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Aiduang W, Jatuwong K, Luangharn T, Jinanukul P, Thamjaree W, Teeraphantuvat T, Waroonkun T, Lumyong S. A Review Delving into the Factors Influencing Mycelium-Based Green Composites (MBCs) Production and Their Properties for Long-Term Sustainability Targets. Biomimetics (Basel) 2024; 9:337. [PMID: 38921217 PMCID: PMC11202202 DOI: 10.3390/biomimetics9060337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 05/12/2024] [Accepted: 05/26/2024] [Indexed: 06/27/2024] Open
Abstract
Mycelium-based green composites (MBCs) represent an eco-friendly material innovation with vast potential across diverse applications. This paper provides a thorough review of the factors influencing the production and properties of MBCs, with a particular focus on interdisciplinary collaboration and long-term sustainability goals. It delves into critical aspects such as fungal species selection, substrate type selection, substrate preparation, optimal conditions, dehydrating methods, post-processing techniques, mold design, sterilization processes, cost comparison, key recommendations, and other necessary factors. Regarding fungal species selection, the paper highlights the significance of considering factors like mycelium species, decay type, hyphal network systems, growth rate, and bonding properties in ensuring the safety and suitability of MBCs fabrication. Substrate type selection is discussed, emphasizing the importance of chemical characteristics such as cellulose, hemicellulose, lignin content, pH, organic carbon, total nitrogen, and the C: N ratio in determining mycelium growth and MBC properties. Substrate preparation methods, optimal growth conditions, and post-processing techniques are thoroughly examined, along with their impacts on MBCs quality and performance. Moreover, the paper discusses the importance of designing molds and implementing effective sterilization processes to ensure clean environments for mycelium growth. It also evaluates the costs associated with MBCs production compared to traditional materials, highlighting potential cost savings and economic advantages. Additionally, the paper provides key recommendations and precautions for improving MBC properties, including addressing fungal strain degeneration, encouraging research collaboration, establishing biosecurity protocols, ensuring regulatory compliance, optimizing storage conditions, implementing waste management practices, conducting life cycle assessments, and suggesting parameters for desirable MBC properties. Overall, this review offers valuable insights into the complex interplay of factors influencing MBCs production and provides guidance for optimizing processes to achieve sustainable, high-quality composites for diverse applications.
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Affiliation(s)
- Worawoot Aiduang
- Office of Research Administration, Chiang Mai University, Chiang Mai 50200, Thailand; (W.A.); (K.J.)
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Kritsana Jatuwong
- Office of Research Administration, Chiang Mai University, Chiang Mai 50200, Thailand; (W.A.); (K.J.)
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Thatsanee Luangharn
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand;
| | - Praween Jinanukul
- Faculty of Architecture, Chiang Mai University, Chiang Mai 50200, Thailand; (P.J.); (T.W.)
| | - Wandee Thamjaree
- Department of Physics and Materials Science, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand;
| | | | - Tanut Waroonkun
- Faculty of Architecture, Chiang Mai University, Chiang Mai 50200, Thailand; (P.J.); (T.W.)
| | - Saisamorn Lumyong
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand
- Academy of Science, The Royal Society of Thailand, Bangkok 10300, Thailand
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Wei X, Liu S, Xie C, Fang W, Deng C, Wen Z, Ye D, Jie D. Nondestructive detection of Pleurotus geesteranus strain degradation based on micro-hyperspectral imaging and machine learning. FRONTIERS IN PLANT SCIENCE 2023; 14:1260625. [PMID: 38126009 PMCID: PMC10731295 DOI: 10.3389/fpls.2023.1260625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 11/20/2023] [Indexed: 12/23/2023]
Abstract
In the production of edible fungi, the use of degraded strains in cultivation incurs significant economic losses. Based on micro-hyperspectral imaging and machine learning, this study proposes an early, nondestructive method for detecting different degradation degrees of Pleurotus geesteranus strains. In this study, an undegraded strain and three different degradation-level strains were used. During the mycelium growth, 600 micro-hyperspectral images were obtained. Based on the average transmittance spectra of the region of interest (ROI) in the range of 400-1000 nm and images at feature bands, feature spectra and images were extracted using the successive projections algorithm (SPA) and the deep residual network (ResNet50), respectively. Different feature input combinations were utilized to establish support vector machine (SVM) classification models. Based on the results, the spectra-input-based model performed better than the image-input-based model, and feature extraction improved the classification results for both models. The feature-fusion-based SPA+ResNet50-SVM model was the best; the accuracy rate of the test set was up to 90.8%, which was better than the accuracy rates of SPA-SVM (83.3%) and ResNet50-SVM (80.8%). This study proposes a nondestructive method to detect the degradation of Pleurotus geesteranus strains, which could further inspire new methods for the phenotypic identification of edible fungi.
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Affiliation(s)
- Xuan Wei
- College of Mechanical and Electrical Engineering, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Shiyang Liu
- College of Mechanical and Electrical Engineering, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Chuangyuan Xie
- College of Mechanical and Electrical Engineering, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Wei Fang
- College of Future Technology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Chanjuan Deng
- College of Future Technology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Zhiqiang Wen
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Dapeng Ye
- College of Mechanical and Electrical Engineering, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Dengfei Jie
- College of Mechanical and Electrical Engineering, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
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Vu TX, Thai HD, Dinh BHT, Nguyen HT, Tran HTP, Bui KLT, Tran TB, Pham HT, Mai LTD, Le DH, Nguyen HQ, Tran VT. Effects of MAT1-2 Spore Ratios on Fruiting Body Formation and Degeneration in the Heterothallic Fungus Cordyceps militaris. J Fungi (Basel) 2023; 9:971. [PMID: 37888227 PMCID: PMC10607669 DOI: 10.3390/jof9100971] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Revised: 09/25/2023] [Accepted: 09/25/2023] [Indexed: 10/28/2023] Open
Abstract
The medicinal mushroom Cordyceps militaris is widely exploited in traditional medicine and nutraceuticals in Asian countries. However, fruiting body production in C. militaris is facing degeneration through cultivation batches, and the molecular mechanism of this phenomenon remains unclear. This study showed that fruiting body formation in three different C. militaris strains, namely G12, B12, and HQ1, severely declined after three successive culturing generations using the spore isolation method. PCR analyses revealed that these strains exist as heterokaryons and possess both the mating-type loci, MAT1-1 and MAT1-2. Further, monokaryotic isolates carrying MAT1-1 or MAT1-2 were successfully separated from the fruiting bodies of all three heterokaryotic strains. A spore combination of the MAT1-1 monokaryotic isolate and the MAT1-2 monokaryotic isolate promoted fruiting body formation, while the single monokaryotic isolates could not do that themselves. Notably, we found that changes in ratios of the MAT1-2 spores strongly influenced fruiting body formation in these strains. When the ratios of the MAT1-2 spores increased to more than 15 times compared to the MAT1-1 spores, the fruiting body formation decreased sharply. In contrast, when MAT1-1 spores were increased proportionally, fruiting body formation was only slightly reduced. Our study also proposes a new solution to mitigate the degeneration in the heterokaryotic C. militaris strains caused by successive culturing generations.
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Affiliation(s)
- Tao Xuan Vu
- National Key Laboratory of Enzyme and Protein Technology, University of Science, Vietnam National University, Hanoi (VNU), 334 Nguyen Trai, Thanh Xuan, Hanoi 100000, Vietnam; (T.X.V.); (H.-D.T.)
- Center for Experimental Biology, National Center for Technological Progress, Ministry of Science and Technology, C6 Thanh Xuan Bac, Thanh Xuan, Hanoi 100000, Vietnam
| | - Hanh-Dung Thai
- National Key Laboratory of Enzyme and Protein Technology, University of Science, Vietnam National University, Hanoi (VNU), 334 Nguyen Trai, Thanh Xuan, Hanoi 100000, Vietnam; (T.X.V.); (H.-D.T.)
| | - Bich-Hang Thi Dinh
- National Key Laboratory of Enzyme and Protein Technology, University of Science, Vietnam National University, Hanoi (VNU), 334 Nguyen Trai, Thanh Xuan, Hanoi 100000, Vietnam; (T.X.V.); (H.-D.T.)
| | - Huong Thi Nguyen
- National Key Laboratory of Enzyme and Protein Technology, University of Science, Vietnam National University, Hanoi (VNU), 334 Nguyen Trai, Thanh Xuan, Hanoi 100000, Vietnam; (T.X.V.); (H.-D.T.)
| | - Huyen Thi Phuong Tran
- National Key Laboratory of Enzyme and Protein Technology, University of Science, Vietnam National University, Hanoi (VNU), 334 Nguyen Trai, Thanh Xuan, Hanoi 100000, Vietnam; (T.X.V.); (H.-D.T.)
| | - Khanh-Linh Thi Bui
- National Key Laboratory of Enzyme and Protein Technology, University of Science, Vietnam National University, Hanoi (VNU), 334 Nguyen Trai, Thanh Xuan, Hanoi 100000, Vietnam; (T.X.V.); (H.-D.T.)
| | - Tram Bao Tran
- Center for Experimental Biology, National Center for Technological Progress, Ministry of Science and Technology, C6 Thanh Xuan Bac, Thanh Xuan, Hanoi 100000, Vietnam
| | - Hien Thanh Pham
- Faculty of Biology, University of Science, Vietnam National University, Hanoi (VNU), 334 Nguyen Trai, Thanh Xuan, Hanoi 100000, Vietnam
| | - Linh Thi Dam Mai
- Faculty of Biology, University of Science, Vietnam National University, Hanoi (VNU), 334 Nguyen Trai, Thanh Xuan, Hanoi 100000, Vietnam
| | - Diep Hong Le
- Faculty of Biology, University of Science, Vietnam National University, Hanoi (VNU), 334 Nguyen Trai, Thanh Xuan, Hanoi 100000, Vietnam
| | - Huy Quang Nguyen
- National Key Laboratory of Enzyme and Protein Technology, University of Science, Vietnam National University, Hanoi (VNU), 334 Nguyen Trai, Thanh Xuan, Hanoi 100000, Vietnam; (T.X.V.); (H.-D.T.)
- Faculty of Biology, University of Science, Vietnam National University, Hanoi (VNU), 334 Nguyen Trai, Thanh Xuan, Hanoi 100000, Vietnam
| | - Van-Tuan Tran
- National Key Laboratory of Enzyme and Protein Technology, University of Science, Vietnam National University, Hanoi (VNU), 334 Nguyen Trai, Thanh Xuan, Hanoi 100000, Vietnam; (T.X.V.); (H.-D.T.)
- Faculty of Biology, University of Science, Vietnam National University, Hanoi (VNU), 334 Nguyen Trai, Thanh Xuan, Hanoi 100000, Vietnam
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Jiang Y, Wang J. The Registration Situation and Use of Mycopesticides in the World. J Fungi (Basel) 2023; 9:940. [PMID: 37755048 PMCID: PMC10532538 DOI: 10.3390/jof9090940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 09/13/2023] [Accepted: 09/14/2023] [Indexed: 09/28/2023] Open
Abstract
Mycopesticides are living preparations that use fungal cells, such as spores and hyphae, as active ingredients. They mainly include mycoinsecticides, mycofungicides, mycoherbicides and nematophagous fungi. The utilization of fungi for controlling agricultural pests can be traced back to approximately 1880, when entomopathogenic fungi were initially employed for this purpose. However, it was not until 1965 that the world's first mycopesticide, Beauveria bassiana, was registered as Boverin® in the former Soviet Union. In past decades, numerous novel mycopesticides have been developed for their lower R&D costs, as well as the environmentally friendly and safe nature. In this review, we investigated the mycopesticides situation of registration in USA, EU, China, Canada and Australia. Superisingly, it was found that the registered mycopesticides are extremely raised in recent years. Currently, the insecticides, fungicides (nematocides) and herbicides were respectively registered 27, 53 and 8 fungal strains. This paper also analyzes the main problems currently faced by mycopesticides and offers suggestions for their future development.
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Affiliation(s)
- Yali Jiang
- College of Plant Protection, South China Agricultural University, Guangzhou 510642, China;
| | - Jingjing Wang
- College of Plant Protection, South China Agricultural University, Guangzhou 510642, China;
- College of Horticulture, South China Agricultural University, Guangzhou 510642, China
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Lin H, Li P, Ma L, Lai S, Sun S, Hu K, Zhang L. Analysis and modification of central carbon metabolism in Hypsizygus marmoreus for improving mycelial growth performance and fruiting body yield. Front Microbiol 2023; 14:1233512. [PMID: 37560516 PMCID: PMC10407233 DOI: 10.3389/fmicb.2023.1233512] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 07/03/2023] [Indexed: 08/11/2023] Open
Abstract
Hypsizygus marmoreus is one of the main industrially cultivated varieties of edible fungi, with a delicious taste and high nutritional value. However, the long harvest period of 130-150 days greatly limits its large-scale expansion. This study aimed to investigate the effects of central carbon metabolism (CCM) on the mycelial growth performance and fruiting body formation of H. marmoreus. Nine edible fungi with different harvest periods were collected and used to evaluate their intracellular carbon metabolic differences in the CCM, which revealed that the imbalanced distribution of intracellular carbon metabolic levels in the CCM of H. marmoreus might be one of the key factors resulting in a slow mycelial growth rate and a long harvest period. Further analysis by three strategies, including metabolomics, adaptation of different carbon sources, and chemical interference, confirmed that low carbon flux into the pentose phosphate pathway (PPP) limited the supply of raw materials, reduced power, and thus influenced the mycelial growth of H. marmoreus. Furthermore, four transformants with increased expression levels of glucose-6-phosphate dehydrogenase (G6PDH), a key rate-limiting enzyme in the PPP of H. marmoreus, were developed and showed more extracellular soluble protein secretion and higher sugar assimilation rates, as well as improved mycelial growth rates in bottle substrate mixtures. Finally, cultivation experiments indicated that the maturation periods of the fruiting body with ~4-5 days in advance and the maximum fruiting body yield of 574.8 g per bag with an increase of 7.4% were achieved by improving the G6PDH expression level of the PPP in H. marmoreus. This study showed that CCM played an important role in the mycelial growth and development of H. marmoreus, which provided new insights for future advancements in cultivating and breeding edible fungi.
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Affiliation(s)
- Hui Lin
- Department of Bioengineering, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
- Institute of Edible Fungi, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, China
| | - Pengfei Li
- Department of Bioengineering, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Lu Ma
- Institute of Edible Fungi, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, China
| | - Shufang Lai
- Fujian Edible Fungus Technology Promotion General Station, Fuzhou, Fujian, China
| | - Shujing Sun
- Department of Bioengineering, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Kaihui Hu
- Department of Bioengineering, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Liaoyuan Zhang
- Department of Bioengineering, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
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6
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Zhao F, Wang Q, An X, Tan Q, Yun J, Zhang Y. Oxidative damage from repeated tissue isolation for subculturing causes degeneration in Volvariella volvacea. Front Microbiol 2023; 14:1210496. [PMID: 37547686 PMCID: PMC10397519 DOI: 10.3389/fmicb.2023.1210496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2023] [Accepted: 07/05/2023] [Indexed: 08/08/2023] Open
Abstract
The fungal fruiting body is the organized mycelium. Tissue isolation and mycelium succession are common methods of fungal species purification and rejuvenation in the production of edible mushrooms. However, repeated succession increases strain degeneration. In this study, we examined the effect of repeated tissue isolation from Volvariella volvacea fruitbodies on the occurrence of degeneration. The results showed that less than four times in succession improved production capacity, however, after 12 successions, the traits indicating strain degeneration were apparent. For instance, the density of aerophytic hyphae, hyphal growth rate and hyphal biomass were gradually reduced, while the hyphae branching was increased. Also, other degenerative traits such as prolonged production cycles and decreased biological efficiency became evident. In particular, after 19 successions, the strain degeneration became so severe no fruiting bodies were produces anymore. Meanwhile, with the increase in successions, the antioxidant enzyme activity decreased, reactive oxygen species (ROS) increased, the number of nuclei decreased, and the mitochondrial membrane potential decreased along with morphological changes in the mitochondria. This study showed that repeated tissue isolation increased oxidative damage in the succession strain due to the accumulation of ROS, causing cellular senescence, in turn, degeneration in V. volvacea strain.
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Affiliation(s)
- Fengyun Zhao
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
| | - Qiaoli Wang
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
- Kangle County Special Agricultural Development Center, Linxia, Gansu, China
| | - XueMing An
- Lanzhou Institute of Biological Products Limited Liability Company, Lanzhou, Gansu, China
| | - Qiangfei Tan
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
| | - Jianmin Yun
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
| | - Yubin Zhang
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
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Zhao F, Liu X, Chen C, Cheng Z, Wang W, Yun J. Successive mycelial subculturing decreased lignocellulase activity and increased ROS accumulation in Volvariella volvacea. Front Microbiol 2022; 13:997485. [PMID: 36187940 PMCID: PMC9520666 DOI: 10.3389/fmicb.2022.997485] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Accepted: 08/25/2022] [Indexed: 11/23/2022] Open
Abstract
Strain degradation is a common problem in many artificially-cultivated edible mushrooms. As a fungus with poor tolerance to low-temperature, Volvariella volvacea cannot delay its degradation by long-term low temperature storage like other fungi, so its degradation is particularly severe, which hinders industrial applications. Periodic mycelial subculture is a common storage method for V. volvacea, but excessive subculturing can also lead to strain degeneration. After 20 months of continuous subculturing every 3 days, V. volvacea strains S1–S20 were obtained, and their characteristics throughout the subculture process were analyzed. With increasing number of subculture, the growth rate, mycelial biomass, the number of fruiting bodies and biological efficiency gradually decreased while the production cycle and the time to primordium formation was lengthened. Strains S13–S20, obtained after 13–20 months of mycelial subculturing, also lacked the ability to produce fruiting bodies during cultivation experiments. Determination of reactive oxygen species (ROS) content as well as enzyme activity showed that decreased lignocellulase activity, along with excessive accumulation of ROS, was concomitant with the subculture-associated degeneration of V. volvacea. Reverse transcription polymerase chain reaction (RT-PCR) was eventually used to analyze the gene expression for lignocellulase and antioxidant enzymes in subcultured V. volvacea strains, with the results found to be consistent with prior observations regarding enzyme activities. These findings could form the basis of further studies on the degeneration mechanism of V. volvacea and other fungi.
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Affiliation(s)
- Fengyun Zhao
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
- *Correspondence: Fengyun Zhao,
| | - Xiaoxia Liu
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
- Higher Vocational College, Shaanxi institute of international trade and Commerce, Xi’an, China
| | - Chao Chen
- Sinograin Chengdu Storage Research Institute Co. Ltd, Chengdu, China
| | - Zhihong Cheng
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
| | - Wenpei Wang
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
| | - Jianmin Yun
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
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Pérez G, Lopez-Moya F, Chuina E, Ibañez-Vea M, Garde E, López-Llorca LV, Pisabarro AG, Ramírez L. Strain Degeneration in Pleurotus ostreatus: A Genotype Dependent Oxidative Stress Process Which Triggers Oxidative Stress, Cellular Detoxifying and Cell Wall Reshaping Genes. J Fungi (Basel) 2021; 7:jof7100862. [PMID: 34682283 PMCID: PMC8537115 DOI: 10.3390/jof7100862] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 10/08/2021] [Accepted: 10/09/2021] [Indexed: 12/13/2022] Open
Abstract
Strain degeneration has been defined as a decrease or loss in the yield of important commercial traits resulting from subsequent culture, which ultimately leads to Reactive Oxygen Species (ROS) production. Pleurotus ostreatus is a lignin-producing nematophagous edible mushroom. Mycelia for mushroom production are usually maintained in subsequent culture in solid media and frequently show symptoms of strain degeneration. The dikaryotic strain P. ostreatus (DkN001) has been used in our lab as a model organism for different purposes. Hence, different tools have been developed to uncover genetic and molecular aspects of this fungus. In this work, strain degeneration was studied in a full-sib monokaryotic progeny of the DkN001 strain with fast (F) and slow (S) growth rates by using different experimental approaches (light microscopy, malondialdehyde levels, whole-genome transcriptome analysis, and chitosan effect on monokaryotic mycelia). The results obtained showed that: (i) strain degeneration in P. ostreatus is linked to oxidative stress, (ii) the oxidative stress response in monokaryons is genotype dependent, (iii) stress and detoxifying genes are highly expressed in S monokaryons with symptoms of strain degeneration, (iv) chitosan addition to F and S monokaryons uncovered the constitutive expression of both oxidative stress and cellular detoxifying genes in S monokaryon strains which suggest their adaptation to oxidative stress, and (v) the overexpression of the cell wall genes, Uap1 and Cda1, in S monokaryons with strain degeneration phenotype indicates cell wall reshaping and the activation of High Osmolarity Glycerol (HOG) and Cell Wall Integrity (CWI) pathways. These results could constitute a hallmark for mushroom producers to distinguish strain degeneration in commercial mushrooms.
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Affiliation(s)
- Gumer Pérez
- Genetics, Genomics and Microbiology Research Group, Institute for Multidisciplinary Research in Applied Biology (IMAB), Public University of Navarre (UPNA), 31006 Pamplona, Spain; (G.P.); (E.C.); (M.I.-V.); (E.G.); (A.G.P.)
| | - Federico Lopez-Moya
- Laboratory of Plant Pathology, Department of Marine Sciences and Applied Biology, University of Alicante, 03690 Alicante, Spain; (F.L.-M.); (L.V.L.-L.)
| | - Emilia Chuina
- Genetics, Genomics and Microbiology Research Group, Institute for Multidisciplinary Research in Applied Biology (IMAB), Public University of Navarre (UPNA), 31006 Pamplona, Spain; (G.P.); (E.C.); (M.I.-V.); (E.G.); (A.G.P.)
| | - María Ibañez-Vea
- Genetics, Genomics and Microbiology Research Group, Institute for Multidisciplinary Research in Applied Biology (IMAB), Public University of Navarre (UPNA), 31006 Pamplona, Spain; (G.P.); (E.C.); (M.I.-V.); (E.G.); (A.G.P.)
| | - Edurne Garde
- Genetics, Genomics and Microbiology Research Group, Institute for Multidisciplinary Research in Applied Biology (IMAB), Public University of Navarre (UPNA), 31006 Pamplona, Spain; (G.P.); (E.C.); (M.I.-V.); (E.G.); (A.G.P.)
| | - Luis V. López-Llorca
- Laboratory of Plant Pathology, Department of Marine Sciences and Applied Biology, University of Alicante, 03690 Alicante, Spain; (F.L.-M.); (L.V.L.-L.)
| | - Antonio G. Pisabarro
- Genetics, Genomics and Microbiology Research Group, Institute for Multidisciplinary Research in Applied Biology (IMAB), Public University of Navarre (UPNA), 31006 Pamplona, Spain; (G.P.); (E.C.); (M.I.-V.); (E.G.); (A.G.P.)
| | - Lucía Ramírez
- Genetics, Genomics and Microbiology Research Group, Institute for Multidisciplinary Research in Applied Biology (IMAB), Public University of Navarre (UPNA), 31006 Pamplona, Spain; (G.P.); (E.C.); (M.I.-V.); (E.G.); (A.G.P.)
- Correspondence:
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Zhu W, Hu J, Chi J, Li Y, Yang B, Hu W, Chen F, Xu C, Chai L, Bao Y. Label-Free Proteomics Reveals the Molecular Mechanism of Subculture Induced Strain Degeneration and Discovery of Indicative Index for Degeneration in Pleurotus ostreatus. Molecules 2020; 25:molecules25214920. [PMID: 33114310 PMCID: PMC7660624 DOI: 10.3390/molecules25214920] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2020] [Revised: 10/13/2020] [Accepted: 10/19/2020] [Indexed: 11/16/2022] Open
Abstract
Pleurotus ostreatus is one of the widely cultivated edible fungi across the world. Mycelial subculture is an indispensable part in the process of cultivation and production for all kinds of edible fungi. However, successive subcultures usually lead to strain degeneration. The degenerated strains usually have a decrease in stress resistance, yield, and an alteration in fruiting time, which will subsequently result in tremendous economic loss. Through proteomic analysis, we identified the differentially expressed proteins (DEPs) in the mycelium of Pleurotus ostreatus from different subcultured generations. We found that the DNA damage repair system, especially the double-strand breaks (DSBs), repairs via homologous recombination, was impaired in the subcultured mycelium, and gradual accumulation of the DSBs would lead to the strain degeneration after successive subculture. The TUNEL assay further confirmed our finding about the DNA breaks in the subcultured mycelium. Interestingly, the enzyme activity of laccase, carboxylic ester hydrolase, α-galactosidase, and catalase directly related to passage number could be used as the characteristic index for strain degeneration determination. Our results not only reveal for the first time at the molecular level that genomic instability is the cause of degeneration, but also provide an applicable approach for monitoring strain degeneration in process of edible fungi cultivation and production.
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Affiliation(s)
- Weiwei Zhu
- School of Bioengineering, Dalian University of Technology, Dalian 116024, China;
- Microbial Research Institute of Liaoning Province, Chaoyang 122000, China; (J.C.); (Y.L.); (F.C.); (C.X.); (L.C.)
| | - Jinbo Hu
- Laboratory of Photosynthesis and Environment, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China; (J.H.); (B.Y.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jingliang Chi
- Microbial Research Institute of Liaoning Province, Chaoyang 122000, China; (J.C.); (Y.L.); (F.C.); (C.X.); (L.C.)
| | - Yang Li
- Microbial Research Institute of Liaoning Province, Chaoyang 122000, China; (J.C.); (Y.L.); (F.C.); (C.X.); (L.C.)
| | - Bing Yang
- Laboratory of Photosynthesis and Environment, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China; (J.H.); (B.Y.)
| | - Wenli Hu
- Core Facility Center, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China;
| | - Fei Chen
- Microbial Research Institute of Liaoning Province, Chaoyang 122000, China; (J.C.); (Y.L.); (F.C.); (C.X.); (L.C.)
| | - Chong Xu
- Microbial Research Institute of Liaoning Province, Chaoyang 122000, China; (J.C.); (Y.L.); (F.C.); (C.X.); (L.C.)
| | - Linshan Chai
- Microbial Research Institute of Liaoning Province, Chaoyang 122000, China; (J.C.); (Y.L.); (F.C.); (C.X.); (L.C.)
| | - Yongming Bao
- School of Bioengineering, Dalian University of Technology, Dalian 116024, China;
- School of Ocean Science and Technology, Dalian University of Technology, Panjin 124021, China
- Correspondence: ; Tel.: +86-427-2631777; Fax: +86-411-84706365
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