuhan, China
| | - Bongkotrat Suyamud
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China
- NUS Environmental Research Institute, National University of Singapore, Singapore, Singapore
| | - Shuxin Liang
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China
- College of Science, Tibet University, Lhasa, China
| | - Xinjin Liang
- School of Mechanical and Aerospace Engineering, Queen's University Belfast, Belfast, UK
| | - Wenjie Wan
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China
- University of Chinese Academy of Sciences, Beijing, China
- Danjiangkou Wetland Ecosystem Field Scientific Observation and Research Station, Chinese Academy of Sciences & Hubei Province, Wuhan, China
| | - Weihong Zhang
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China
- University of Chinese Academy of Sciences, Beijing, China
- Danjiangkou Wetland Ecosystem Field Scientific Observation and Research Station, Chinese Academy of Sciences & Hubei Province, Wuhan, China
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12
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Mittal N, Tiwari N, Singh D, Tripathi P, Sharma S. Toxicological impacts of microplastics on human health: a bibliometric analysis. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023:10.1007/s11356-023-30801-4. [PMID: 37936032 DOI: 10.1007/s11356-023-30801-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2023] [Accepted: 10/27/2023] [Indexed: 11/09/2023]
Abstract
Plastic has been known as an artificial polymer whereas environmental microplastics become a global concern. Microplastics are reported to cause immunotoxicity in humans through gut deposition and entering the bloodstream. This study is a comprehensive indication of the recent research on microplastic toxicity in the gastrointestinal system. We performed bibliographic analysis using VOS viewer software and analyzed the data received on microplastics and their impact on gut health which has grown exponentially since 2016. Recent findings also support microplastic toxicity in combination with heavy metals. The smaller particle size and other factors enhanced the adsorption ability of environmental contamination such as heavy metals on microplastic which increased their bioaccumulation. Such toxic complexes of heavy metals and microplastics are a concern to natural ecosystems and environmental biologists. Few reports also demonstrated the biofilm formation on microplastic surfaces which might cause greater environmental as well as human health risks. Notably, terms of determining the microplastics in human tissues through several analytical techniques are still limited to some extent. Future research should be focused on the quantification of microplastics in human tissues, the combined effect of microplastics with other contaminants, and their effects on pre-existing diseases. This study boosts understanding of the potential impacts of microplastic and nanoplastic toxicity in the human gastrointestinal system.
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Affiliation(s)
- Nishu Mittal
- Faculty of Biosciences, Institute of Biosciences and Technology, Shri RamSwaroop Memorial University, Deva Road, Barabanki, Lucknow, Uttar Pradesh, 225003, India
| | - Neeraj Tiwari
- Faculty of Biosciences, Institute of Biosciences and Technology, Shri RamSwaroop Memorial University, Deva Road, Barabanki, Lucknow, Uttar Pradesh, 225003, India
| | - Dhananjay Singh
- Department of Biosciences, Integral University, Kursi Road, Lucknow, Uttar Pradesh, 226026, India
| | - Prabhanshu Tripathi
- Food Drug and Chemical Toxicology Division, CSIR-Indian Institute of Toxicology Research, Lucknow, Uttar Pradesh, 226001, India
| | - Sapna Sharma
- Faculty of Biosciences, Institute of Biosciences and Technology, Shri RamSwaroop Memorial University, Deva Road, Barabanki, Lucknow, Uttar Pradesh, 225003, India.
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13
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Vrinda PK, Amal R, Abhirami N, Mini DA, Kumar VJR, Devipriya SP. Co-exposure of microplastics and heavy metals in the marine environment and remediation techniques: a comprehensive review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:114822-114843. [PMID: 37922080 DOI: 10.1007/s11356-023-30679-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 10/21/2023] [Indexed: 11/05/2023]
Abstract
Microplastics (MPs) and heavy metals are significant pollutants in the marine environment, necessitating effective remediation strategies to prevent their release into the sea through sewage and industrial effluent. This comprehensive review explores the current understanding of the co-exposure of MPs and heavy metal-enriched MPs, highlighting the need for effective remediation methods. Various mechanisms, including surface ion complexation, hydrogen bonding, and electrostatic forces, contribute to the adsorption of heavy metals onto MPs, with factors like surface area and environmental exposure duration playing crucial roles. Additionally, biofilm formation on MPs alters their chemical properties, influencing metal adsorption behaviors. Different thermodynamic models are used to explain the adsorption mechanisms of heavy metals on MPs. The adsorption process is influenced by various factors, including the morphological characteristics of MPs, their adsorption capacity, and environmental conditions. Additionally, the desorption of heavy metals from MPs has implications for their bioavailability and poses risks to marine organisms, emphasizing the importance of source reduction and remedial measures. Hybrid approaches that combine both conventional and modern technologies show promise for the efficient removal of MPs and heavy metals from marine environments. This review identifies critical gaps in existing research that should be addressed in future studies including standardized sampling methods to ensure accurate data, further investigation into the specific interactions between MPs and metals, and the development of hybrid technologies at an industrial scale. Overall, this review sheds light on the adsorption and desorption mechanisms of heavy metal-enriched MPs, underscoring the necessity of implementing effective remediation strategies.
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Affiliation(s)
- Punmoth Kalyadan Vrinda
- Department of Ocean Studies and Marine Biology, Pondicherry University, Port Blair, 744112, Andaman and Nicobar Islands, India
| | - Radhakrishnan Amal
- School of Environmental Studies, Cochin University of Science and Technology, Kochi, India, 682022
| | - Nandakumar Abhirami
- Department of Aquatic Environment Management, Central Institute of Fisheries Education, Versova, Mumbai, Maharashtra, 400061, India
| | - Divya Alex Mini
- Department of Aquatic Environment Management, Kerala University of Fisheries and Ocean Studies, Panangad, Kochi, 682508, Kerala, India
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14
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Xu X, Wang S, Li C, Li J, Gao F, Zheng L. Quorum sensing bacteria in microplastics epiphytic biofilms and their biological characteristics which potentially impact marine ecosystem. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 264:115444. [PMID: 37690175 DOI: 10.1016/j.ecoenv.2023.115444] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2023] [Revised: 08/24/2023] [Accepted: 09/03/2023] [Indexed: 09/12/2023]
Abstract
Microplastics (MPs) have been shown to be a new type of pollutant in the oceans, with complex biofilms attached to their surfaces. Bacteria with quorum sensing (QS) systems are important participants in biofilms. Such bacteria can secrete and detect signal molecules. When a signal molecule reaches its threshold level, bacteria with QS systems can perform several biological functions, such as biofilm formation and antibiotic metabolite production. However, the ecological effects of QS bacteria in biofilm as MPs distribute globally with ocean currents are not to be elucidate yet. In this study, polypropylene and polyvinyl chloride were selected for on-site enrichment to acquire microplastics with biofilms. Eight culturable QS bacteria in the resulting biofilm were isolated by using biosensor assays, and their biodiversity was analyzed. The profiles of the N-acyl-homoserine lactones (AHLs) produced by these bacteria were analyzed by using thin-layer chromatography (TLC)-bioautography and gas chromatography and mass spectrometry (GC-MS). Biofilm-forming properties and several biological characteristics, such as bacteriostasis, algal inhibition, and dimethylsulfoniopropionate (DMSP) degradation, were explored along with QS quenching. Results showed that QS bacteria were mainly affiliated with class Alphaproteobacteria, particularly Rhodobacteraceae, followed by class Gammaproteobacteria. TLC-bioautography and GC-MS analyses revealed that seven AHLs, namely, C6-HSL, C8-HSL, 3-oxo-C6-HSL, 3-oxo-C8-HSL, 3-oxo-C10-HSL, and two unidentified AHLs were produced. The QS system equipped bacteria with strong biofilm-forming capacity and may contribute to the keystone roles of Rhodobacteraceae. In addition, QS bacteria may exacerbate the adverse environmental effects of MPs, such as inducing the misfeeding of planktons on MPs. This study elucidated the diversity of QS bacteria in MP-associated biofilms and provided a new perspective of the effect of key membrane-forming bacteria on the marine ecological environment.
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Affiliation(s)
- Xiyuan Xu
- Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China
| | - Shuai Wang
- Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China
| | - Chengxuan Li
- Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China
| | - Jingxi Li
- Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China
| | - Fenglei Gao
- Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education, Ocean University of China, Qingdao 266100, China
| | - Li Zheng
- Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China; Laboratory of Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology (Qingdao), Qingdao 266237, China.
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15
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Zhong H, Wu M, Sonne C, Lam SS, Kwong RW, Jiang Y, Zhao X, Sun X, Zhang X, Li C, Li Y, Qu G, Jiang F, Shi H, Ji R, Ren H. The hidden risk of microplastic-associated pathogens in aquatic environments. ECO-ENVIRONMENT & HEALTH 2023; 2:142-151. [PMID: 38074987 PMCID: PMC10702891 DOI: 10.1016/j.eehl.2023.07.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Revised: 07/01/2023] [Accepted: 07/10/2023] [Indexed: 06/16/2024]
Abstract
Increasing studies of plastisphere have raised public concern about microplastics (MPs) as vectors for pathogens, especially in aquatic environments. However, the extent to which pathogens affect human health through MPs remains unclear, as controversies persist regarding the distinct pathogen colonization on MPs as well as the transmission routes and infection probability of MP-associated pathogens from water to humans. In this review, we critically discuss whether and how pathogens approach humans via MPs, shedding light on the potential health risks involved. Drawing on cutting-edge multidisciplinary research, we show that some MPs may facilitate the growth and long-range transmission of specific pathogens in aquatic environments, ultimately increasing the risk of infection in humans. We identify MP- and pathogen-rich settings, such as wastewater treatment plants, aquaculture farms, and swimming pools, as possible sites for human exposure to MP-associated pathogens. This review emphasizes the need for further research and targeted interventions to better understand and mitigate the potential health risks associated with MP-mediated pathogen transmission.
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Affiliation(s)
- Huan Zhong
- School of Environment, Nanjing University, State Key Laboratory of Pollution Control and Resource Reuse, Nanjing 210023, China
| | - Mengjie Wu
- School of Environment, Nanjing University, State Key Laboratory of Pollution Control and Resource Reuse, Nanjing 210023, China
| | - Christian Sonne
- Department of Bioscience, Arctic Research Centre, Aarhus University, Roskilde, Denmark
| | - Su Shiung Lam
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries (AKUATROP), Universiti Malaysia Terengganu, 21030 Kuala Nerus, Terengganu, Malaysia
- University Centre for Research and Development, Department of Chemistry, Chandigarh University, Gharuan, Mohali, Punjab, India
| | - Raymond W.M. Kwong
- Department of Biology, York University, 4700 Keele Street, Toronto, ON M3J 1P3, Canada
| | - Yuelu Jiang
- Tsinghua Shenzhen International Graduate School, Shenzhen 518055, China
| | - Xiaoli Zhao
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Xuemei Sun
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China
| | - Xuxiang Zhang
- School of Environment, Nanjing University, State Key Laboratory of Pollution Control and Resource Reuse, Nanjing 210023, China
| | - Chengjun Li
- Institute of Environmental Research at Greater Bay Area, Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, Guangzhou University, Guangzhou 510006, China
| | - Yuanyuan Li
- Key Laboratory of Environment and Health (HUST), Ministry of Education & Ministry of Environmental Protection, and State Key Laboratory of Environmental Health (Incubation), School of Public Health, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China
| | - Guangbo Qu
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Feng Jiang
- School of Environmental Science and Engineering, Guangdong Provincial Key Lab of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, China
| | - Huahong Shi
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Rong Ji
- School of Environment, Nanjing University, State Key Laboratory of Pollution Control and Resource Reuse, Nanjing 210023, China
| | - Hongqiang Ren
- School of Environment, Nanjing University, State Key Laboratory of Pollution Control and Resource Reuse, Nanjing 210023, China
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16
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Naudet J, d'Orbcastel ER, Bouvier T, Godreuil S, Dyall S, Bouvy S, Rieuvilleneuve F, Restrepo-Ortiz CX, Bettarel Y, Auguet JC. Identifying macroplastic pathobiomes and antibiotic resistance in a subtropical fish farm. MARINE POLLUTION BULLETIN 2023; 194:115267. [PMID: 37487429 DOI: 10.1016/j.marpolbul.2023.115267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 06/21/2023] [Accepted: 07/04/2023] [Indexed: 07/26/2023]
Abstract
Macroplastics are ubiquitous in aquaculture ecosystems. However, to date the potential role of plastics as a support for bacterial biofilm that can include potential human pathogenic bacteria (PHPB) and antibiotic-resistant bacteria (ARB) has been largely overlooked. In this study, we used a combination of metabarcoding and standard antibiotic susceptibility testing to study the pathobiome and resistome of macroplastics, fish guts and the environment in a marine aquaculture farm in Mauritius. Aquaculture macroplastics were found to be higher in PHPB, dominated by the Vibrionaceae family (0.34 % of the total community), compared with environmental samples. Moreover, isolates from aquaculture plastics showed higher significant multiple antibiotic resistance (MAR) compared to non-plastic samples of seawater, sediment and fish guts. These results suggest that plastics act as a reservoir and fomite of PHPB and ARB in aquaculture, potentially threatening the health of farmed fish and human consumers.
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Affiliation(s)
- Jeanne Naudet
- UMR MARBEC, Univ Montpellier, CNRS, Ifremer, IRD, Montpellier, France.
| | - Emmanuelle Roque d'Orbcastel
- UMR MARBEC, Univ Montpellier, CNRS, Ifremer, IRD, Sète, France; IOC, Indian Ocean Commission, Blue Tower, Rue de l'Institut, Ebène, Mauritius
| | - Thierry Bouvier
- UMR MARBEC, Univ Montpellier, CNRS, Ifremer, IRD, Montpellier, France
| | - Sylvain Godreuil
- UMR MIVEGEC IRD-CNRS-Université de Montpellier, IRD, Montpellier, France
| | - Sabrina Dyall
- Molecular Life Sciences Pole of Research Excellence, Department of Biosciences and Ocean Studies, Faculty of Science, University of Mauritius, Réduit 80837, Mauritius
| | - Simon Bouvy
- Ferme Marine de Mahébourg Ltd. Royal Road, Pointe aux Feuilles, Mauritius
| | | | | | - Yvan Bettarel
- UMR MARBEC, Univ Montpellier, CNRS, Ifremer, IRD, Montpellier, France
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17
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Qin P, Cui H, Li P, Wang S, Fan S, Lu J, Sun M, Zhang H, Wang S, Su X, Fu H, Hu X, Lin J, Zhang Y, Ding W, Zhang W. Early stage of biofilm assembly on microplastics is structured by substrate size and bacterial motility. IMETA 2023; 2:e121. [PMID: 38867926 PMCID: PMC10989967 DOI: 10.1002/imt2.121] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 05/07/2023] [Accepted: 05/16/2023] [Indexed: 06/14/2024]
Abstract
The taxonomic structure of biofilms on 0.3-mm microplastics differed significantly from that on 3-mm microplastics or glass particles. Compared with the 3-mm microplastics, biofilms on 0.3-mm microplastics were enriched for genes involved in flagellar-based motility and chemotaxis, pointing to a more 'mobile' community. The association between motility and bacterial colonization of 0.3-mm microplastics was observed through laboratory experiments using isolated strains.
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Affiliation(s)
- Peng Qin
- Institute of Evolution & Marine BiodiversityOcean University of ChinaQingdaoChina
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
| | - Han Cui
- Institute of Evolution & Marine BiodiversityOcean University of ChinaQingdaoChina
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
| | - Panxin Li
- College of Life SciencesYan'an UniversityYan'anChina
| | - Shuaitao Wang
- Institute of Evolution & Marine BiodiversityOcean University of ChinaQingdaoChina
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
| | - Shen Fan
- Institute of Evolution & Marine BiodiversityOcean University of ChinaQingdaoChina
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
| | - Jie Lu
- Institute of Evolution & Marine BiodiversityOcean University of ChinaQingdaoChina
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
| | - Meng Sun
- Institute of Evolution & Marine BiodiversityOcean University of ChinaQingdaoChina
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
| | - Heng Zhang
- Institute of Evolution & Marine BiodiversityOcean University of ChinaQingdaoChina
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
| | - Shougang Wang
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
- MOE Key Laboratory of Marine Genetics and BreedingOcean University of ChinaQingdaoChina
| | - Xiaoyan Su
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of ChinaQingdaoChina
| | - Hui‐Hui Fu
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of ChinaQingdaoChina
| | - Xiaoli Hu
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
- MOE Key Laboratory of Marine Genetics and BreedingOcean University of ChinaQingdaoChina
| | - Jinshui Lin
- College of Life SciencesYan'an UniversityYan'anChina
| | - Yu‐Zhong Zhang
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of ChinaQingdaoChina
- State Key Laboratory of Microbial TechnologyShandong UniversityQingdaoChina
| | - Wei Ding
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
- MOE Key Laboratory of Marine Genetics and BreedingOcean University of ChinaQingdaoChina
| | - Weipeng Zhang
- Institute of Evolution & Marine BiodiversityOcean University of ChinaQingdaoChina
- College of Marine Life SciencesOcean University of ChinaQingdaoChina
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18
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Su Y, Gao L, Peng L, Diao X, Lin S, Bao R, Mehmood T. Heterogeneous aggregation between microplastics and microalgae: May provide new insights for microplastics removal. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2023; 261:106638. [PMID: 37517318 DOI: 10.1016/j.aquatox.2023.106638] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 07/20/2023] [Accepted: 07/22/2023] [Indexed: 08/01/2023]
Abstract
Existing studies have shown that microplastics (MPs) as artificial surfaces can be colonized by plankton microorganisms. However, systematic research on exploring the aggregation formation process of MPs and microalgae is still lacking and particularly the influencing factors of aggregation remain to be elucidated. Therefore, this study investigated the heterogeneous aggregation process between various microalgal species (i.e., Chlorella vulgaris, Scenedesmus obliquus, Tetraselmis subcordiformis, Chaetoceros müelleri and Streptococcus westermani) and MPs (i.e., mPS and mPLA) with different sizes (i.e., 74 μm and 613 μm), concentrations (i.e., 0.1 g/L, 1 g/L and 2 g/L) and shapes (i.e., the particle and sheet). The results showed that microalgae can first attach to the holes or protrusions of MPs and highly accumulate in the local region, and then multi-layer aggregation can be formed subsequently. The aggregation degree between MPs and microalgae was closely related to the MPs shape and size, and was less related to the MPs concentration. The aggregation speed of small-sized MPs (e.g., 74 μm) was faster than the large-sized ones (e.g., 613 μm). The MPs in a shape of sheet were more obvious than those in particle on their aggregation with microalgae. The density of aggregates was increased compared with pristine MPs, which is related to the cell density and cell number of attached microalgae. For the same type of MPs, the aggregation degree for the tested microalgae was as follows: Scenedesmus obliquus > C. vulgaris > T. subcordiformis > C. müelleri > S. westermani. Meanwhile, MPs inhibited cell growth of microalgae, particularly under the circumstance of their aggregation, by limiting the gas and mass transfer between microalgal cells and the extracellular environment. The heterogeneous aggregation of MPs and microalgae may provide new ideas for treatment and controlling of MPs in the environment.
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Affiliation(s)
- Yuanyuan Su
- Key Laboratory of Agro-Forestry Environmental Processes and Ecological Regulation of Hainan Province, Center for Eco-Environment Restoration Engineering of Hainan Province, Hainan University, Haikou 570228, China; College of Ecology and Environment, Hainan University, Haikou 570228, China; State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou 570228, China
| | - Liu Gao
- Key Laboratory of Agro-Forestry Environmental Processes and Ecological Regulation of Hainan Province, Center for Eco-Environment Restoration Engineering of Hainan Province, Hainan University, Haikou 570228, China; College of Ecology and Environment, Hainan University, Haikou 570228, China
| | - Licheng Peng
- Key Laboratory of Agro-Forestry Environmental Processes and Ecological Regulation of Hainan Province, Center for Eco-Environment Restoration Engineering of Hainan Province, Hainan University, Haikou 570228, China; College of Ecology and Environment, Hainan University, Haikou 570228, China.
| | - Xiaoping Diao
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou 570228, China.
| | - Shengyou Lin
- Key Laboratory of Agro-Forestry Environmental Processes and Ecological Regulation of Hainan Province, Center for Eco-Environment Restoration Engineering of Hainan Province, Hainan University, Haikou 570228, China; College of Ecology and Environment, Hainan University, Haikou 570228, China
| | - Ruiqi Bao
- Key Laboratory of Agro-Forestry Environmental Processes and Ecological Regulation of Hainan Province, Center for Eco-Environment Restoration Engineering of Hainan Province, Hainan University, Haikou 570228, China; College of Ecology and Environment, Hainan University, Haikou 570228, China
| | - Tariq Mehmood
- Key Laboratory of Agro-Forestry Environmental Processes and Ecological Regulation of Hainan Province, Center for Eco-Environment Restoration Engineering of Hainan Province, Hainan University, Haikou 570228, China; College of Ecology and Environment, Hainan University, Haikou 570228, China
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19
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Sun C, Teng J, Wang D, Zhao J, Shan E, Wang Q. The adverse impact of microplastics and their attached pathogen on hemocyte function and antioxidative response in the mussel Mytilus galloprovincialis. CHEMOSPHERE 2023; 325:138381. [PMID: 36907490 DOI: 10.1016/j.chemosphere.2023.138381] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 02/21/2023] [Accepted: 03/09/2023] [Indexed: 06/18/2023]
Abstract
Microplastics (MPs) are widely distributed in marine environments, and they are easily attached by various microorganisms, including pathogenic bacteria. When bivalves mistakenly eat MPs, pathogenic bacteria attached to MPs enter their bodies through the Trojan horse effect, causing adverse effects. In this study, the mussel Mytilus galloprovincialis was exposed to aged polymethylmethacrylate MPs (PMMA-MPs, 20 μm) and Vibrio parahaemolyticus attached to PMMA-MPs to explore the effect of synergistic exposure by measuring lysosomal membrane stability, ROS content, phagocytosis, apoptosis in hemocytes, antioxidative enzyme activities and apoptosis-related gene expression in gills and digestive glands. The results showed that MP exposure alone did not cause significant oxidative stress in mussels, but after long-term coexposure to MPs and V. parahaemolyticus, the activities of antioxidant enzymes were significantly inhibited in the gills of mussels. Both single MP exposure and coexposure will affect hemocyte function. Coexposure can induce hemocytes to produce higher ROS, improve phagocytosis, significantly reduce the stability of the lysosome membrane, and induce the expression of apoptosis-related genes, causing apoptosis of hemocytes compared with single MP exposure. Our results demonstrate that MPs attached to pathogenic bacteria have stronger toxic effects on mussels, which also suggests that MPs with pathogenic bacteria might have an influence on the immune system and cause disease in mollusks. Thus, MPs may mediate the transmission of pathogens in marine environments, posing a threat to marine animals and human health. This study provides a scientific basis for the ecological risk assessment of MP pollution in marine environments.
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Affiliation(s)
- Chaofan Sun
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Jia Teng
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Dongyu Wang
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Jianmin Zhao
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China
| | - Encui Shan
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; University of Chinese Academy of Sciences, Beijing, 100049, PR China
| | - Qing Wang
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China; Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, PR China.
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20
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Williams M, Shamsi S, Williams T, Hernandez-Jover M. Bacteria of Zoonotic Interest Identified on Edible Freshwater Fish Imported to Australia. Foods 2023; 12:foods12061288. [PMID: 36981215 PMCID: PMC10048124 DOI: 10.3390/foods12061288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 03/06/2023] [Accepted: 03/10/2023] [Indexed: 03/22/2023] Open
Abstract
Previous research has shown that freshwater edible fish imported into Australia are not compliant with Australian importation guidelines and as a result may be high risk for bacterial contamination. In the present study, the outer surface of imported freshwater fish were swabbed, cultured, confirmatory tests performed and antimicrobial patterns investigated. Channidae fish (Sp. A/n = 66) were contaminated with zoonotic Salmonella sp./Staphylococcus aureus (n = 1/66) and other bacteria implicated in cases of opportunistic human infection, these being Pseudomonas sp. (including P. mendocina and P. pseudoalcaligenes (n = 34/66)); Micrococcus sp. (n = 32/66); Comamonas testosteroni (n = 27/66) and Rhizobium radiobacter (n = 3/66). Pangasiidae fish (Species B/n = 47) were contaminated with zoonotic Vibrio fluvialis (n = 10/47); Salmonella sp. (n = 6/47) and environmental bacteria Micrococcus sp. (n = 3/47). One sample was resistant to all antimicrobials tested and is considered to be Methicillin Resistant S. aureus. Mud, natural diet, or vegetation identified in Sp. A fish/or packaging were significantly associated with the presence of Pseudomonas spp. The study also showed that visibly clean fish (Sp. B) may harbour zoonotic bacteria and that certain types of bacteria are common to fish groups, preparations, and contaminants. Further investigations are required to support the development of appropriate food safety recommendations in Australia.
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Affiliation(s)
- Michelle Williams
- School of Agricultural, Environmental and Veterinary Sciences & Graham Centre for Agricultural Innovation, Charles Sturt University, Wagga Wagga, NSW 2650, Australia
- Correspondence: or
| | - Shokoofeh Shamsi
- School of Agricultural, Environmental and Veterinary Sciences & Graham Centre for Agricultural Innovation, Charles Sturt University, Wagga Wagga, NSW 2650, Australia
| | - Thomas Williams
- Institute for Future Farming Systems, CQUniversity, Rockhampton, QLD 4701, Australia
| | - Marta Hernandez-Jover
- School of Agricultural, Environmental and Veterinary Sciences & Graham Centre for Agricultural Innovation, Charles Sturt University, Wagga Wagga, NSW 2650, Australia
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21
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Xu S, Zhan L, Tang W, Wang Q, Dai Z, Zhou L, Feng T, Chen M, Wu T, Hu E, Yu G. MicrobiotaProcess: A comprehensive R package for deep mining microbiome. Innovation (N Y) 2023; 4:100388. [PMID: 36895758 PMCID: PMC9988672 DOI: 10.1016/j.xinn.2023.100388] [Citation(s) in RCA: 16] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Accepted: 01/30/2023] [Indexed: 02/05/2023] Open
Abstract
The data output from microbiome research is growing at an accelerating rate, yet mining the data quickly and efficiently remains difficult. There is still a lack of an effective data structure to represent and manage data, as well as flexible and composable analysis methods. In response to these two issues, we designed and developed the MicrobiotaProcess package. It provides a comprehensive data structure, MPSE, to better integrate the primary and intermediate data, which improves the integration and exploration of the downstream data. Around this data structure, the downstream analysis tasks are decomposed and a set of functions are designed under a tidy framework. These functions independently perform simple tasks and can be combined to perform complex tasks. This gives users the ability to explore data, conduct personalized analyses, and develop analysis workflows. Moreover, MicrobiotaProcess can interoperate with other packages in the R community, which further expands its analytical capabilities. This article demonstrates the MicrobiotaProcess for analyzing microbiome data as well as other ecological data through several examples. It connects upstream data, provides flexible downstream analysis components, and provides visualization methods to assist in presenting and interpreting results.
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Affiliation(s)
- Shuangbin Xu
- Division of Laboratory Medicine, Microbiome Medicine Center, Zhujiang Hospital, Southern Medical University, Guangzhou 510515, China.,Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
| | - Li Zhan
- Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
| | - Wenli Tang
- Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
| | - Qianwen Wang
- Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
| | - Zehan Dai
- Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
| | - Lang Zhou
- Division of Laboratory Medicine, Microbiome Medicine Center, Zhujiang Hospital, Southern Medical University, Guangzhou 510515, China.,Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
| | - Tingze Feng
- Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
| | - Meijun Chen
- Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
| | - Tianzhi Wu
- Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
| | - Erqiang Hu
- Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
| | - Guangchuang Yu
- Division of Laboratory Medicine, Microbiome Medicine Center, Zhujiang Hospital, Southern Medical University, Guangzhou 510515, China.,Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou 510515, China
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22
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Sun XL, Xiang H, Xiong HQ, Fang YC, Wang Y. Bioremediation of microplastics in freshwater environments: A systematic review of biofilm culture, degradation mechanisms, and analytical methods. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 863:160953. [PMID: 36543072 DOI: 10.1016/j.scitotenv.2022.160953] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Revised: 12/02/2022] [Accepted: 12/12/2022] [Indexed: 06/17/2023]
Abstract
Microplastics, defined as particles <5 mm in diameter, are emerging environmental pollutants that pose a threat to ecosystems and human health. Biofilm degradation of microplastics may be an ecologically friendly approach. This review systematically summarises the factors affecting biofilm degradation of microplastics and proposes feasible methods to improve the efficiency of microplastic biofilm degradation. Environmentally insensitive microorganisms were screened, optimized, and commercially cultured to facilitate the practical application of this technology. For strain screening, technology should focus on microorganisms/strains that can modify the hydrophobicity of microplastics, degrade the crystalline zone of microplastics, and metabolise additives in microplastics. The biodegradation mechanism is also described; microorganisms secreting extracellular oxidases and hydrolases are key factors for degradation. Measuring the changes in molecular weight distribution (MWD) enables better analysis of the biodegradation behaviour of microplastics. Biofilm degradation of microplastics has relatively few applications because of its low efficiency; however, enrichment of microplastics in freshwater environments and wastewater treatment plant tailwater is currently the most effective method for treating microplastics with biofilms.
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Affiliation(s)
- Xiao-Long Sun
- Yunnan Key Laboratory of Plateau Wetland Conservation, Restoration and Ecological Services, College of Wetlands, Southwest Forestry University, Kunming 650224, China; National Plateau Wetlands Research Center, Southwest Forestry University, Kunming 650224, China; National Wetland Ecosystem Fixed Research Station of Yunnan Dianchi, Southwest Forestry University, Kunming 650224, China.
| | - Hong Xiang
- Yunnan Key Laboratory of Plateau Wetland Conservation, Restoration and Ecological Services, College of Wetlands, Southwest Forestry University, Kunming 650224, China; National Plateau Wetlands Research Center, Southwest Forestry University, Kunming 650224, China; National Wetland Ecosystem Fixed Research Station of Yunnan Dianchi, Southwest Forestry University, Kunming 650224, China
| | - Hao-Qin Xiong
- Yunnan Key Laboratory of Plateau Wetland Conservation, Restoration and Ecological Services, College of Wetlands, Southwest Forestry University, Kunming 650224, China; National Plateau Wetlands Research Center, Southwest Forestry University, Kunming 650224, China; National Wetland Ecosystem Fixed Research Station of Yunnan Dianchi, Southwest Forestry University, Kunming 650224, China
| | - Yi-Chuan Fang
- Yunnan Key Laboratory of Plateau Wetland Conservation, Restoration and Ecological Services, College of Wetlands, Southwest Forestry University, Kunming 650224, China; National Plateau Wetlands Research Center, Southwest Forestry University, Kunming 650224, China; National Wetland Ecosystem Fixed Research Station of Yunnan Dianchi, Southwest Forestry University, Kunming 650224, China
| | - Yuan Wang
- Yunnan Key Laboratory of Plateau Wetland Conservation, Restoration and Ecological Services, College of Wetlands, Southwest Forestry University, Kunming 650224, China; National Plateau Wetlands Research Center, Southwest Forestry University, Kunming 650224, China; National Wetland Ecosystem Fixed Research Station of Yunnan Dianchi, Southwest Forestry University, Kunming 650224, China
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23
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Xianbiao J, Baohong C, Kang W, Conghui P, Yahui G, Hui L. A new microalgae community — Epimicroplastic microalgae (EMP-MA). ALGAL RES 2023. [DOI: 10.1016/j.algal.2023.103059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/17/2023]
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24
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Leighton RE, Correa Vélez KE, Xiong L, Creech AG, Amirichetty KP, Anderson GK, Cai G, Norman RS, Decho AW. Vibrio parahaemolyticus and Vibrio vulnificus in vitro colonization on plastics influenced by temperature and strain variability. Front Microbiol 2023; 13:1099502. [PMID: 36704570 PMCID: PMC9871911 DOI: 10.3389/fmicb.2022.1099502] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Accepted: 12/16/2022] [Indexed: 01/12/2023] Open
Abstract
Marine bacteria often exist in biofilms as communities attached to surfaces, like plastic. Growing concerns exist regarding marine plastics acting as potential vectors of pathogenic Vibrio, especially in a changing climate. It has been generalized that Vibrio vulnificus and Vibrio parahaemolyticus often attach to plastic surfaces. Different strains of these Vibrios exist having different growth and biofilm-forming properties. This study evaluated how temperature and strain variability affect V. parahaemolyticus and V. vulnificus biofilm formation and characteristics on glass (GL), low-density polyethylene (LDPE), polypropylene (PP), and polystyrene (PS). All strains of both species attached to GL and all plastics at 25, 30, and 35°C. As a species, V. vulnificus produced more biofilm on PS (p ≤ 0.05) compared to GL, and biofilm biomass was enhanced at 25°C compared to 30° (p ≤ 0.01) and 35°C (p ≤ 0.01). However, all individual strains' biofilm biomass and cell densities varied greatly at all temperatures tested. Comparisons of biofilm-forming strains for each species revealed a positive correlation (r = 0.58) between their dry biomass weight and OD570 values from crystal violet staining, and total dry biofilm biomass for both species was greater (p ≤ 0.01) on plastics compared to GL. It was also found that extracellular polymeric substance (EPS) chemical characteristics were similar on all plastics of both species, with extracellular proteins mainly contributing to the composition of EPS. All strains were hydrophobic at 25, 30, and 35°C, further illustrating both species' affinity for potential attachment to plastics. Taken together, this study suggests that different strains of V. parahaemolyticus and V. vulnificus can rapidly form biofilms with high cell densities on different plastic types in vitro. However, the biofilm process is highly variable and is species-, strain-specific, and dependent on plastic type, especially under different temperatures.
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Affiliation(s)
- Ryan E. Leighton
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States,NIEHS Center for Oceans and Human Health and Climate Change Interactions, University of South Carolina, Columbia, SC, United States
| | - Karlen Enid Correa Vélez
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States,NIEHS Center for Oceans and Human Health and Climate Change Interactions, University of South Carolina, Columbia, SC, United States
| | - Liyan Xiong
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States
| | - Addison G. Creech
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States
| | - Karishma P. Amirichetty
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States
| | - Gracie K. Anderson
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States
| | - Guoshuai Cai
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States
| | - R. Sean Norman
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States,NIEHS Center for Oceans and Human Health and Climate Change Interactions, University of South Carolina, Columbia, SC, United States
| | - Alan W. Decho
- Department of Environmental Health Sciences, University of South Carolina, Columbia, SC, United States,NIEHS Center for Oceans and Human Health and Climate Change Interactions, University of South Carolina, Columbia, SC, United States,*Correspondence: Alan W. Decho,
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25
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Deng Z, Zhang N, Jiang L, Liu H, Hu S, Zhang D, Chen B, Liu Q, Sun Y, Chen J, Zhang C. Influence of microplastics on microbial anaerobic detoxification of chlorophenols. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 316:120707. [PMID: 36427829 DOI: 10.1016/j.envpol.2022.120707] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Revised: 11/10/2022] [Accepted: 11/18/2022] [Indexed: 06/16/2023]
Abstract
Microplastics (MPs) can absorb halogenated organic compounds and transport them into marine anaerobic zones. Microbial reductive dehalogenation is a major process that naturally attenuates organohalide pollutants in anaerobic environments. Here, we aimed to determine the mechanisms through which MPs affect the microbe-mediated marine halogen cycle by incubating 2,4,6-trichlorophenol (TCP) dechlorinating cultures with various types of MPs. We found that TCP was dechlorinated to 4-chlorophenol in biotic control and polypropylene (PP) cultures, but essentially terminated at 2,4-dichlorophenol in polyethylene (PE) and polyethylene terephthalate (PET) cultures after incubation for 20 days. Oxygen-containing functional groups such as peroxide and aldehyde were enriched on PE and PET after incubation and corresponded to elevated levels of intracellular reactive oxygen species (ROS) in the microorganisms. Adding PE or PET to the cultures exerted limited effects on hydrogenase and ATPase activities, but delayed the expression of the gene encoding reductive dehalogenase (RDase). Considering the limited changes in the microbial composition of the enriched cultures, these findings suggested that microbial dechlorination is probably affected by MPs through the ROS-induced inhibition of RDase synthesis and/or activity. Overall, our findings showed that extensive MP pollution is unfavorable to environmental xenobiotic detoxification.
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Affiliation(s)
- Zhaochao Deng
- Institute of Marine Biology and Pharmacology, Ocean College, Zhejiang University, Zhoushan, 316021, Zhejiang, China
| | - Ning Zhang
- Department of Environmental Engineering, School of Chemical Engineering and Pharmacy, Henan University of Science and Technology, Luoyang, 471000, Henan, China
| | - Lijia Jiang
- Institute of Marine Biology and Pharmacology, Ocean College, Zhejiang University, Zhoushan, 316021, Zhejiang, China
| | - Hui Liu
- Shengzhou Bureau of Agriculture and Rural Affairs, Shaoxing, 312400, Zhejiang, China
| | - Songtao Hu
- Institute of Marine Biology and Pharmacology, Ocean College, Zhejiang University, Zhoushan, 316021, Zhejiang, China
| | - Dongdong Zhang
- Institute of Marine Biology and Pharmacology, Ocean College, Zhejiang University, Zhoushan, 316021, Zhejiang, China
| | - Bairu Chen
- Institute of Marine Biology and Pharmacology, Ocean College, Zhejiang University, Zhoushan, 316021, Zhejiang, China
| | - Qing Liu
- The Guangxi Key Laboratory of Theory and Technology for Environmental Pollution Control, Guilin University of Technology, Guilin, 541006, Guangxi, China
| | - Yuxia Sun
- Institute of Marine Biology and Pharmacology, Ocean College, Zhejiang University, Zhoushan, 316021, Zhejiang, China
| | - Jiawang Chen
- Institute of Marine Biology and Pharmacology, Ocean College, Zhejiang University, Zhoushan, 316021, Zhejiang, China
| | - Chunfang Zhang
- Institute of Marine Biology and Pharmacology, Ocean College, Zhejiang University, Zhoushan, 316021, Zhejiang, China.
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26
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Zhai X, Zhang XH, Yu M. Microbial colonization and degradation of marine microplastics in the plastisphere: A review. Front Microbiol 2023; 14:1127308. [PMID: 36876073 PMCID: PMC9981674 DOI: 10.3389/fmicb.2023.1127308] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Accepted: 01/27/2023] [Indexed: 02/19/2023] Open
Abstract
Marine microplastic pollution is a growing problem for ecotoxicology that needs to be resolved. In particular, microplastics may be carriers of "dangerous hitchhikers," pathogenic microorganisms, i.e., Vibrio. Microplastics are colonized by bacteria, fungi, viruses, archaea, algae and protozoans, resulting in the biofilm referred to as the "plastisphere." The microbial community composition of the plastisphere differs significantly from those of surrounding environments. Early dominant pioneer communities of the plastisphere belong to primary producers, including diatoms, cyanobacteria, green algae and bacterial members of the Gammaproteobacteria and Alphaproteobacteria. With time, the plastisphere mature, and the diversity of microbial communities increases quickly to include more abundant Bacteroidetes and Alphaproteobacteria than natural biofilms. Factors driving the plastisphere composition include environmental conditions and polymers, with the former having a much larger influence on the microbial community composition than polymers. Microorganisms of the plastisphere may play key roles in degradation of plastic in the oceans. Up to now, many bacterial species, especially Bacillus and Pseudomonas as well as some polyethylene degrading biocatalysts, have been shown to be capable of degrading microplastics. However, more relevant enzymes and metabolisms need to be identified. Here, we elucidate the potential roles of quorum sensing on the plastic research for the first time. Quorum sensing may well become a new research area to understand the plastisphere and promote microplastics degradation in the ocean.
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Affiliation(s)
- Xinyi Zhai
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Xiao-Hua Zhang
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, College of Marine Life Sciences, Ocean University of China, Qingdao, China.,Laboratory for Marine Ecology and Environmental Science, Laoshan Laboratory, Qingdao, China.,Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao, China
| | - Min Yu
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, College of Marine Life Sciences, Ocean University of China, Qingdao, China.,Laboratory for Marine Ecology and Environmental Science, Laoshan Laboratory, Qingdao, China.,Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao, China
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27
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Marsay KS, Ambrosino AC, Koucherov Y, Davidov K, Figueiredo N, Yakovenko I, Itzahri S, Martins M, Sobral P, Oren M. The geographical and seasonal effects on the composition of marine microplastic and its microbial communities: The case study of Israel and Portugal. Front Microbiol 2023; 14:1089926. [PMID: 36910177 PMCID: PMC9992426 DOI: 10.3389/fmicb.2023.1089926] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Accepted: 02/01/2023] [Indexed: 02/24/2023] Open
Abstract
Introduction Floating microplastic debris are found in most marine environments around the world. Due to their low density and high durability, plastic polymers such as polyethylene, polypropylene, and polystyrene serve as stable floating substrates for the colonization of diverse communities of marine organisms. Despite the high abundance of microplastic debris in the oceans, it is not clear how the geographical location and season affect the composition of marine microplastic and its bacterial microbiome in the natural environment. Methods To address this question, microplastic debris were collected from the sea surface near estuaries in the Mediterranean Sea (Israel) and in the Atlantic Ocean (Portugal) during summer and winter of 2021. The microplastic physical characteristics, including shape, color, and polymer composition, were analyzed and the taxonomic structure of the microplastic bacterial microbiome was characterized using a high-resolution metabarcoding pipeline. Results Our results, supported by previously published data, suggest that the plastisphere is a highly diverse ecosystem which is strongly shaped by spatial and temporal environmental factors. The geographical location had the highest impact on the plastisphere physical characteristics and its microbiome composition, followed by the season. Our metabarcoding analysis showed great variability between the different marine environments with a very limited microbiome "core." Discussion This notion further emphasizes the importance of plastisphere studies in different geographical locations and/or seasons for the characterization of the plastisphere and the identification of plastic-associated species.
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Affiliation(s)
| | - Ana C Ambrosino
- MARE - Marine and Environmental Sciences Centre & ARNET - Aquatic Research Network Associated Laboratory, NOVA School of Science and Technology, NOVA University of Lisbon, Lisbon, Portugal
| | - Yuri Koucherov
- Department of Molecular Biology, Ariel University, Ariel, Israel
| | - Keren Davidov
- Department of Molecular Biology, Ariel University, Ariel, Israel
| | - Neusa Figueiredo
- MARE - Marine and Environmental Sciences Centre & ARNET - Aquatic Research Network Associated Laboratory, NOVA School of Science and Technology, NOVA University of Lisbon, Lisbon, Portugal
| | - Iryna Yakovenko
- Department of Molecular Biology, Ariel University, Ariel, Israel
| | - Sheli Itzahri
- Department of Molecular Biology, Ariel University, Ariel, Israel
| | - Marta Martins
- MARE - Marine and Environmental Sciences Centre & ARNET - Aquatic Research Network Associated Laboratory, NOVA School of Science and Technology, NOVA University of Lisbon, Lisbon, Portugal.,DCEA - Department of Environmental Sciences and Engineering, NOVA School of Science and Technology, NOVA University of Lisbon, Lisbon, Portugal
| | - Paula Sobral
- MARE - Marine and Environmental Sciences Centre & ARNET - Aquatic Research Network Associated Laboratory, NOVA School of Science and Technology, NOVA University of Lisbon, Lisbon, Portugal
| | - Matan Oren
- Department of Molecular Biology, Ariel University, Ariel, Israel
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28
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Narloch I, Gackowska A, Wejnerowska G. Microplastic in the Baltic Sea: A review of distribution processes, sources, analysis methods and regulatory policies. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 315:120453. [PMID: 36272601 DOI: 10.1016/j.envpol.2022.120453] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Revised: 10/05/2022] [Accepted: 10/14/2022] [Indexed: 06/16/2023]
Abstract
Microplastics pollution is an issue of great concern for scientists, governmental bodies, ecological organisations, and the general public. Microplastics pollution is widespread and is a great environmental problem on account of its potential toxicity for marine biota and human health. Today, almost all the world's seas and oceans are polluted with microplastics. The Baltic Sea is a semi-enclosed reservoir of brackish water and is a hotspot for contamination in terms of eutrophication and the presence of organic matter. Microplastics are quite intense, based on data from studies of marine litter and microplastics in the Baltic Sea. The number of microplastics in the Baltic Sea water is 0.07-3300 particles/m3, and in sediments 0-10179 particles/kg. These amounts prove that the waters and sediments of the Baltic Sea are heavily contaminated with microplastics. This article provides a comprehensive review of the microplastic origins and transport routes to the Baltic Sea. The data is presented as the concentration of microplastics in surface waters, sediments, and sea sand. The extraction methods used and the microplastics techniques are also presented. The possibilities and limitations of water and sediment sampling methods for microplastics determination were summarised, taking into account sampling tools, volume and depth. Extraction, separation, filtration, and visual sorting are outlined as sample preparation techniques for microplastic analysis. This review also focuses on the problems of obtaining data relevant to the development of the mathematical models necessary to monitor trends in the spread of microplastics in the Baltic Sea. Finally, several important laws and policies, which are in place in the Baltic States to control and manage microplastic pollution in the region, are highlighted.
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Affiliation(s)
- Izabela Narloch
- Department of Food Analysis and Environmental Protection, Faculty of Chemical Technology and Engineering, Bydgoszcz University of Science and Technology, 3 Seminaryjna Street, 85-236, Bydgoszcz, Poland
| | - Alicja Gackowska
- Department of Food Analysis and Environmental Protection, Faculty of Chemical Technology and Engineering, Bydgoszcz University of Science and Technology, 3 Seminaryjna Street, 85-236, Bydgoszcz, Poland.
| | - Grażyna Wejnerowska
- Department of Food Analysis and Environmental Protection, Faculty of Chemical Technology and Engineering, Bydgoszcz University of Science and Technology, 3 Seminaryjna Street, 85-236, Bydgoszcz, Poland
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29
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Gubelit YI. Studies of Lacustrine Phytoperiphyton: Current Trends and Prospects Considering Algae-Bacteria Interactions. RUSS J ECOL+ 2022. [DOI: 10.1134/s1067413622060054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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30
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Raposo A, Mansilha C, Veber A, Melo A, Rodrigues J, Matias R, Rebelo H, Grossinho J, Cano M, Almeida C, Nogueira ID, Puskar L, Schade U, Jordao L. Occurrence of polycyclic aromatic hydrocarbons, microplastics and biofilms in Alqueva surface water at touristic spots. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 850:157983. [PMID: 35973540 DOI: 10.1016/j.scitotenv.2022.157983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 07/26/2022] [Accepted: 08/08/2022] [Indexed: 06/15/2023]
Abstract
Freshwater pollution is a huge concern. A study aiming to evaluate physico-chemical characteristics, microbiota, occurrence of two groups of persistent environmental pollutants with similar chemical properties (polycyclic aromatic hydrocarbons- PAHs and microplastics - MPs) in Alqueva's surface water was performed during 2021. Water samples were collected at three spots related to touristic activities (two beaches and one marina) during the Winter, Spring, Summer and Autumn seasons. In addition, the presence of biofilms on plastic and natural materials (stone, wood/ vegetal materials) were assessed and compared. Water quality based on physicochemical parameters was acceptable with a low eutrophication level. PAHs concentration levels were lower than the standard limits established for surface waters by international organizations. However, carcinogenic compounds were detected in two sampling locations, which can pose a problem for aquatic ecosystems. PAHs profiles showed significant differences when comparing the dry seasons with the rainy seasons, with a higher number of different compounds detected in Spring. Low molecular weigh compounds, usually associated with the atmospheric deposition and petroleum contamination, were more prevalent. MPs were detected in all samples except one during the Winter season. The polymers detected were poly(methyl-2-methylpropenoate), polystyrene, polyethylene terephthalate, polyamide, polypropylene, styrene butadiene, polyvinyl chloride and low /high density polyethylene with the last being the most frequent. Biofilms were more often detected on plastics than on natural materials. In addition, biofilms detected on plastics were more complex with higher microbial diversity (e.g., bacteria, fungi/yeast and phytoplancton organisms) and richer in extrapolymeric material. Based on morphological analysis a good agreement between microbiota and microorganism present in the biofilms was found. Among microbiota were identified microorganisms previously linked to plastic and PAHs detoxification suggesting the need for further studies to evaluate the viability of using biofilms as part of a green bioremediation strategy to mitigate water pollution.
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Affiliation(s)
- Ana Raposo
- Instituto Nacional de Saude Dr. Ricardo Jorge, Departamento de Saude Ambiental, Av Padre Cruz, 1649-016 Lisboa, Portugal.
| | - Catarina Mansilha
- Instituto Nacional de Saude Dr. Ricardo Jorge, Departamento de Saude Ambiental, Rua Alexandre Herculano 321, 4000-055 Porto, Portugal; Associated Laboratory for Green Chemistry (LAQV) of the Network of Chemistry and Technology (REQUIMTE), University of Porto, Praça Gomes Teixeira, 4051-401 Porto, Portugal.
| | - Alexander Veber
- Humboldt Universität zu Berlin, Institute of Chemistry, Brook-Taylor Strasse 2, D-12489 Berlin, Germany; Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Infrared Beamline IRIS, Albert-Einstein-Strasse 15, D-12489 Berlin, Germany.
| | - Armindo Melo
- Instituto Nacional de Saude Dr. Ricardo Jorge, Departamento de Saude Ambiental, Rua Alexandre Herculano 321, 4000-055 Porto, Portugal; Associated Laboratory for Green Chemistry (LAQV) of the Network of Chemistry and Technology (REQUIMTE), University of Porto, Praça Gomes Teixeira, 4051-401 Porto, Portugal.
| | - Joao Rodrigues
- Instituto Nacional de Saude Dr. Ricardo Jorge, Departamento de Doenças Infeciosas, Av Padre Cruz, 1649-016 Lisboa, Portugal.
| | - Rui Matias
- Instituto Nacional de Saude Dr. Ricardo Jorge, Departamento de Doenças Infeciosas, Av Padre Cruz, 1649-016 Lisboa, Portugal.
| | - Helena Rebelo
- Instituto Nacional de Saude Dr. Ricardo Jorge, Departamento de Saude Ambiental, Av Padre Cruz, 1649-016 Lisboa, Portugal.
| | - Jose Grossinho
- Instituto Nacional de Saude Dr. Ricardo Jorge, Departamento de Saude Ambiental, Av Padre Cruz, 1649-016 Lisboa, Portugal.
| | - Manuela Cano
- Instituto Nacional de Saude Dr. Ricardo Jorge, Departamento de Saude Ambiental, Av Padre Cruz, 1649-016 Lisboa, Portugal.
| | - Cristina Almeida
- Instituto Nacional de Saude Dr. Ricardo Jorge, Departamento de Saude Ambiental, Av Padre Cruz, 1649-016 Lisboa, Portugal.
| | - Isabel D Nogueira
- Instituto Superior Técnico, MicroLab, Av Rovisco Pais, 10049-001 Lisboa, Portugal.
| | - Ljiljana Puskar
- Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Infrared Beamline IRIS, Albert-Einstein-Strasse 15, D-12489 Berlin, Germany.
| | - Ulrich Schade
- Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Infrared Beamline IRIS, Albert-Einstein-Strasse 15, D-12489 Berlin, Germany.
| | - Luisa Jordao
- Instituto Nacional de Saude Dr. Ricardo Jorge, Departamento de Saude Ambiental, Av Padre Cruz, 1649-016 Lisboa, Portugal.
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Lemonnier C, Chalopin M, Huvet A, Le Roux F, Labreuche Y, Petton B, Maignien L, Paul-Pont I, Reveillaud J. Time-series incubations in a coastal environment illuminates the importance of early colonizers and the complexity of bacterial biofilm dynamics on marine plastics. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 312:119994. [PMID: 36028078 DOI: 10.1016/j.envpol.2022.119994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Revised: 07/26/2022] [Accepted: 08/14/2022] [Indexed: 06/15/2023]
Abstract
The problematic of microplastics pollution in the marine environment is tightly linked to their colonization by a wide diversity of microorganisms, the so-called plastisphere. The composition of the plastisphere relies on a complex combination of multiple factors including the surrounding environment, the time of incubation along with the polymer type, making it difficult to understand how the biofilm evolves during the microplastic lifetime over the oceans. To better define bacterial community assembly processes on plastics, we performed a 5 months spatio-temporal survey of the plastisphere in an oyster farming area in the Bay of Brest (France). We deployed three types of plastic pellets in two positions in the foreshore and in the water column. Plastic-associated biofilm composition in all these conditions was monitored using 16 S rRNA metabarcoding and compared to free-living and attached bacterial members of seawater. We observed that bacterial families associated to plastic pellets were significantly distinct from the ones found in seawater, with a significant prevalence of filamentous Cyanobacteria on plastics. No convergence towards a unique plastisphere was detected between polymers exposed in the intertidal and subtidal area, emphasizing the central role of the surrounding environment on constantly shaping the plastisphere community diversity. However, we could define a bulk of early-colonizers of marine biofilms such as Alteromonas, Pseudoalteromonas or Vibrio. These early-colonizers could reach high abundances in floating microplastics collected in field-sampling studies, suggesting the plastic-associated biofilms could remain at early development stages across large oceanic scales. Our study raises the hypothesis that most members of the plastisphere, including putative pathogens, could result of opportunistic colonization processes and unlikely long-term transport.
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Affiliation(s)
- C Lemonnier
- Univ Brest (UBO), CNRS, IFREMER, Laboratoire de Microbiologie des Environnements Extrêmes, F-29280, Plouzané, France.
| | - M Chalopin
- Univ Brest (UBO), CNRS, IFREMER, IRD, LEMAR, F-29280, Plouzané, France
| | - A Huvet
- Univ Brest (UBO), CNRS, IFREMER, IRD, LEMAR, F-29280, Plouzané, France
| | - F Le Roux
- Ifremer, Unité Physiologie Fonctionnelle des Organismes Marins, ZI de La Pointe Du Diable, CS 10070, F-29280, Plouzané, France
| | - Y Labreuche
- Ifremer, Unité Physiologie Fonctionnelle des Organismes Marins, ZI de La Pointe Du Diable, CS 10070, F-29280, Plouzané, France; Sorbonne Universités, UPMC Paris 06, CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff Cedex, France
| | - B Petton
- Univ Brest (UBO), CNRS, IFREMER, IRD, LEMAR, F-29280, Plouzané, France
| | - L Maignien
- Univ Brest (UBO), CNRS, IFREMER, Laboratoire de Microbiologie des Environnements Extrêmes, F-29280, Plouzané, France
| | - I Paul-Pont
- Univ Brest (UBO), CNRS, IFREMER, IRD, LEMAR, F-29280, Plouzané, France
| | - J Reveillaud
- MIVEGEC, University of Montpellier, INRAe, CNRS, IRD, Montpellier, France
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Zhang W, Yuan W, Chen L, Ye C, Jiang Y, Yang Y. Uniqueness and Dependence of Bacterial Communities on Microplastics: Comparison with Water, Sediment, and Soil. MICROBIAL ECOLOGY 2022; 84:985-995. [PMID: 34767048 DOI: 10.1007/s00248-021-01919-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Accepted: 11/04/2021] [Indexed: 06/13/2023]
Abstract
Revealing the dependence and uniqueness of microbial communities on microplastics could help us better understand the assembly of the microplastic microbial community in river ecosystems. In this study, we investigated the composition and ecological functions of the bacterial community on microplastics from the Three Gorges Reservoir area compared with those in water, sediment, and soil at species-level via full-length 16S rRNA gene sequencing. The results showed that the full-length 16S rRNA sequencing provided more detail and accurate taxa resolution of the bacterial community in microplastics (100%), water (99.90%), sediment (99.95%), and soil (100%). Betaproteobacteriales were the most abundant bacteria in microplastics (14.1%), water (32.3%), sediments (27.2%), and soil (21.0%). Unexpectedly, oligotrophic SAR11 clade was the third abundant bacteria (8.51%) and dominated the ecological functions of the bacterial community in water, but it was less observed on microplastics, with a relative abundance of 2.73×10-5. However, four opportunistic pathogens identified at the species level were selectively enriched on microplastics. Stenotrophomonas maltophilia was the main opportunistic pathogen on microplastics (0.29%). Sediment rather than soil and water may be contributed mostly to pathogens on microplastics. Moreover, some bacteria species with the biodegradation function of microplastics were enriched on microplastics, such as bacteria Rhodobacter sp., and endemic bacteria Luteimonas sp. The distinct bacteria composition on microplastics enhanced several ecological functions, such as xenobiotics biodegradation, which allows screening the bacteria with the biodegradation function of microplastics through long-term exposure.
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Affiliation(s)
- Weihong Zhang
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Lumo Road No.1, Wuchang District, Wuhan, 430074, China
- Center of the Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, 430074, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Wenke Yuan
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Lumo Road No.1, Wuchang District, Wuhan, 430074, China
- Center of the Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, 430074, China
| | - Lu Chen
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Lumo Road No.1, Wuchang District, Wuhan, 430074, China
- Center of the Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, 430074, China
| | - Chen Ye
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Lumo Road No.1, Wuchang District, Wuhan, 430074, China
- Center of the Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, 430074, China
| | - Ying Jiang
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Lumo Road No.1, Wuchang District, Wuhan, 430074, China
| | - Yuyi Yang
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Lumo Road No.1, Wuchang District, Wuhan, 430074, China.
- Center of the Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, 430074, China.
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Hu L, Zhao Y, Xu H. Trojan horse in the intestine: A review on the biotoxicity of microplastics combined environmental contaminants. JOURNAL OF HAZARDOUS MATERIALS 2022; 439:129652. [PMID: 35901632 DOI: 10.1016/j.jhazmat.2022.129652] [Citation(s) in RCA: 45] [Impact Index Per Article: 22.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Revised: 07/16/2022] [Accepted: 07/19/2022] [Indexed: 05/14/2023]
Abstract
With the reported ability of microplastics (MPs) to act as "Trojan horses" carrying other environmental contaminants, the focus of researches has shifted from their ubiquitous occurrence to interactive toxicity. In this review, we provided the latest knowledge on the processes and mechanisms of interaction between MPs and co-contaminants (heavy metals, persistent organic pollutants, pathogens, nanomaterials and other contaminants) and discussed the influencing factors (environmental conditions and characteristics of polymer and contaminants) that affect the adsorption/desorption process. In addition, the bio-toxicological outcomes of mixtures are elaborated based on the damaging effects on the intestinal barrier. Our review showed that the interaction processes and toxicological outcomes of mixture are complex and variable, and the intestinal barrier should receive more attention as the first line of defensing against MPs and environmental contaminants invasion. Moreover, we pointed out several knowledge gaps in this new research area and suggested directions for future studies in order to understand the multiple factors involved, such as epidemiological assessment, nanoplastics, mechanisms for toxic alteration and the fate of mixtures after desorption.
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Affiliation(s)
- Liehai Hu
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China
| | - Yu Zhao
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China
| | - Hengyi Xu
- State Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, China.
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Okeke ES, Ezeorba TPC, Chen Y, Mao G, Feng W, Wu X. Ecotoxicological and health implications of microplastic-associated biofilms: a recent review and prospect for turning the hazards into benefits. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:70611-70634. [PMID: 35994149 DOI: 10.1007/s11356-022-22612-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Accepted: 08/16/2022] [Indexed: 06/15/2023]
Abstract
Microplastics (MPs), over the years, have been regarded as a severe environmental nuisance with adverse effects on our ecosystem as well as human health globally. In recent times, microplastics have been reported to support biofouling by genetically diverse organisms resulting in the formation of biofilms. Biofilms, however, could result in changes in the physicochemical properties of microplastics, such as their buoyancy and roughness. Many scholars perceived the microplastic-biofilm association as having more severe consequences, providing evidence of its effects on the environment, aquatic life, and nutrient cycles. Furthermore, other researchers have shown that microplastic-associated biofilms have severe consequences on human health as they serve as vectors of heavy metals, toxic chemicals, and antibiotic resistance genes. Despite what is already known about their adverse effects, other interesting avenues are yet to be fully explored or developed to turn the perceived negative microplastic-biofilm association to our advantage. The major inclusion criteria for relevant literature were that it must focus on microplastic association biofilms, while we excluded papers solely on biofilms or microplastics. A total of 242 scientific records were obtained. More than 90% focused on explaining the environmental and health impacts of microplastic-biofilm association, whereas only very few studies have reported the possibilities and opportunities in turning the microplastic biofilms association into benefits. In summary, this paper concisely reviews the current knowledge of microplastic-associated biofilms and their adverse consequences and further proposes some approaches that can be developed to turn the negative association into positive.
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Affiliation(s)
- Emmanuel Sunday Okeke
- Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China
- Department of Biochemistry, Faculty of Biological Sciences, University of Nigeria, Nsukka, Enugu State, 41000, Nigeria
- Natural Science Unit, SGS, University of Nigeria, Nsukka, Enugu State, 41000, Nigeria
| | | | - Yao Chen
- Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China
| | - Guanghua Mao
- Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China
| | - Weiwei Feng
- Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China.
| | - Xiangyang Wu
- Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China.
- Institute of Environmental Health and Ecological Security, School of the Environment and Safety, Jiangsu University, 301 Xuefu Rd., 212013, Zhenjiang, Jiangsu, China.
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35
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Lear L, Padfield D, Dowsett T, Jones M, Kay S, Hayward A, Vos M. Bacterial colonisation dynamics of household plastics in a coastal environment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:156199. [PMID: 35636543 DOI: 10.1016/j.scitotenv.2022.156199] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2021] [Revised: 05/06/2022] [Accepted: 05/20/2022] [Indexed: 05/25/2023]
Abstract
Accumulation of plastics in the marine environment has widespread detrimental consequences for ecosystems and wildlife. Marine plastics are rapidly colonised by a wide diversity of bacteria, including human pathogens, posing potential risks to health. Here, we investigate the effect of polymer type, residence time and estuarine location on bacterial colonisation of common household plastics, including pathogenic bacteria. We submerged five main household plastic types: low-density PE (LDPE), high-density PE (HDPE), polypropylene (PP), polyvinyl chloride (PVC) and polyethylene terephthalate (PET) at an estuarine site in Cornwall (U.K.) and tracked bacterial colonisation dynamics. Using both culture-dependent and culture-independent approaches, we found that bacteria rapidly colonised plastics irrespective of polymer type, reaching culturable densities of up to 1000 cells cm3 after 7 weeks. Community composition of the biofilms changed over time, but not among polymer types. The presence of pathogenic bacteria, quantified using the insect model Galleria mellonella, increased dramatically over a five-week period, with Galleria mortality increasing from 4% in week one to 65% in week five. No consistent differences in virulence were observed between polymer types. Pathogens isolated from plastic biofilms using Galleria enrichment included Serratia and Enterococcus species and they harboured a wide range of antimicrobial resistance genes. Our findings show that plastics in coastal waters are rapidly colonised by a wide diversity of bacteria independent of polymer type. Further, our results show that marine plastic biofilms become increasingly associated with virulent bacteria over time.
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Affiliation(s)
- Luke Lear
- European Centre for Environment and Human Health, University of Exeter Medical School, Environment and Sustainability Institute, Penryn Campus, TR10 9FE, United Kingdom
| | - Daniel Padfield
- European Centre for Environment and Human Health, University of Exeter Medical School, Environment and Sustainability Institute, Penryn Campus, TR10 9FE, United Kingdom.
| | - Tirion Dowsett
- European Centre for Environment and Human Health, University of Exeter Medical School, Environment and Sustainability Institute, Penryn Campus, TR10 9FE, United Kingdom
| | - Maia Jones
- European Centre for Environment and Human Health, University of Exeter Medical School, Environment and Sustainability Institute, Penryn Campus, TR10 9FE, United Kingdom
| | - Suzanne Kay
- European Centre for Environment and Human Health, University of Exeter Medical School, Environment and Sustainability Institute, Penryn Campus, TR10 9FE, United Kingdom
| | - Alex Hayward
- Department of Biosciences, University of Exeter, Penryn Campus, TR10 9FE, United Kingdom
| | - Michiel Vos
- European Centre for Environment and Human Health, University of Exeter Medical School, Environment and Sustainability Institute, Penryn Campus, TR10 9FE, United Kingdom
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36
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Tagg AS, Sperlea T, Labrenz M, Harrison JP, Ojeda JJ, Sapp M. Year-Long Microbial Succession on Microplastics in Wastewater: Chaotic Dynamics Outweigh Preferential Growth. Microorganisms 2022; 10:microorganisms10091775. [PMID: 36144377 PMCID: PMC9506493 DOI: 10.3390/microorganisms10091775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Revised: 08/29/2022] [Accepted: 08/30/2022] [Indexed: 11/16/2022] Open
Abstract
Microplastics are a globally-ubiquitous aquatic pollutant and have been heavily studied over the last decade. Of particular interest are the interactions between microplastics and microorganisms, especially the pursuit to discover a plastic-specific biome, the so-called plastisphere. To follow this up, a year-long microcosm experimental setup was deployed to expose five different microplastic types (and silica beads control) to activated aerobic wastewater in controlled conditions, with microbial communities being measured four times over the course of the year using 16S rDNA (bacterial) and ITS (fungal) amplicon sequencing. The biofilm community shows no evidence of a specific plastisphere, even after a year of incubation. Indeed, the microbial communities (particularly bacterial) show a clear trend of increasing dissimilarity between plastic types as time increases. Despite little evidence for a plastic-specific community, there was a slight grouping observed for polyolefins (PE and PP) in 6–12-month biofilms. Additionally, an OTU assigned to the genus Devosia was identified on many plastics, increasing over time while showing no growth on silicate (natural particle) controls, suggesting this could be either a slow-growing plastic-specific taxon or a symbiont to such. Both substrate-associated findings were only possible to observe in samples incubated for 6–12 months, which highlights the importance of studying long-term microbial community dynamics on plastic surfaces.
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Affiliation(s)
- Alexander S. Tagg
- Leibniz-Institut für Ostseeforschung Warnemünde, Seestraße 15, 18119 Rostock, Germany
- Department of Chemical Engineering, Faculty of Science and Engineering, Swansea University, Swansea SA1 8EN, UK
- Correspondence:
| | - Theodor Sperlea
- Leibniz-Institut für Ostseeforschung Warnemünde, Seestraße 15, 18119 Rostock, Germany
| | - Matthias Labrenz
- Leibniz-Institut für Ostseeforschung Warnemünde, Seestraße 15, 18119 Rostock, Germany
| | - Jesse P. Harrison
- CSC—IT Center for Science Ltd., P.O. Box 405, FI-02101 Espoo, Finland
| | - Jesús J. Ojeda
- Department of Chemical Engineering, Faculty of Science and Engineering, Swansea University, Swansea SA1 8EN, UK
| | - Melanie Sapp
- Institute of Human Genetics, University Hospital Düsseldorf, Heinrich Heine University, Moorenstrasse 5, 40225 Düsseldorf, Germany
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Vaksmaa A, Egger M, Lüke C, Martins PD, Rosselli R, Asbun AA, Niemann H. Microbial communities on plastic particles in surface waters differ from subsurface waters of the North Pacific Subtropical Gyre. MARINE POLLUTION BULLETIN 2022; 182:113949. [PMID: 35932724 DOI: 10.1016/j.marpolbul.2022.113949] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 07/08/2022] [Accepted: 07/11/2022] [Indexed: 06/15/2023]
Abstract
The long-term fate of plastics in the ocean and their interactions with marine microorganisms remain poorly understood. In particular, the role of sinking plastic particles as a transport vector for surface microbes towards the deep sea has not been investigated. Here, we present the first data on the composition of microbial communities on floating and suspended plastic particles recovered from the surface to the bathypelagic water column (0-2000 m water depth) of the North Pacific Subtropical Gyre. Microbial community composition of suspended plastic particles differed from that of plastic particles afloat at the sea surface. However, in both compartments, a diversity of hydrocarbon-degrading bacteria was identified. These findings indicate that microbial community members initially present on floating plastics are quickly replaced by microorganisms acquired from deeper water layers, thus suggesting a limited efficiency of sinking plastic particles to vertically transport microorganisms in the North Pacific Subtropical Gyre.
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Affiliation(s)
- Annika Vaksmaa
- Department of Marine Microbiology & Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, 't Horntje, the Netherlands.
| | - Matthias Egger
- The Ocean Cleanup, Rotterdam, the Netherlands; Egger Research and Consulting, St. Gallen, Switzerland
| | - Claudia Lüke
- Radboud University, Department of Microbiology, Nijmegen, the Netherlands
| | | | - Riccardo Rosselli
- Departamento de Fisiología, Genética y Microbiología, Facultad de Ciencias, Universidad de Alicante, Spain; LABAQUA S.A.U, C/Dracma 16-18, Pol. Ind. Las Atalayas, 03114 Alicante, Spain
| | - Alejandro Abdala Asbun
- Department of Marine Microbiology & Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, 't Horntje, the Netherlands
| | - Helge Niemann
- Department of Marine Microbiology & Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, 't Horntje, the Netherlands; Department of Earth Sciences, Faculty of Geosciences, Utrecht University, Utrecht, the Netherlands
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38
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Basurko OC, Ruiz I, Rubio A, Beldarrain B, Kukul D, Cózar A, Galli M, Destang T, Larreta J. The coastal waters of the south-east Bay of Biscay a dead-end for neustonic plastics. MARINE POLLUTION BULLETIN 2022; 181:113881. [PMID: 35835053 PMCID: PMC9361389 DOI: 10.1016/j.marpolbul.2022.113881] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 06/20/2022] [Accepted: 06/21/2022] [Indexed: 05/29/2023]
Abstract
Numerical models point to the south-east Bay of Biscay as a convergence area for floating particles, including plastics. The few existing studies on plastic abundance in the area mainly focus on open waters and yet information on the coastal area is limited. To fill this gap, neustonic samples were taken along the coastal waters of the south-east Bay of Biscay (2017-2020) to define the spatial distribution of plastic abundances and composition. Results show an average plastic abundance of 739,395 ± 2,625,271 items/km2 (998 ± 4338 g/km2). French waters were more affected, with five times higher plastic abundances than Spanish coasts. Microplastics represented 93 % of the total abundance of plastic items (28 % in weight), mesoplastics 7 % (26 %) and macroplastics 1 % (46 %). This study demonstrates that this area is a hotspot for plastic with levels in coastal waters similar to those in the Mediterranean Sea or other litter aggregation areas.
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Affiliation(s)
- Oihane C Basurko
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea z/g, 20110 Pasaia, Spain.
| | - Irene Ruiz
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea z/g, 20110 Pasaia, Spain
| | - Anna Rubio
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea z/g, 20110 Pasaia, Spain
| | - Beatriz Beldarrain
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea z/g, 20110 Pasaia, Spain
| | - Deniz Kukul
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea z/g, 20110 Pasaia, Spain
| | - Andrés Cózar
- Departamento de Biología, University of Cadiz and European University of the Seas (SEA-EU), Instituto Universitario de Investigación Marina (INMAR), Puerto Real, Spain
| | - Matteo Galli
- Department of Physical, Earth and Environmental Sciences, University of Siena, Via Mattioli 4, 53100 Siena, Italy
| | - Théo Destang
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea z/g, 20110 Pasaia, Spain
| | - Joana Larreta
- AZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Herrera Kaia, Portualdea z/g, 20110 Pasaia, Spain
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Junaid M, Siddiqui JA, Sadaf M, Liu S, Wang J. Enrichment and dissemination of bacterial pathogens by microplastics in the aquatic environment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 830:154720. [PMID: 35337880 DOI: 10.1016/j.scitotenv.2022.154720] [Citation(s) in RCA: 40] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Revised: 03/16/2022] [Accepted: 03/17/2022] [Indexed: 06/14/2023]
Abstract
Microplastic pollution and associated impacts in the aquatic environment are spreading at an alarming rate worldwide. Plastic waste is increasing in the environment, and microplastics (MPs) are becoming a growing issue because they serve as vectors for pathogen transmission. This is the first comprehensive review that specifically addresses MPs as a source and vector of pathogenic bacteria, mainly associated with genera Vibrio, Pseudomonas, Acinetobacter, and so on, which are discovered to be more abundant on the aquatic plastisphere than that in the surrounding wastewater, freshwater, and marine water ecosystems. The horizontal gene transfer, chemotaxis, and co-selection and cross-selection could be the potential mechanism involved in the enrichment and dissemination of bacterial pathogens through the aquatic plastisphere. Further, bacterial pathogens through aquatic plastisphere can cause various ecological and human health impacts such as disrupted food chain, oxidative stress, tissue damages, disease transmission, microbial dysbiosis, metabolic disorders, among others. Last but not least, future research directions are also described to find answers to the challenging questions about bacterial pathogens in the aquatic plastisphere to ensure the integrity and safety of ecological and human health.
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Affiliation(s)
- Muhammad Junaid
- Joint Laboratory of Guangdong Province and Hong Kong Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, Guangzhou 510641, China
| | - Junaid Ali Siddiqui
- Department of Entomology, South China Agricultural University, Guangzhou 510642, China
| | - Mamona Sadaf
- Knowledge Unit of Business, Economics, Accountancy and Commerce (KUBEAC), University of Management and Technology, Sialkot Campus, 51310, Pakistan
| | - Shulin Liu
- Department of Entomology, South China Agricultural University, Guangzhou 510642, China
| | - Jun Wang
- Joint Laboratory of Guangdong Province and Hong Kong Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, Guangzhou 510641, China; Guangdong Laboratory for Lingnan Modern Agriculture, South China Agricultural University, Guangzhou 510642, China.
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The Occurrence of Microplastics and the Formation of Biofilms by Pathogenic and Opportunistic Bacteria as Threats in Aquaculture. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:ijerph19138137. [PMID: 35805796 PMCID: PMC9266316 DOI: 10.3390/ijerph19138137] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 06/27/2022] [Accepted: 07/01/2022] [Indexed: 02/04/2023]
Abstract
Aquaculture is the most rapidly growing branch of animal production. The efficiency and quality of the produced food depends on sustainable management, water quality, feed prices and the incidence of diseases. Micro- (MP < 5 mm) and nanoplastic (NP < 1000 nm) particles are among the current factors causing serious water pollution. This substance comes solely from products manufactured by humans. MP particles migrate from the terrestrial to the aquatic environment and adversely affect, especially, the health of animals and humans by being a favorable habitat and vector for microbial pathogens and opportunists. More than 30 taxa of pathogens of humans, aquacutural animals and plants, along with opportunistic bacteria, have been detected in plastic-covering biofilm to date. The mobility and durability of the substance, combined with the relatively closed conditions in aquacultural habitats and pathogens’ affinity to the material, make plastic particles a microbiological medium threatening the industry of aquaculture. For this reason, in addition to the fact of plastic accumulation in living organisms, urgent measures should be taken to reduce its influx into the environment. The phenomenon and its implications are related to the concept of one health, wherein the environment, animals and humans affect each other’s fitness.
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Wang K, Lin H, Wang S, Dong X, Sun L, Zhou Q, Chen Y, Su B, Pan Z, Chen B, Gao Y. Species diversity and community structure of microalgae living on microplastics in Luoyuan Bay, China. MARINE POLLUTION BULLETIN 2022; 180:113809. [PMID: 35688065 DOI: 10.1016/j.marpolbul.2022.113809] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2022] [Revised: 05/25/2022] [Accepted: 05/26/2022] [Indexed: 06/15/2023]
Abstract
This study was carried out in Luoyuan Bay in March 2021. The species composition of microalgae community colonizing on microplastics called epimicroplastic microalgae (EMP-MA) was analyzed and compared with planktonic microalgae (PM) community. The species number of EMP-MA community (73) was higher than that of PM community (56). However Simpson Index and Pielou Evenness Index of EMP-MA community were significantly lower than that of PM community (P < 0.05). Although diatom was the most diverse and abundant taxa in both EMP-MA and PM community, their species compositions were significantly different (P < 0.05). Dominant species were also different between the two communities. Moreover, 12 harmful algal species were found in EMP-MA community, which may drift with microplastics and increase the risks of harmful algal blooms (HABs). This study is helpful to reveal the dispersal mechanism of HABs and potential impacts of EMP-MA on marine ecosystem.
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Affiliation(s)
- Kang Wang
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, China; School of Life Sciences, Xiamen University, Xiamen 361102, China
| | - Hui Lin
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, China
| | - Sumin Wang
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, China
| | - Xu Dong
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, China
| | - Lin Sun
- School of Life Sciences, Xiamen University, Xiamen 361102, China
| | - Qianqian Zhou
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, China
| | - Yanghang Chen
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, China
| | - Baosi Su
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, China
| | - Zhong Pan
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, China
| | - Baohong Chen
- Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, China.
| | - Yahui Gao
- School of Life Sciences, Xiamen University, Xiamen 361102, China.
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Kumar M, Kumar R, Chaudhary DR, Jha B. An appraisal of early stage biofilm-forming bacterial community assemblage and diversity in the Arabian Sea, India. MARINE POLLUTION BULLETIN 2022; 180:113732. [PMID: 35594757 DOI: 10.1016/j.marpolbul.2022.113732] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2022] [Revised: 05/01/2022] [Accepted: 05/02/2022] [Indexed: 06/15/2023]
Abstract
The community composition and distribution of early-stage (24 h) biofilm-forming bacteria on two different surfaces (glass slide and polystyrene plastic slide) at three different locations (Diu, Alang and Sikka) were studied using a culture-dependent and next-generation sequencing (NGS) approach in the Arabian Sea, Gujarat, India. The most dominant phyla observed using the NGS approach were the Proteobacteria among the sampling sites. Gammaproteobacteria class dominated both the surfaces among the sites and accounted for 46.7% to 89.2% of total abundance. The culture-dependent analysis showed Proteobacteria and Firmicutes as the dominant phyla on the surfaces within the sampling sites. During the initial colonization, hydrocarbon-degrading bacterial strains have also attached to the surfaces. The outcome of this study would be of great importance for targeting the early stage biofilm-forming and hydrocarbon-degrading bacterial isolates may help to degrade plastic in the marine environment.
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Affiliation(s)
- Madhav Kumar
- CSIR - Central Salt and Marine Chemicals Research Institute, G. B. Bhavnagar, Gujarat 364 002, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India
| | - Raghawendra Kumar
- CSIR - Central Salt and Marine Chemicals Research Institute, G. B. Bhavnagar, Gujarat 364 002, India
| | - Doongar R Chaudhary
- CSIR - Central Salt and Marine Chemicals Research Institute, G. B. Bhavnagar, Gujarat 364 002, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India.
| | - Bhavanath Jha
- CSIR - Central Salt and Marine Chemicals Research Institute, G. B. Bhavnagar, Gujarat 364 002, India.
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Song J, Beule L, Jongmans-Hochschulz E, Wichels A, Gerdts G. The travelling particles: community dynamics of biofilms on microplastics transferred along a salinity gradient. ISME COMMUNICATIONS 2022; 2:35. [PMID: 37938248 PMCID: PMC9723596 DOI: 10.1038/s43705-022-00117-4] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Revised: 03/15/2022] [Accepted: 03/17/2022] [Indexed: 05/28/2023]
Abstract
Microplastics (MP), as novel substrata for microbial colonization within aquatic ecosystems, are a matter of growing concern due to their potential to propagate foreign or invasive species across different environments. MP are known to harbour a diversity of microorganisms, yet little is understood of the dynamics of their biofilms and their capacity to successfully displace these microorganisms across different aquatic ecosystems typically marked by steep salinity gradients. To address this, we performed an in situ sequential incubation experiment to simulate MP transport from riverine to coastal seawaters using synthetic (high-density polyethylene, HDPE and tyre wear, TW) and natural (Wood) substrata. Bacterial communities on incubated particles were compared to each other as well as to those in surrounding waters, and their dynamics along the gradient investigated. All communities differed significantly from each other in their overall structure along the salinity gradient and were shaped by different ecological processes. While HDPE communities were governed by environmental selection, those on TW and Wood were dominated by stochastic events of dispersal and drift. Upon transfer into coastal seawaters, an almost complete turnover was observed among HDPE and TW communities. While synthetic particles displaced a minor proportion of communities across the salinity gradient, some of these comprised putatively pathogenic and resistant taxa. Our findings present an extensive assessment of MP biofilms and their dynamics upon displacement across different aquatic systems, presenting new insights into the role of MP as transport vectors.
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Affiliation(s)
- Jessica Song
- Department of Microbial Ecology, Biologische Anstalt Helgoland, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, 27498, Helgoland, Germany.
| | - Lukas Beule
- Julius Kühn Institute-Federal Research Centre for Cultivated Plants, Institute for Ecological Chemistry, Plant Analysis and Stored Product Protection, Königin-Luise-Strasse 19, 14195, Berlin, Germany
| | - Elanor Jongmans-Hochschulz
- Department of Microbial Ecology, Biologische Anstalt Helgoland, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, 27498, Helgoland, Germany
| | - Antje Wichels
- Department of Microbial Ecology, Biologische Anstalt Helgoland, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, 27498, Helgoland, Germany
| | - Gunnar Gerdts
- Department of Microbial Ecology, Biologische Anstalt Helgoland, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, 27498, Helgoland, Germany
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44
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Li QC, Wang B, Zeng YH, Cai ZH, Zhou J. The Microbial Mechanisms of a Novel Photosensitive Material (Treated Rape Pollen) in Anti-Biofilm Process under Marine Environment. Int J Mol Sci 2022; 23:ijms23073837. [PMID: 35409199 PMCID: PMC8998240 DOI: 10.3390/ijms23073837] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Revised: 03/18/2022] [Accepted: 03/24/2022] [Indexed: 02/01/2023] Open
Abstract
Marine biofouling is a worldwide problem in coastal areas and affects the maritime industry primarily by attachment of fouling organisms to solid immersed surfaces. Biofilm formation by microbes is the main cause of biofouling. Currently, application of antibacterial materials is an important strategy for preventing bacterial colonization and biofilm formation. A natural three-dimensional carbon skeleton material, TRP (treated rape pollen), attracted our attention owing to its visible-light-driven photocatalytic disinfection property. Based on this, we hypothesized that TRP, which is eco-friendly, would show antifouling performance and could be used for marine antifouling. We then assessed its physiochemical characteristics, oxidant potential, and antifouling ability. The results showed that TRP had excellent photosensitivity and oxidant ability, as well as strong anti-bacterial colonization capability under light-driven conditions. Confocal laser scanning microscopy showed that TRP could disperse pre-established biofilms on stainless steel surfaces in natural seawater. The biodiversity and taxonomic composition of biofilms were significantly altered by TRP (p < 0.05). Moreover, metagenomics analysis showed that functional classes involved in the antioxidant system, environmental stress, glucose−lipid metabolism, and membrane-associated functions were changed after TRP exposure. Co-occurrence model analysis further revealed that TRP markedly increased the complexity of the biofilm microbial network under light irradiation. Taken together, these results demonstrate that TRP with light irradiation can inhibit bacterial colonization and prevent initial biofilm formation. Thus, TRP is a potential nature-based green material for marine antifouling.
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Affiliation(s)
- Qing-Chao Li
- Shenzhen Public Platform for Screening and Application of Marine Microbial Resources, Institute for Ocean Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China; (Q.-C.L.); (Y.-H.Z.); (Z.-H.C.)
| | - Bo Wang
- CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China;
| | - Yan-Hua Zeng
- Shenzhen Public Platform for Screening and Application of Marine Microbial Resources, Institute for Ocean Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China; (Q.-C.L.); (Y.-H.Z.); (Z.-H.C.)
| | - Zhong-Hua Cai
- Shenzhen Public Platform for Screening and Application of Marine Microbial Resources, Institute for Ocean Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China; (Q.-C.L.); (Y.-H.Z.); (Z.-H.C.)
| | - Jin Zhou
- Shenzhen Public Platform for Screening and Application of Marine Microbial Resources, Institute for Ocean Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China; (Q.-C.L.); (Y.-H.Z.); (Z.-H.C.)
- Correspondence:
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Microbial Consortiums of Putative Degraders of Low-Density Polyethylene-Associated Compounds in the Ocean. mSystems 2022; 7:e0141521. [PMID: 35229650 PMCID: PMC8941889 DOI: 10.1128/msystems.01415-21] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Polyethylene (PE) is one of the most abundant plastics in the ocean. The development of a biofilm on PE in the ocean has been reported, yet whether some of the biofilm-forming organisms can biodegrade this plastic in the environment remains unknown. Via metagenomics analysis, we taxonomically and functionally analyzed three biofilm communities using low-density polyethylene (LDPE) as their sole carbon source for 2 years. Several of the taxa that increased in relative abundance over time were closely related to known degraders of alkane and other hydrocarbons. Alkane degradation has been proposed to be involved in PE degradation, and most of the organisms increasing in relative abundance over time harbored genes encoding proteins essential in alkane degradation, such as the genes alkB and CYP153, encoding an alkane monooxygenase and a cytochrome P450 alkane hydroxylase, respectively. Weight loss of PE sheets when incubated with these communities and chemical and electron microscopic analyses provided evidence for alteration of the PE surface over time. Taken together, these results provide evidence for the utilization of LDPE-associated compounds by the prokaryotic communities. This report identifies a group of genes potentially involved in the degradation of the LDPE polymeric structure and/or associated plastic additives in the ocean and describes a phylogenetically diverse community of plastic biofilm-dwelling microbes with the potential for utilizing LDPE-associated compounds as carbon and energy source. IMPORTANCE Low-density polyethylene (LDPE) is one of the most used plastics worldwide, and a large portion of it ends up in the ocean. Very little is known about its fate in the ocean and whether it can be biodegraded by microorganisms. By combining 2-year incubations with metagenomics, respiration measurements, and LDPE surface analysis, we identified bacteria and associated genes and metabolic pathways potentially involved in LDPE biodegradation. After 2 years of incubation, two of the microbial communities exhibited very similar taxonomic compositions mediating changes to the LDPE pieces they were incubated with. We provide evidence that there are plastic-biofilm dwelling bacteria in the ocean that might have the potential to degrade LDPE-associated compounds and that alkane degradation pathways might be involved.
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Kaur K, Reddy S, Barathe P, Oak U, Shriram V, Kharat SS, Govarthanan M, Kumar V. Microplastic-associated pathogens and antimicrobial resistance in environment. CHEMOSPHERE 2022; 291:133005. [PMID: 34813845 DOI: 10.1016/j.chemosphere.2021.133005] [Citation(s) in RCA: 30] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Revised: 11/04/2021] [Accepted: 11/18/2021] [Indexed: 06/13/2023]
Abstract
The ubiquitous use of microplastics and their release into the environment especially the water bodies by anthropogenic/industrial activities are the major resources for microplastic contamination. The widespread and often injudicious use of antimicrobial drugs or antibiotics in various sectors including human health and hygiene, agriculture, animal husbandry and food industries are leading to the release of antibiotics into the wastewater/sewage and other water bodies, particularly in urban setups and thus leads to the antimicrobial resistance (AMR) in the microbes. Microplastics are emerging as the hubs as well as effective carriers of these microbial pathogens beside their AMR-genes (ARGs) in marine, freshwater, sewage/wastewater, and urban river ecosystems. These drug resistant bacteria interact with microplastics forming synthetic plastispheres, the ideal niche for biofilm formations which in turn facilitates the transfer of ARGs via horizontal gene transfer and further escalates the occurrence and levels of AMR. Microplastic-associated AMR is an emerging threat for human health and healthcare besides being a challenge for the research community for effective management/address of this menace. In this review, we encompass the increasing prevalence of microplastics in environment, emphasizing mainly on water environments, how they act as centers and vectors of microbial pathogens with their associated bacterial assemblage compositions and ultimately lead to AMR. It further discusses the mechanistic insights on how microplastics act as hosts of biofilms (creating the plastisphere). We have also presented the modern toolbox used for microplastic-biofilm analyses. A review on potential strategies for addressing microplastic-associated AMR is given with recent success stories, challenges and future prospects.
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Affiliation(s)
- Kawaljeet Kaur
- Department of Biotechnology, Modern College of Arts, Science and Commerce, Savitribai Phule Pune University, Ganeshkhind, Pune, 411016, Maharashtra, India
| | - Sagar Reddy
- Department of Botany, Prof. Ramkrishna More College, Savitribai Phule Pune University, Akurdi, Pune, 411016, Maharashtra, India
| | - Pramod Barathe
- Department of Biotechnology, Modern College of Arts, Science and Commerce, Savitribai Phule Pune University, Ganeshkhind, Pune, 411016, Maharashtra, India
| | - Uttara Oak
- Department of Biotechnology, Modern College of Arts, Science and Commerce, Savitribai Phule Pune University, Ganeshkhind, Pune, 411016, Maharashtra, India
| | - Varsha Shriram
- Department of Botany, Prof. Ramkrishna More College, Savitribai Phule Pune University, Akurdi, Pune, 411016, Maharashtra, India
| | - Sanjay S Kharat
- Department of Biotechnology, Modern College of Arts, Science and Commerce, Savitribai Phule Pune University, Ganeshkhind, Pune, 411016, Maharashtra, India
| | - M Govarthanan
- Department of Environmental Engineering, Kyungpook National University, Daehak-ro, Buk-gu, Daegu, 41566, South Korea.
| | - Vinay Kumar
- Department of Biotechnology, Modern College of Arts, Science and Commerce, Savitribai Phule Pune University, Ganeshkhind, Pune, 411016, Maharashtra, India.
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47
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Metcalf R, Oliver DM, Moresco V, Quilliam RS. Quantifying the importance of plastic pollution for the dissemination of human pathogens: The challenges of choosing an appropriate 'control' material. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 810:152292. [PMID: 34896491 DOI: 10.1016/j.scitotenv.2021.152292] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Revised: 11/26/2021] [Accepted: 12/05/2021] [Indexed: 06/14/2023]
Abstract
Discarded plastic wastes in the environment are serious challenges for sustainable waste management and for the delivery of environmental and public health. Plastics in the environment become rapidly colonised by microbial biofilm, and importantly this so-called 'plastisphere' can also support, or even enrich human pathogens. The plastisphere provides a protective environment and could facilitate the increased survival, transport and dissemination of human pathogens and thus increase the likelihood of pathogens coming into contact with humans, e.g., through direct exposure at beaches or bathing waters. However, much of our understanding about the relative risks associated with human pathogens colonising environmental plastic pollution has been inferred from taxonomic identification of pathogens in the plastisphere, or laboratory experiments on the relative behaviour of plastics colonised by human pathogens. There is, therefore, a pressing need to understand whether plastics play a greater role in promoting the survival and dispersal of human pathogens within the environment compared to other substrates (either natural materials or other pollutants). In this paper, we consider all published studies that have detected human pathogenic bacteria on the surfaces of environmental plastic pollution and critically discuss the challenges of selecting an appropriate control material for plastisphere experiments. Whilst it is clear there is no 'perfect' control material for all plastisphere studies, understanding the context-specific role plastics play compared to other substrates for transferring human pathogens through the environment is important for quantifying the potential risk that colonised plastic pollution may have for environmental and public health.
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Affiliation(s)
- Rebecca Metcalf
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK.
| | - David M Oliver
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
| | - Vanessa Moresco
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
| | - Richard S Quilliam
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
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48
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Nearing JT, Douglas GM, Hayes MG, MacDonald J, Desai DK, Allward N, Jones CMA, Wright RJ, Dhanani AS, Comeau AM, Langille MGI. Microbiome differential abundance methods produce different results across 38 datasets. Nat Commun 2022; 13:342. [PMID: 35039521 PMCID: PMC8763921 DOI: 10.1038/s41467-022-28034-z] [Citation(s) in RCA: 247] [Impact Index Per Article: 123.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Accepted: 01/04/2022] [Indexed: 12/12/2022] Open
Abstract
Identifying differentially abundant microbes is a common goal of microbiome studies. Multiple methods are used interchangeably for this purpose in the literature. Yet, there are few large-scale studies systematically exploring the appropriateness of using these tools interchangeably, and the scale and significance of the differences between them. Here, we compare the performance of 14 differential abundance testing methods on 38 16S rRNA gene datasets with two sample groups. We test for differences in amplicon sequence variants and operational taxonomic units (ASVs) between these groups. Our findings confirm that these tools identified drastically different numbers and sets of significant ASVs, and that results depend on data pre-processing. For many tools the number of features identified correlate with aspects of the data, such as sample size, sequencing depth, and effect size of community differences. ALDEx2 and ANCOM-II produce the most consistent results across studies and agree best with the intersect of results from different approaches. Nevertheless, we recommend that researchers should use a consensus approach based on multiple differential abundance methods to help ensure robust biological interpretations. Many microbiome differential abundance methods are available, but it lacks systematic comparison among them. Here, the authors compare the performance of 14 differential abundance testing methods on 38 16S rRNA gene datasets with two sample groups, and show ALDEx2 and ANCOM-II produce the most consistent results.
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Affiliation(s)
- Jacob T Nearing
- Department of Microbiology and Immunology, Dalhousie University, Halifax, NS, Canada.
| | - Gavin M Douglas
- Department of Microbiology and Immunology, Dalhousie University, Halifax, NS, Canada
| | - Molly G Hayes
- Department of Mathematics and Statistics, Dalhousie University, Halifax, NS, Canada
| | - Jocelyn MacDonald
- Department of Computer Science, Dalhousie University, Halifax, NS, Canada
| | - Dhwani K Desai
- Integrated Microbiome Resource, Dalhousie University, Halifax, NS, Canada
| | - Nicole Allward
- Department of Civil and Resource Engineering, Dalhousie University, Halifax, NS, Canada
| | - Casey M A Jones
- Department of Pharmacology, Dalhousie University, Halifax, NS, Canada
| | - Robyn J Wright
- Department of Pharmacology, Dalhousie University, Halifax, NS, Canada
| | - Akhilesh S Dhanani
- Integrated Microbiome Resource, Dalhousie University, Halifax, NS, Canada
| | - André M Comeau
- Integrated Microbiome Resource, Dalhousie University, Halifax, NS, Canada
| | - Morgan G I Langille
- Integrated Microbiome Resource, Dalhousie University, Halifax, NS, Canada.,Department of Pharmacology, Dalhousie University, Halifax, NS, Canada
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49
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Zhang SJ, Zeng YH, Zhu JM, Cai ZH, Zhou J. The structure and assembly mechanisms of plastisphere microbial community in natural marine environment. JOURNAL OF HAZARDOUS MATERIALS 2022; 421:126780. [PMID: 34358974 DOI: 10.1016/j.jhazmat.2021.126780] [Citation(s) in RCA: 81] [Impact Index Per Article: 40.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Revised: 07/16/2021] [Accepted: 07/27/2021] [Indexed: 05/20/2023]
Abstract
The microbial colonization profiles on microplastics (MPs) in marine environments have recently sparked global interest. However, many studies have characterized plastisphere microbiomes without considering the ecological processes that underly microbiome assembly. Here, we carried out a three-timepoint exposure experiment at 1-, 4-, and 8-week and investigated the colonization dynamics for polyethylene, polypropylene, polystyrene, polyvinyl chloride, and acrylonitrile-butadiene-styrene MP pellets in natural coastal water. Using high-throughput sequencing of 16S rRNA, we found diversity and evenness were higher (p < 0.05) in the plastisphere communities than those in seawater, and microorganisms colonizing were co-influenced by environmental factors, polymer types, and exposure duration. Functional potential and co-occurrence network analysis revealed that MP exposure enriched the xenobiotic biodegradation potential and reduced the complexity of the MP microbial network. Simultaneously, null-model analyses indicated that stochastic processes contributed a bigger role than deterministic processes in shaping plastisphere microbial community structure with dispersal limitations contributing to a greater extent to microbial succession trajectories. These results implied the plastic surface had a more important role as a raft onto which microbes attach rather than selectively recruiting plastic-specific microbial colonizers. Our work strengthened the understanding of the ecological mechanisms by which microbial community patterns are controlled during colonization by plastic-associated microbes.
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Affiliation(s)
- Sheng-Jie Zhang
- Shenzhen Public Platform for Screening & Application of Marine Microbial Resources, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, PR China
| | - Yan-Hua Zeng
- Shenzhen Public Platform for Screening & Application of Marine Microbial Resources, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, PR China
| | - Jian-Ming Zhu
- Shenzhen Public Platform for Screening & Application of Marine Microbial Resources, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, PR China
| | - Zhong-Hua Cai
- Shenzhen Public Platform for Screening & Application of Marine Microbial Resources, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, PR China; Institute for Ocean Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, PR China
| | - Jin Zhou
- Shenzhen Public Platform for Screening & Application of Marine Microbial Resources, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, PR China; Institute for Ocean Engineering, Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, PR China.
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Chattopadhyay I. Role of microbiome and biofilm in environmental plastic degradation. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2022. [DOI: 10.1016/j.bcab.2021.102263] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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