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Hanišáková N, Vítězová M, Vítěz T, Kushkevych I, Kotrlová E, Novák D, Lochman J, Zavada R. Microbiological insight into various underground gas storages in Vienna Basin focusing on methanogenic Archaea. Front Microbiol 2023; 14:1293506. [PMID: 38188570 PMCID: PMC10771303 DOI: 10.3389/fmicb.2023.1293506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Accepted: 11/21/2023] [Indexed: 01/09/2024] Open
Abstract
In recent years, there has been a growing interest in extending the potential of underground gas storage (UGS) facilities to hydrogen and carbon dioxide storage. However, this transition to hydrogen storage raises concerns regarding potential microbial reactions, which could convert hydrogen into methane. It is crucial to gain a comprehensive understanding of the microbial communities within any UGS facilities designated for hydrogen storage. In this study, underground water samples and water samples from surface technologies from 7 different UGS objects located in the Vienna Basin were studied using both molecular biology methods and cultivation methods. Results from 16S rRNA sequencing revealed that the proportion of archaea in the groundwater samples ranged from 20 to 58%, with methanogens being the predominant. Some water samples collected from surface technologies contained up to 87% of methanogens. Various species of methanogens were isolated from individual wells, including Methanobacterium sp., Methanocalculus sp., Methanolobus sp. or Methanosarcina sp. We also examined water samples for the presence of sulfate-reducing bacteria known to be involved in microbially induced corrosion and identified species of the genus Desulfovibrio in the samples. In the second part of our study, we contextualized our data by comparing it to available sequencing data from terrestrial subsurface environments worldwide. This allowed us to discern patterns and correlations between different types of underground samples based on environmental conditions. Our findings reveal presence of methanogens in all analyzed groups of underground samples, which suggests the possibility of unintended microbial hydrogen-to-methane conversion and the associated financial losses. Nevertheless, the prevalence of methanogens in our results also highlights the potential of the UGS environment, which can be effectively leveraged as a bioreactor for the conversion of hydrogen into methane, particularly in the context of Power-to-Methane technology.
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Affiliation(s)
- Nikola Hanišáková
- Section of Microbiology, Department of Experimental Biology, Faculty of Science, Masaryk University, Brno, Czechia
| | - Monika Vítězová
- Section of Microbiology, Department of Experimental Biology, Faculty of Science, Masaryk University, Brno, Czechia
| | - Tomáš Vítěz
- Section of Microbiology, Department of Experimental Biology, Faculty of Science, Masaryk University, Brno, Czechia
- Department of Agricultural, Food and Environmental Engineering, Faculty of AgriSciences, Mendel University in Brno, Brno, Czechia
| | - Ivan Kushkevych
- Section of Microbiology, Department of Experimental Biology, Faculty of Science, Masaryk University, Brno, Czechia
| | - Eva Kotrlová
- Section of Microbiology, Department of Experimental Biology, Faculty of Science, Masaryk University, Brno, Czechia
| | - David Novák
- Department of Biochemistry, Faculty of Science, Masaryk University, Brno, Czechia
| | - Jan Lochman
- Department of Biochemistry, Faculty of Science, Masaryk University, Brno, Czechia
| | - Roman Zavada
- Innovation Unit, NAFTA a.s., Bratislava, Slovakia
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Wang J, Wang C, Hu M, Bian L, Qu L, Sun H, Wu X, Ren G. Bacterial co-occurrence patterns are more complex but less stable than archaea in enhanced oil recovery applied oil reservoirs. Process Biochem 2023. [DOI: 10.1016/j.procbio.2023.04.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 04/08/2023]
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3
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Sharma N, Lavania M, Koul V, Prasad D, Koduru N, Pandey A, Raj R, Kumar MS, Lal B. Nutrient optimization for indigenous microbial consortia of a Bhagyam oil field: MEOR studies. Front Microbiol 2023; 14:1026720. [PMID: 37007479 PMCID: PMC10060980 DOI: 10.3389/fmicb.2023.1026720] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Accepted: 02/17/2023] [Indexed: 03/18/2023] Open
Abstract
The microbial enhanced oil recovery (MEOR) method is an eco-friendly and economical alternative technology. The technology involves a variety of uncertainties, and its success depends on controlling microbial growth and metabolism. This study is one of a kind that showed successful tertiary recovery of crude oil through indigenous microbial consortia. In this study, a medium was optimized to allow ideal microbial growth under reservoir conditions through RSM. Once the nutrient recipe was optimized, the microbial metabolites were estimated through gas chromatography. The maximum amount of methane gas (0.468 mM) was produced in the TERIW174 sample. The sequencing data set showed the presence of Methanothermobacter sp. and Petrotoga sp. In addition, these established consortia were analyzed for their toxicity, and they appeared to be safe for the environment. Furthermore, a core flood study showed efficient recovery that was ~25 and 34% in TERIW70 and TERIW174 samples, respectively. Thus, both the isolated consortia appeared to be suitable for the field trials.
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Affiliation(s)
- Neha Sharma
- Microbial Biotechnology, Environmental and Industrial Biotechnology Division, The Energy and Resources Institute (TERI), New Delhi, India
| | - Meeta Lavania
- Microbial Biotechnology, Environmental and Industrial Biotechnology Division, The Energy and Resources Institute (TERI), New Delhi, India
- *Correspondence: Meeta Lavania
| | - Vatsala Koul
- Microbial Biotechnology, Environmental and Industrial Biotechnology Division, The Energy and Resources Institute (TERI), New Delhi, India
| | - Dhruva Prasad
- Cairn Oil and Gas, Vedanta Limited, ASF Center, Gurugram, India
| | - Nitish Koduru
- Cairn Oil and Gas, Vedanta Limited, ASF Center, Gurugram, India
| | - Amitabh Pandey
- Cairn Oil and Gas, Vedanta Limited, ASF Center, Gurugram, India
| | - Rahul Raj
- Cairn Oil and Gas, Vedanta Limited, ASF Center, Gurugram, India
| | - M. Suresh Kumar
- Cairn Oil and Gas, Vedanta Limited, ASF Center, Gurugram, India
| | - Banwari Lal
- Microbial Biotechnology, Environmental and Industrial Biotechnology Division, The Energy and Resources Institute (TERI), New Delhi, India
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Zhou L, Wu J, Ji JH, Gao J, Liu YF, Wang B, Yang SZ, Gu JD, Mu BZ. Characteristics of microbiota, core sulfate-reducing taxa and corrosion rates in production water from five petroleum reservoirs in China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 858:159861. [PMID: 36397603 DOI: 10.1016/j.scitotenv.2022.159861] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 10/27/2022] [Accepted: 10/27/2022] [Indexed: 06/16/2023]
Abstract
Microbial diversity and activities in petroleum reservoir systems can be altered by water-flooding operation, but the current understanding of the mechanism for such changes in microbial composition characteristics and community is inadequate. In this study, microbial communities especially functional groups in production water from five petroleum reservoirs in China were investigated by chemical and molecular biological analyses. The dominant and core phyla in the five oil reservoirs were Proteobacteria, Deferribacterota, Firmicutes, Desulfobacterota, Euryarchaeota and Thermoplasmatota. At the genus level, the dominant taxa in each petroleum reservoir were different, and not all of the dominant genera were the core members across the five oil reservoirs. The microbiologically influenced corrosion (MIC) were investigated for the functional groups in each production water. The corrosion rates in production water were higher than controls with a positive correlation to the abundances of sulfate-reducing prokaryotes (SRP). The SRP diversity based on the aprA and dsrA gene analysis showed that obvious differences were evident between onshore (JS, SL, DQ and XJ) and offshore (BS) oilfields. The core SRP taxa in onshore oilfields were Desulfomicrobium and Desulfovibrio, also with Desulfotomaculum in medium/low-temperature oil reservoirs (DQ and XJ), but in high-temperature petroleum reservoirs (JS, BS and SL), Archaeoglobus, Thermodesulfobacterium and Thermodesulfovibrio were the core groups. Statistical analysis indicated that temperature, electron acceptors and donors showed significant influence on the SRP community. This research reveals the characteristics of microbial and functional community as well as their interaction mechanism on corrosion in petroleum reservoir environments, and will improve industrial bio-control and management of MIC in oilfields.
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Affiliation(s)
- Lei Zhou
- State Key Laboratory of Bioreactor Engineering and School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China; Engineering Research Center of Microbial Enhanced Oil Recovery, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China
| | - Jun Wu
- State Key Laboratory of Bioreactor Engineering and School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China
| | - Jia-Heng Ji
- State Key Laboratory of Bioreactor Engineering and School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China
| | - Jie Gao
- State Key Laboratory of Bioreactor Engineering and School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China
| | - Yi-Fan Liu
- State Key Laboratory of Bioreactor Engineering and School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China; Engineering Research Center of Microbial Enhanced Oil Recovery, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China
| | - Biao Wang
- State Key Laboratory of Bioreactor Engineering and School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China; Research Institute of Petroleum Engineering, Jiangsu Oilfield, Sinopec, Yangzhou 225009, PR China
| | - Shi-Zhong Yang
- State Key Laboratory of Bioreactor Engineering and School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China; Engineering Research Center of Microbial Enhanced Oil Recovery, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China
| | - Ji-Dong Gu
- Environmental Science and Engineering Group, Guangdong Technion-Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong 515063, PR China; Guangdong Provincial Key Laboratory of Materials and Technologies for Energy Conversion, Guangdong Technion-Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong 515063, PR China
| | - Bo-Zhong Mu
- State Key Laboratory of Bioreactor Engineering and School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China; Engineering Research Center of Microbial Enhanced Oil Recovery, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, PR China.
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Dutra J, Gomes R, Yupanqui García GJ, Romero-Cale DX, Santos Cardoso M, Waldow V, Groposo C, Akamine RN, Sousa M, Figueiredo H, Azevedo V, Góes-Neto A. Corrosion-influencing microorganisms in petroliferous regions on a global scale: systematic review, analysis, and scientific synthesis of 16S amplicon metagenomic studies. PeerJ 2023; 11:e14642. [PMID: 36655046 PMCID: PMC9841911 DOI: 10.7717/peerj.14642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Accepted: 12/05/2022] [Indexed: 01/15/2023] Open
Abstract
The objective of the current systematic review was to evaluate the taxonomic composition and relative abundance of bacteria and archaea associated with the microbiologically influenced corrosion (MIC), and the prediction of their metabolic functions in different sample types from oil production and transport structures worldwide. To accomplish this goal, a total of 552 published studies on the diversity of microbial communities using 16S amplicon metagenomics in oil and gas industry facilities indexed in Scopus, Web of Science, PubMed and OnePetro databases were analyzed on 10th May 2021. The selection of articles was performed following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. Only studies that performed amplicon metagenomics to obtain the microbial composition of samples from oil fields were included. Studies that evaluated oil refineries, carried out amplicon metagenomics directly from cultures, and those that used DGGE analysis were removed. Data were thoroughly investigated using multivariate statistics by ordination analysis, bivariate statistics by correlation, and microorganisms' shareability and uniqueness analysis. Additionally, the full deposited databases of 16S rDNA sequences were obtained to perform functional prediction. A total of 69 eligible articles was included for data analysis. The results showed that the sulfidogenic, methanogenic, acid-producing, and nitrate-reducing functional groups were the most expressive, all of which can be directly involved in MIC processes. There were significant positive correlations between microorganisms in the injection water (IW), produced water (PW), and solid deposits (SD) samples, and negative correlations in the PW and SD samples. Only the PW and SD samples displayed genera common to all petroliferous regions, Desulfotomaculum and Thermovirga (PW), and Marinobacter (SD). There was an inferred high microbial activity in the oil fields, with the highest abundances of (i) cofactor, (ii) carrier, and (iii) vitamin biosynthesis, associated with survival metabolism. Additionally, there was the presence of secondary metabolic pathways and defense mechanisms in extreme conditions. Competitive or inhibitory relationships and metabolic patterns were influenced by the physicochemical characteristics of the environments (mainly sulfate concentration) and by human interference (application of biocides and nutrients). Our worldwide baseline study of microbial communities associated with environments of the oil and gas industry will greatly facilitate the establishment of standardized approaches to control MIC.
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Affiliation(s)
- Joyce Dutra
- Graduate Program in Microbiology, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - Rosimeire Gomes
- Graduate Program in Microbiology, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - Glen Jasper Yupanqui García
- Graduate Program in Bioinformatics, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | | | - Mariana Santos Cardoso
- Graduate Program in Bioinformatics, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - Vinicius Waldow
- Petrobras Research and Development Center (CENPES), Petrobras, Rio de Janeiro, Rio de Janeiro, Brazil
| | | | - Rubens N. Akamine
- Petrobras Research and Development Center (CENPES), Petrobras, Rio de Janeiro, Rio de Janeiro, Brazil
| | - Maira Sousa
- Petrobras Research and Development Center (CENPES), Petrobras, Rio de Janeiro, Rio de Janeiro, Brazil
| | - Henrique Figueiredo
- Veterinary School, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - Vasco Azevedo
- Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - Aristóteles Góes-Neto
- Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
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Gao P, Li Y, Tian H, Li G, Zhao F, Xia W, Pan X, Gu JD, Le J, Jia C, Ma T. Bacterial and Archaeal Community Distribution in Oilfield Water Re-injection Facilities and the Influences from Microorganisms in Injected Water. MICROBIAL ECOLOGY 2022; 84:1011-1028. [PMID: 34845558 DOI: 10.1007/s00248-021-01933-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 11/15/2021] [Indexed: 06/13/2023]
Abstract
Water flooding is widely employed for oil production worldwide. However, there has never been a systematic investigation of the microbial communities occurring in oilfield water re-injection facilities. Here, we investigated the distribution of bacterial and archaeal communities in water re-injection facilities of an oilfield, and illustrated the combined influences of environmental variation and the microorganisms in injected water on the microbial communities. Bacterial communities from the surface injection facilities were dominated by aerobic or facultative anaerobic Betaproteobacteria, Alphaproteobacteria, and Flavobacteria, whereas Clostridia, Deltaproteobacteria, Anaerolineae, and Synergistia predominated in downhole of the injection wells, and Gammaproteobacteria, Betaproteobacteria, and Epsilonproteobacteria predominated in the production wells. Methanosaeta, Methanobacterium, and Methanolinea were dominant archaea in the injection facilities, while Methanosaeta, Methanomethylovorans, and Methanoculleus predominated in the production wells. This study also demonstrated that the microorganisms in injected water could be easily transferred from injection station to wellheads and downhole of injection wells, and environmental variation and diffusion-limited microbial transfer resulted from formation filtration were the main factors determining microbial community assembly in oil-bearing strata. The results provide novel information on the bacterial and archaeal communities and the underlying mechanisms occurring in oilfield water re-injection facilities, and benefit the development of effective microbiologically enhanced oil recovery and microbiologically prevented reservoir souring programs.
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Affiliation(s)
- Peike Gao
- College of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China.
| | - Yu Li
- College of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China
| | - Huimei Tian
- College of Forestry, Shandong Agricultural University, Tai'an, 271018, Shandong, China
| | - Guoqiang Li
- College of Life Sciences, Nankai University, Tianjin, 300071, China
| | - Feng Zhao
- College of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China
| | - Wenjie Xia
- College of Life Sciences, Nankai University, Tianjin, 300071, China
| | - Xunli Pan
- College of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China
| | - Ji-Dong Gu
- Environmental Engineering, Guangdong Technion - Israel Institute of Technology, Shantou, 515063, Guangdong, China
| | - Jianjun Le
- Daqing Oilfield Company Ltd Exploration and Development Research Institute, Daqing, 163000, Heilongjiang, China
| | - Chuanxing Jia
- College of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China
| | - Ting Ma
- College of Life Sciences, Nankai University, Tianjin, 300071, China.
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Yun Y, Gui Z, Su T, Tian X, Wang S, Chen Y, Su Z, Fan H, Xie J, Li G, Xia W, Ma T. Deep mining decreases the microbial taxonomic and functional diversity of subsurface oil reservoirs. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 821:153564. [PMID: 35101516 DOI: 10.1016/j.scitotenv.2022.153564] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2021] [Revised: 01/25/2022] [Accepted: 01/26/2022] [Indexed: 06/14/2023]
Abstract
Microbes in subsurface oil reservoirs play important roles in elemental cycles and biogeochemical processes. However, the community assembly pattern of indigenous microbiome and their succession under long-term human activity remain poorly understood. Here we studied the microbial community assembly in underground sandstone cores from 190 to 2050 m in northeast China and their response to long-term oil recovery (10-50 years). Indigenous microbiome in subsurface petroleum reservoirs were dominated by Gammaproteobacteria, Firmicutes, Alphaproteobacteria, Bacteroidetes, and Actinobacteria, which exhibited a higher contribution of homogenizing dispersal assembly and different taxonomy distinct ecological modules when compared with perturbed samples. Specifically, the long-term oil recovery reduced the bacterial taxonomic- and functional-diversity, and increased the community co-occurrence associations in subsurface oil reservoirs. Moreover, distinguished from the perturbed samples, both variation partition analysis and structural equation model revealed that the contents of quartz, NO3- and Cl- significantly structured the α- and β-diversity in indigenous subsurface bacterial communities. These findings first provide the holistic picture of microbiome in the deep oil reservoirs, which demonstrate the significant impact of human activity on microbiome in deep continental subsurface.
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Affiliation(s)
- Yuan Yun
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China
| | - Ziyu Gui
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China
| | - Tianqi Su
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China
| | - Xuefeng Tian
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China
| | - Shaojing Wang
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China
| | - Yu Chen
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China
| | - Zhaoying Su
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China
| | - Huiqiang Fan
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China
| | - Jinxia Xie
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China
| | - Guoqiang Li
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China
| | - Wenjie Xia
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China
| | - Ting Ma
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China.
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Tiburcio SRG, Macrae A, Peixoto RS, da Costa Rachid CTC, Mansoldo FRP, Alviano DS, Alviano CS, Ferreira DF, de Queiroz Venâncio F, Ferreira DF, Vermelho AB. Sulphate-reducing bacterial community structure from produced water of the Periquito and Galo de Campina onshore oilfields in Brazil. Sci Rep 2021; 11:20311. [PMID: 34645885 PMCID: PMC8514479 DOI: 10.1038/s41598-021-99196-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2020] [Accepted: 09/09/2021] [Indexed: 12/28/2022] Open
Abstract
Sulphate-reducing bacteria (SRB) cause fouling, souring, corrosion and produce H2S during oil and gas production. Produced water obtained from Periquito (PQO) and Galo de Campina (GC) onshore oilfields in Brazil was investigated for SRB. Produced water with Postgate B, Postgate C and Baars media was incubated anaerobically for 20 days. DNA was extracted, 16S rDNA PCR amplified and fragments were sequenced using Illumina TruSeq. 4.2 million sequence reads were analysed and deposited at NCBI SAR accession number SRP149784. No significant differences in microbial community composition could be attributed to the different media but significant differences in the SRB were observed between the two oil fields. The dominant bacterial orders detected from both oilfields were Desulfovibrionales, Pseudomonadales and Enterobacteriales. The genus Pseudomonas was found predominantly in the GC oilfield and Pleomorphominas and Shewanella were features of the PQO oilfield. 11% and 7.6% of the sequences at GC and PQO were not classified at the genus level but could be partially identified at the order level. Relative abundances changed for Desulfovibrio from 29.8% at PQO to 16.1% at GC. Clostridium varied from 2.8% at PQO and 2.4% at GC. These data provide the first description of SRB from onshore produced water in Brazil and reinforce the importance of Desulfovibrionales, Pseudomonadales, and Enterobacteriales in produced water globally. Identifying potentially harmful microbes is an important first step in developing microbial solutions that prevent their proliferation.
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Affiliation(s)
- Samyra Raquel Gonçalves Tiburcio
- Post Graduate Program in Plant Biotechnology and Bioprocesses, Decania, Center for Health Sciences, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
| | - Andrew Macrae
- Post Graduate Program in Plant Biotechnology and Bioprocesses, Decania, Center for Health Sciences, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil.
- Institute of Microbiology Paulo de Góes, Brasil, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil.
| | - Raquel Silva Peixoto
- Post Graduate Program in Plant Biotechnology and Bioprocesses, Decania, Center for Health Sciences, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
- Institute of Microbiology Paulo de Góes, Brasil, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
- Red Sea Research Center (RSRC), Division of Biological and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | | | - Felipe Raposo Passos Mansoldo
- Institute of Microbiology Paulo de Góes, Brasil, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
- BIOINOVAR - Biocatalysis, Bioproducts and Bioenergy Lab, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
| | - Daniela Sales Alviano
- Post Graduate Program in Plant Biotechnology and Bioprocesses, Decania, Center for Health Sciences, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
- Institute of Microbiology Paulo de Góes, Brasil, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
| | - Celuta Sales Alviano
- Post Graduate Program in Plant Biotechnology and Bioprocesses, Decania, Center for Health Sciences, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
- Institute of Microbiology Paulo de Góes, Brasil, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
| | - Davis Fernandes Ferreira
- Post Graduate Program in Plant Biotechnology and Bioprocesses, Decania, Center for Health Sciences, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
- Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC, USA
| | | | | | - Alane Beatriz Vermelho
- Post Graduate Program in Plant Biotechnology and Bioprocesses, Decania, Center for Health Sciences, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
- Institute of Microbiology Paulo de Góes, Brasil, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
- BIOINOVAR - Biocatalysis, Bioproducts and Bioenergy Lab, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
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Nitrogen has a greater influence than phosphorus on the diazotrophic community in two successive crop seasons in Northeast China. Sci Rep 2021; 11:6303. [PMID: 33737649 PMCID: PMC7973567 DOI: 10.1038/s41598-021-85829-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2020] [Accepted: 03/08/2021] [Indexed: 12/01/2022] Open
Abstract
Fertilizer-induced changes in soil nutrients regulate nitrogen (N) fixation in the terrestrial biosphere, but the influences of N and phosphorus (P) fertilization on the diazotroph communities in successive crop seasons were unclear. In this study, we assessed the effects of N and P (high vs. low doses) on the abundance and structure of N2-fixation communities after wheat and soybean harvest in a long-term (34 and 35 years) fertilization experiment. In both seasons, long-term N addition significantly decreased the abundance of nifH genes and 16S rDNA; in addition, high doses of N and P fertilizer decreased the richness of diazotrophs, whereas low doses did not. The proportion of the dominant genus, Bradyrhizobium, in the soybean season (86.0%) was higher than that in the wheat season (47.9%). Fertilization decreased diazotroph diversity and the relative abundance of Bradyrhizobium in the wheat season, but had insignificant effects in the soybean season. The addition of N, but not P, significantly changed the communities of both diazotrophs (at the genus level) and rhizobia (at the species level) in the two seasons. Soil pH was positively associated with nifH abundance and diazotrophic richness; soil NO3− content was negatively correlated with diazotrophic richness and positively correlated with diversity. Soil pH and NO3− content were the two main drivers shaping the soil diazotrophic community. Overall, long-term inorganic N had a greater influence than P on both diazotrophic abundance and community composition, and diazotrophic diversity was more clearly affected by fertilization in the wheat season than in the soybean season.
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Ren G, Wang J, Qu L, Li W, Hu M, Bian L, Zhang Y, Le J, Dou X, Chen X, Bai L, Li Y. Compositions and Co-occurrence Patterns of Bacterial Communities Associated With Polymer- and ASP-Flooded Petroleum Reservoir Blocks. Front Microbiol 2020; 11:580363. [PMID: 33335516 PMCID: PMC7736161 DOI: 10.3389/fmicb.2020.580363] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2020] [Accepted: 11/05/2020] [Indexed: 11/19/2022] Open
Abstract
Polymer flooding technology and alkaline-surfactant-polymer (ASP) flooding technology have been widely used in some oil reservoirs. About 50% of remaining oil is trapped, however, in polymer-flooded and ASP-flooded reservoirs. How to further improve oil recovery of these reservoirs after chemical flooding is technically challenging. Microbial enhanced oil recovery (MEOR) technology is a promising alternative technology. However, the bacterial communities in the polymer-flooded and ASP-flooded reservoirs have rarely been investigated. We investigated the distribution and co-occurrence patterns of bacterial communities in ASP-flooded and polymer-flooded oil production wells. We found that Arcobacter and Pseudomonas were dominant both in the polymer-flooded and ASP-flooded production wells. Halomonas accounted for a large amount of the bacterial communities inhabiting in the ASP-flooded blocks, whereas they were hardly detected in the polymer-flooded blocks, and the trends for Acetomicrobium were the opposite. RDA analysis indicated that bacterial communities in ASP-flooded and polymer-flooded oil production wells are closely related to the physical and chemical properties, such as high salinity and strong alkaline, which together accounted for 56.91% of total variance. Co-occurrence network analysis revealed non-random combination patterns of bacterial composition from production wells of ASP-flooded and polymer-flooded blocks, and the ASP-flooded treatment decreased bacterial network complexity, suggesting that the application of ASP flooding technology reduced the tightness of bacterial interactions.
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Affiliation(s)
- Guoling Ren
- Heilongjiang Provincial Key Laboratory of Oilfield Applied Chemistry and Technology, Daqing, China.,College of Bioengineering, Daqing Normal University, Daqing, China
| | - Jinlong Wang
- Heilongjiang Provincial Key Laboratory of Oilfield Applied Chemistry and Technology, Daqing, China.,College of Bioengineering, Daqing Normal University, Daqing, China
| | - Lina Qu
- Heilongjiang Provincial Key Laboratory of Oilfield Applied Chemistry and Technology, Daqing, China.,College of Bioengineering, Daqing Normal University, Daqing, China
| | - Wei Li
- Exploration and Development Research Institute, Daqing Oil Field Company, Ltd., Daqing, China
| | - Min Hu
- Heilongjiang Provincial Key Laboratory of Oilfield Applied Chemistry and Technology, Daqing, China.,College of Bioengineering, Daqing Normal University, Daqing, China
| | - Lihong Bian
- Heilongjiang Provincial Key Laboratory of Oilfield Applied Chemistry and Technology, Daqing, China.,College of Bioengineering, Daqing Normal University, Daqing, China
| | - Yiting Zhang
- Heilongjiang Provincial Key Laboratory of Oilfield Applied Chemistry and Technology, Daqing, China.,College of Bioengineering, Daqing Normal University, Daqing, China
| | - Jianjun Le
- Exploration and Development Research Institute, Daqing Oil Field Company, Ltd., Daqing, China
| | - Xumou Dou
- Exploration and Development Research Institute, Daqing Oil Field Company, Ltd., Daqing, China
| | - Xinhong Chen
- Exploration and Development Research Institute, Daqing Oil Field Company, Ltd., Daqing, China
| | - Lulu Bai
- Exploration and Development Research Institute, Daqing Oil Field Company, Ltd., Daqing, China
| | - Yue Li
- College of Bioengineering, Daqing Normal University, Daqing, China
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Chen Y, Pan J, Yun Y, Zhi B, Li G, Li M, Ma T. Halomonas plays a central role in the syntrophic community of an alkaline oil reservoir with alkali-surfactant-polymer (ASP) flooding. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 747:141333. [PMID: 32795799 DOI: 10.1016/j.scitotenv.2020.141333] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2020] [Revised: 07/21/2020] [Accepted: 07/27/2020] [Indexed: 06/11/2023]
Abstract
Little is known about the microbial characteristics in oil reservoirs under alkali-surfactant-polymer (ASP)-flooding. In the present study, we collected two ASP-flooding samples and two nearby water-flooding samples from the Daqing oil field and performed 16S rRNA gene sequencing and metagenomic sequencing to fill this knowledge gap. The results indicated that the highly elevated pH resulted in a simple Euryarchaeotal community and a Halomonas &Nitrincola-dominated bacterial community in the production water of the alkaline oil reservoir. In addition, we hypothesized that multiple copies of genes encoding monovalent cation/proton antiporters in Halomonas and Nitrincola, and their facultative anaerobic and movable traits, were the adaptive mechanisms responsible for their competitive growth in the alkaline oil reservoir. We also revealed a unique syntrophic community in the alkaline oil reservoir and identified the central role of Halomonas within it. The present study revealed the microbial characteristics in an alkaline oil reservoir environment formed by ASP-flooding and indicated the application potential of Halomonas in AMP-flooding and microbial enhanced oil recovery (MEOR) technology to elevate the oil recovery rate from ASP-flooded oil reservoirs.
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Affiliation(s)
- Yu Chen
- College of Life Sciences, Nankai University, Tianjin, China
| | - Jie Pan
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen, China
| | - Yuan Yun
- College of Life Sciences, Nankai University, Tianjin, China
| | - Bo Zhi
- College of Life Sciences, Nankai University, Tianjin, China
| | - Guoqiang Li
- College of Life Sciences, Nankai University, Tianjin, China
| | - Meng Li
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen, China.
| | - Ting Ma
- College of Life Sciences, Nankai University, Tianjin, China.
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Effects of early protein restriction on the growth performance and gut development of pigs fed diets with or without antibiotic. Animal 2019; 14:1392-1401. [PMID: 31870464 DOI: 10.1017/s1751731119002921] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
In the livestock husbandry compensatory growth may be explored as a means to improve nutrient utilization, to reduce gut health problems due to excess protein intake, to simplify feeding strategies and thus to improve production efficiencies. This study investigated the effects of early protein restriction (EPR) and early antibiotic intervention (EAI) on growth performance, intestinal morphology, colonic bacteria, metabolites and mucosal gene expressions during the restriction phase and re-alimentation phase. A total of 64 piglets (10.04 ± 0.73 kg) were randomly divided into four treatment groups according to a 2 × 2 factorial arrangement with two levels of proteins (14% v. 20%) and two levels of antibiotics (0 v. 50 mg/kg kitasamycin and 20 mg/kg colistin sulphate). After a 30-day restriction phase with four kinds of diets, all groups were fed the same diets for another 74 days. The results showed that EPR decreased BW, average daily gain (ADG), average daily feed intake in the restriction phase (P < 0.01) and increased ADG on days 66 to 104 of the late re-alimentation phase. Early protein restriction could decrease the villus height in the jejunum (P < 0.05), while shifting to the same diets restored the villus height. Meanwhile, during the re-alimentation phase, pigs in the protein restriction groups had increased concentrations of total short chain fatty acids (P < 0.05), and modified the abundances of Firmicutes and Bacteroidetes in the colon. Furthermore, the lower microbial diversity caused by EPR was improved, and gene expression analysis indicated a better barrier function in the colon. During the whole trial, EAI had no interaction with EPR and played a dispensable role in compensatory growth. Collectively, the retardation of growth caused by EPR can be compensated for in the later stages of pig raising, and accompanied by altered intestinal morphology, microbial composition.
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