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Khan MTA, Al-Battashi H, Al-Hinai M, Almdawi M, Pracejus B, Elshafey ESI, Abed RMM. Isolation of Aerobic Heterotrophic Bacteria from a Microbial Mat with the Ability to Grow on and Remove Hexavalent Chromium through Biosorption and Bioreduction. Appl Biochem Biotechnol 2024:10.1007/s12010-024-05023-0. [PMID: 39102082 DOI: 10.1007/s12010-024-05023-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/23/2024] [Indexed: 08/06/2024]
Abstract
Water pollution with toxic hexavalent chromium, Cr(VI), is an environmental threat that has a direct impact on living organisms. The use of microorganisms from microbial mats to remove Cr(VI) has scarcely been investigated. Here, we isolated aerobic heterotrophic bacteria from a Cr-polluted microbial mat found in a mining site in Oman, and investigated their ability to remove Cr(VI), and the underlying mechanism(s) of removal. All isolates fell phylogenetically into the genera Enterobacter, Bacillus, and Cupriavidus, and could completely remove 1 mg L-1 Cr(VI) in 6 days. The strains could tolerate up to 2000 mg L-1 Cr(VI), and exhibited the highest Cr(VI) removal rate at 100 ± 9 mg L-1 d-1. Using scanning electron microscopy (SEM) coupled with elemental analysis, the strains were shown to adsorb Cr(VI) at their cell surfaces. The functional groups OH, NH2, Alkyl, Metal-O, and Cr(VI)-O were involved in the biosorption process. In addition, the strains were shown to reduce Cr(VI) to Cr(III) with the involvement of chromate reductase enzyme. We conclude that the aerobic heterotrophic bacteria isolated from Cr-polluted microbial mats use biosorption and bioreduction processes to remove Cr(VI) from wastewater.
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Affiliation(s)
- Mohammad Tariq Ali Khan
- Biology Department, College of Science, Sultan Qaboos University, P. O. Box: 36, PC 123, Al Khoud, Sultanate of Oman
| | - Huda Al-Battashi
- Biology Department, College of Science, Sultan Qaboos University, P. O. Box: 36, PC 123, Al Khoud, Sultanate of Oman
| | - Mahmood Al-Hinai
- Biology Department, College of Science, Sultan Qaboos University, P. O. Box: 36, PC 123, Al Khoud, Sultanate of Oman
| | - Malak Almdawi
- Biology Department, College of Science, Sultan Qaboos University, P. O. Box: 36, PC 123, Al Khoud, Sultanate of Oman
| | - Bernhard Pracejus
- Department of Earth Sciences, College of Science, Sultan Qaboos University, P. O. Box: 36, PC 123, Al Khoud, Sultanate of Oman
| | - El-Said I Elshafey
- Chemistry Department, College of Science, Sultan Qaboos University, P. O. Box: 36, PC 123, Al Khoud, Sultanate of Oman
| | - Raeid M M Abed
- Biology Department, College of Science, Sultan Qaboos University, P. O. Box: 36, PC 123, Al Khoud, Sultanate of Oman.
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Géron A, Werner J, Wattiez R, Matallana-Surget S. Towards the discovery of novel molecular clocks in Prokaryotes. Crit Rev Microbiol 2024; 50:491-503. [PMID: 37330701 DOI: 10.1080/1040841x.2023.2220789] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Revised: 01/17/2023] [Accepted: 02/15/2023] [Indexed: 06/19/2023]
Abstract
Diel cycle is of enormous biological importance as it imposes daily oscillation in environmental conditions, which temporally structures most ecosystems. Organisms developed biological time-keeping mechanisms - circadian clocks - that provide a significant fitness advantage over competitors by optimising the synchronisation of their biological activities. While circadian clocks are ubiquitous in Eukaryotes, they are so far only characterised in Cyanobacteria within Prokaryotes. However, growing evidence suggests that circadian clocks are widespread in the bacterial and archaeal domains. As Prokaryotes are at the heart of crucial environmental processes and are essential to human health, unravelling their time-keeping systems provides numerous applications in medical research, environmental sciences, and biotechnology. In this review, we elaborate on how novel circadian clocks in Prokaryotes offer research and development perspectives. We compare and contrast the different circadian systems in Cyanobacteria and discuss about their evolution and taxonomic distribution. We necessarily provide an updated phylogenetic analysis of bacterial and archaeal species that harbour homologs of the main cyanobacterial clock components. Finally, we elaborate on new potential clock-controlled microorganisms that represent opportunities of ecological and industrial relevance in prokaryotic groups such as anoxygenic photosynthetic bacteria, methanogenic archaea, methanotrophs or sulphate-reducing bacteria.
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Affiliation(s)
- Augustin Géron
- Division of Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, UK
- Proteomic and Microbiology Department, University of Mons, Mons, Belgium
| | - Johannes Werner
- High Performance and Cloud Computing Group, Zentrum für Datenverarbeitung (ZDV), University of Tübingen, Tübingen, Germany
| | - Ruddy Wattiez
- Proteomic and Microbiology Department, University of Mons, Mons, Belgium
| | - Sabine Matallana-Surget
- Division of Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, UK
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Pontet NGM, Fernández C, Botté SE. Novel method of removing metals from estuarine water using whole microbial mats. Biometals 2024; 37:877-894. [PMID: 38270738 DOI: 10.1007/s10534-023-00578-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 12/22/2023] [Indexed: 01/26/2024]
Abstract
This study addresses the limited understanding of chromium-microbial mat interactions in estuarine tidal flats. The aims were to evaluate (1) the efficiency of the microbial consortium in Cr(III) removal from seawater; (2) the elemental and mineralogical composition of the microbial mat as a natural system in the Cr removal, (3) the effects of metal on microphytobenthos, and (4) possible interactions of Cr with other metals present in the consortium. Microbial mats were exposed to Cr(III) solutions at different concentrations (2-30 mg Cr/L). Analysis such as metal concentration, organic matter content, chlorophyll a and phaeopigment concentrations, abundance of diatoms and cyanobacteria, SEM-EDS, and XRD were performed. Most of the Cr(III) was deposited, as chromium oxide/hydroxide, on the surface of all microbial mat components. The complete microbial mat, comprising sediments, detritus, EPS, and diverse microorganism communities, exhibited a remarkable capacity to accumulate Cr(III), retaining over 87% in the solution.
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Affiliation(s)
- Natalia Gabriela Morales Pontet
- Argentine Institute of Oceanography, CONICET - National University of the South (UNS), Carrindanga 7.5 km Road, B8000FWB , Bahía Blanca, Argentina.
- Department of Biology, Biochemistry, and Pharmacy, National University of the South (UNS), San Juan 670, B8000ICN, Bahía Blanca, Argentina.
| | - Carolina Fernández
- Institute of Biochemical Research of Bahía Blanca, CONICET - National University of the South (UNS), Carrindanga 7.5 km Road, B8000FWB, Bahía Blanca, Argentina
- Center for Entrepreneurship and Sustainable Territorial Development (CEDETS), Provincial University of the Southwest (UPSO) - Commission of Scientific Research of the Province of Buenos Aires (CIC), Cali 320 city, B8003FTH, Bahía Blanca, Argentina
| | - Sandra Elizabeth Botté
- Argentine Institute of Oceanography, CONICET - National University of the South (UNS), Carrindanga 7.5 km Road, B8000FWB , Bahía Blanca, Argentina
- Department of Biology, Biochemistry, and Pharmacy, National University of the South (UNS), San Juan 670, B8000ICN, Bahía Blanca, Argentina
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4
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Morales-Pontet NG, Fernández C, Botté SE. Chromium removal by microbial mats: understanding the effect of salinity and pH. ENVIRONMENTAL MONITORING AND ASSESSMENT 2024; 196:686. [PMID: 38958830 DOI: 10.1007/s10661-024-12847-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Accepted: 06/22/2024] [Indexed: 07/04/2024]
Abstract
Environmental contamination by chromium represents a serious public health problem. Therefore, it is crucial to develop and optimize remediation technologies to reduce its concentration in the environment. The aims of this study were to evaluate the uptake of chromium by live and complete microbial mats in experimental mesocosms under different pH and salinity conditions to understand how these factors affect the microphytobenthic community and, consequently, how chromium removal process is influenced. Microbial mats from the estuarine environment were exposed to 15 mg Cr/L under different pH (2, 4, and 8) and salinity (2, 15, and 33) conditions. Salinity, redox potential, and pH were measured throughout the trial in solutions and in microbial mats, while total Cr determinations were performed at the end of the assay. The results demonstrated that the removal efficiency of Cr by microbial mats was significantly improved in solutions at pH 2, remaining unaffected by variations in salinity. Notably, both cyanobacteria and diatoms showed remarkable resistance to Cr exposure under all conditions tested, highlighting their exceptional adaptability. Microbial mats have proved to be effective filters for reducing the concentration of chromium in aqueous solutions with varying pH and salinity levels.
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Affiliation(s)
- Natalia Gabriela Morales-Pontet
- Instituto Argentino de Oceanografía, CONICET - Universidad Nacional del Sur (UNS), Camino Carrindanga 7.5 Km, B8000FWB, Bahía Blanca, Argentina.
- Departamento de Biología, Bioquímica y Farmacia, Universidad Nacional del Sur (UNS), San Juan 670, B8000ICN, Bahía Blanca, Argentina.
| | - Carolina Fernández
- Instituto de Investigaciones Bioquímicas de Bahía Blanca, CONICET - Universidad Nacional del Sur (UNS), Camino Carrindanga 7.5 Km, B8000FWB, Bahía Blanca, Argentina
- Centro de Emprendedorismo y Desarrollo Territorial Sostenible (CEDETS), Universidad Provincial del Sudoeste (UPSO) - Comisión de Investigaciones Científicas de La Provincia de Buenos Aires (CIC), Ciudad de Cali 320, B8003FTH, Bahía Blanca, Argentina
| | - Sandra Elizabeth Botté
- Instituto Argentino de Oceanografía, CONICET - Universidad Nacional del Sur (UNS), Camino Carrindanga 7.5 Km, B8000FWB, Bahía Blanca, Argentina
- Departamento de Biología, Bioquímica y Farmacia, Universidad Nacional del Sur (UNS), San Juan 670, B8000ICN, Bahía Blanca, Argentina
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5
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Tumolo M, De Paola D, Uricchio VF, Ancona V. Biostimulation effect of different amendments on Cr(VI) recovering microbial community. N Biotechnol 2023; 78:29-41. [PMID: 37793602 DOI: 10.1016/j.nbt.2023.09.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 09/15/2023] [Accepted: 09/30/2023] [Indexed: 10/06/2023]
Abstract
The present study used Cr(VI)-polluted microcosms amended with lactate or yeast extract, and nonamended microcosms as control, to investigate how a native bacterial community varied in response to the treatment and during the pollutant removal. Results suggested that providing electron donors resulted in a proliferation of a few bacterial species, with the consequent decrease in observed species richness and evenness, and was a driving force for the bacterial compositional shift. Lactate promoted, in the first instance, the enrichment of fermentative bacteria belonging to Chromobacteriaceae, including Paludibacterium, and Micrococcaceae as observed after 4 days. When the rate of Cr(VI) removal was maximum in microcosms amended with lactate, the most represented taxa were Pseudarcicella and Azospirillum. Using yeast extract as a carbon source and electron donor led instead to the significant enrichment of Shewanella, followed by Vogesella and Acinetobacter on the 4th day, corresponding to 90% of Cr(VI) removed from the system. After the complete Cr(VI) removal, achieved in 7 days in the presence of yeast extract, α-diversity was notably increased. The amendment-specific turnover of the enriched bacterial taxa resulted in a different kinetic of pollutant removal. In particular, yeast extract promoted the quickest Cr(VI) reduction, while lactate supported a slower, but also considerable, pollutant removal from water. Since it is reasonable to assume that a macroscopic effect, such as the observed Cr(VI) removal, involved the overrepresented taxa, deepening the knowledge of the native bacterial community and its changes were used to hypothesize the possible microbial pathways involved.
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Affiliation(s)
- Marina Tumolo
- Water Research Institute, Italian National Research Council (IRSA-CNR), 70132 Bari, BA, Italy; Department of Biology, University of Bari, 70126 Bari, BA, Italy
| | - Domenico De Paola
- Institute of Biosciences and Bioresources, Italian National Research Council (IBBR-CNR), 70126 Bari, BA, Italy.
| | - Vito Felice Uricchio
- Water Research Institute, Italian National Research Council (IRSA-CNR), 70132 Bari, BA, Italy
| | - Valeria Ancona
- Water Research Institute, Italian National Research Council (IRSA-CNR), 70132 Bari, BA, Italy.
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6
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Rahman Z, Thomas L, Chetri SPK, Bodhankar S, Kumar V, Naidu R. A comprehensive review on chromium (Cr) contamination and Cr(VI)-resistant extremophiles in diverse extreme environments. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:59163-59193. [PMID: 37046169 DOI: 10.1007/s11356-023-26624-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Accepted: 03/20/2023] [Indexed: 05/10/2023]
Abstract
Chromium (Cr) compounds are usually toxins and exist abundantly in two different forms, Cr(VI) and Cr(III), in nature. Their contamination in any environment is a major problem. Many extreme environments including cold climate, warm climate, acidic environment, basic/alkaline environment, hypersaline environment, radiation, drought, high pressure, and anaerobic conditions have accumulated elevated Cr contamination. These harsh physicochemical conditions associated with Cr(VI) contamination damage biological systems in various ways. However, several unique microorganisms belonging to phylogenetically distant taxa (bacteria, fungi, and microalgae) owing to different and very distinct physiological characteristics can withstand extremities of Cr(VI) in different physicochemical environments. These challenging situations offer great potential and extended proficiencies in extremophiles for environmental and biotechnological applications. On these issues, the present review draws attention to Cr(VI) contamination from diverse extreme environmental regions. The study gives a detailed account on the ecology and biogeography of Cr(VI)-resistant microorganisms in inhospitable environments, and their use for detoxifying Cr(VI) and other applications. The study also focuses on physiological, multi-omics, and genetic engineering approaches of Cr(VI)-resistant extremophiles.
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Affiliation(s)
- Zeeshanur Rahman
- Department of Botany, Zakir Husain Delhi College, University of Delhi, Delhi, India.
| | - Lebin Thomas
- Department of Botany, Hansraj College, University of Delhi, Delhi, India
| | - Siva P K Chetri
- Department of Botany, Dimoria College, Gauhati University, Guwahati, Assam, India
| | - Shrey Bodhankar
- Department of Agriculture Microbiology, School of Agriculture Sciences, Anurag University, Hyderabad, Telangana, India
| | - Vikas Kumar
- Department of Botany, University of Lucknow, Lucknow, Uttar Pradesh, India
| | - Ravi Naidu
- Global Centre for Environmental Remediation, University of Newcastle, Newcastle, Australia
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Morales Pontet NG, Fernández C, Perillo VL, La Colla NS, Serra AV, Botté SE. Preliminary assessment of microbial mats in seawater metal remediation. ENVIRONMENTAL MONITORING AND ASSESSMENT 2023; 195:516. [PMID: 36976402 DOI: 10.1007/s10661-023-11134-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Accepted: 03/12/2023] [Indexed: 06/18/2023]
Abstract
Microbial mats have a special role in the removal of metals in marine environment. This study aimed to experimentally determine the efficiency of Cr removal from seawater by microbial mats. The effect of Cr on the microphytobenthic community and the influence of an aerated condition on the removal of metal and microorganisms were also considered. Hence, microbial mat samples were subdivided in 4 groups: submerged in Cr (chromium 2 mg/L without aeration), Cr + O2 (chromium 2 mg/L with aeration), SW + O2 (filtered seawater with aeration), and a control: SW (filtered seawater with neither chromium nor aeration). Water and microbial mat subsamples were used to determine Cr concentrations, organic matter content, granulometry, physicochemical parameters, chlorophyll a, phaeopigments, and quantitative analysis of the microphytobenthic community. Cr removal efficiency from seawater was 95% for the Cr treatment and 99% for the Cr + O2 treatment. The abundance of cyanobacteria tended to decrease between the initial and final days of the assay, whereas the opposite trend was observed for diatoms. Two aspects are worth noting in the paper: microbial mats efficiently removed Cr from seawater at a concentration of 2 mg Cr/L and the removal of Cr by microbial mats was more efficient with water aeration.
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Affiliation(s)
- Natalia Gabriela Morales Pontet
- Instituto Argentino de Oceanografía, CONICET - Universidad Nacional del Sur (UNS), Camino Carrindanga 7.5 Km, B8000FWB, Bahia Blanca, Argentina.
| | - Carolina Fernández
- Instituto de Investigaciones Bioquímicas de Bahía Blanca, CONICET - Universidad Nacional del Sur (UNS), Camino Carrindanga 7.5 Km, B8000FWB, Bahia Blanca, Argentina
- Centro de Emprendedorismo Y Desarrollo Territorial Sostenible (CEDETS), Universidad Provincial del Sudoeste (UPSO) - Comisión de Investigaciones Científicas de La Provincia de Buenos Aires (CIC), Ciudad de Cali 320, B8003FTH, Bahia Blanca, Argentina
| | - Vanesa Liliana Perillo
- Instituto Argentino de Oceanografía, CONICET - Universidad Nacional del Sur (UNS), Camino Carrindanga 7.5 Km, B8000FWB, Bahia Blanca, Argentina
- Departamento de Biología, Bioquímica y Farmacia, Universidad Nacional del Sur (UNS), San Juan 670, B8000ICN, Bahia Blanca, Argentina
| | - Noelia Soledad La Colla
- Instituto Argentino de Oceanografía, CONICET - Universidad Nacional del Sur (UNS), Camino Carrindanga 7.5 Km, B8000FWB, Bahia Blanca, Argentina
| | - Analía Verónica Serra
- Instituto Argentino de Oceanografía, CONICET - Universidad Nacional del Sur (UNS), Camino Carrindanga 7.5 Km, B8000FWB, Bahia Blanca, Argentina
| | - Sandra Elizabeth Botté
- Instituto Argentino de Oceanografía, CONICET - Universidad Nacional del Sur (UNS), Camino Carrindanga 7.5 Km, B8000FWB, Bahia Blanca, Argentina
- Departamento de Biología, Bioquímica y Farmacia, Universidad Nacional del Sur (UNS), San Juan 670, B8000ICN, Bahia Blanca, Argentina
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Araujo ASF, Jia X, Miranda ARL, Pereira APDA, Melo VMM, Rocha SMB, Costa RM, Saraiva TCDS, Mendes LW, Salles JF. Changes in the bacterial rare biosphere after permanent application of composted tannery sludge in a tropical soil. CHEMOSPHERE 2023; 313:137487. [PMID: 36521745 DOI: 10.1016/j.chemosphere.2022.137487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Revised: 11/21/2022] [Accepted: 12/03/2022] [Indexed: 06/17/2023]
Abstract
Composted tannery sludge (CTS) promotes shifts in soil chemical properties, affecting microbial communities. Although the effect of CTS application on the bacterial community has been studied, it is unclear whether this impact discriminates between the dominant and rare species. This present study investigated how the dominant and rare bacterial communities respond over time to different concentrations of CTS application (0, 2.5, 5, 10, and 20 tons/ha) for 180 days. The richness of operational taxonomic units (OTU) was 30-fold higher in the rare than in the dominant biosphere. While some phyla shifted their relative abundance differently in the dominant and rare biosphere, some genera increased their relative abundance under higher CTS concentrations, such as Nocardioides (∼100%), Rubrobacter (∼300%), and Nordella (∼400%). Undominated processes largely governed the dominant biosphere (76.97%), followed by homogeneous (12.51%) and variable (8.03%) selection, and to a lesser extent, the dispersal limitation (2.48%). The rare biosphere was driven by the CTS application as evidenced by the exclusively homogeneous selection (100%). This study showed that the rare biosphere was more sensitive to changes in soil chemical parameters due to CTS application, which evidences the importance explore this portion of the bacterial community for its biotechnological use in contaminated soils.
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Affiliation(s)
| | - Xiu Jia
- Microbial Ecology Cluster, Genomics Research in Ecology and Evolution in Nature (GREEN), Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen 9747AG, the Netherlands
| | | | | | | | | | | | | | - Lucas William Mendes
- Centro de Energia Nuclear na Agricultura, Universidade de Sao Paulo, Piracicaba, SP Brazil
| | - Joana Falcão Salles
- Microbial Ecology Cluster, Genomics Research in Ecology and Evolution in Nature (GREEN), Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Groningen 9747AG, the Netherlands
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Arboleda-Baena C, Pareja CB, Pla I, Logares R, De la Iglesia R, Navarrete SA. Hidden interactions in the intertidal rocky shore: variation in pedal mucus microbiota among marine grazers that feed on epilithic biofilm communities. PeerJ 2022; 10:e13642. [PMID: 36172502 PMCID: PMC9512015 DOI: 10.7717/peerj.13642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Accepted: 06/07/2022] [Indexed: 01/17/2023] Open
Abstract
In marine ecosystems, most invertebrates possess diverse microbiomes on their external surfaces, such as those found in the pedal mucus of grazing gastropods and chitons that aids displacement on different surfaces. The microbes are then transported around and placed in contact with free-living microbial communities of micro and other macro-organisms, potentially exchanging species and homogenizing microbial composition and structure among grazer hosts. Here, we characterize the microbiota of the pedal mucus of five distantly related mollusk grazers, quantify differences in microbial community structure, mucus protein and carbohydrate content, and, through a simple laboratory experiment, assess their effects on integrated measures of biofilm abundance. Over 665 Amplicon Sequence Variants (ASVs) were found across grazers, with significant differences in abundance and composition among grazer species and epilithic biofilms. The pulmonate limpet Siphonaria lessonii and the periwinkle Echinolittorina peruviana shared similar microbiota. The microbiota of the chiton Chiton granosus, keyhole limpet Fissurella crassa, and scurrinid limpet Scurria araucana differed markedly from one another, and form those of the pulmonate limpet and periwinkle. Flavobacteriaceae (Bacteroidia) and Colwelliaceae (Gammaproteobacteria) were the most common among microbial taxa. Microbial strict specialists were found in only one grazer species. The pedal mucus pH was similar among grazers, but carbohydrate and protein concentrations differed significantly. Yet, differences in mucus composition were not reflected in microbial community structure. Only the pedal mucus of F. crassa and S. lessonii negatively affected the abundance of photosynthetic microorganisms in the biofilm, demonstrating the specificity of the pedal mucus effects on biofilm communities. Thus, the pedal mucus microbiota are distinct among grazer hosts and can affect and interact non-trophically with the epilithic biofilms on which grazers feed, potentially leading to microbial community coalescence mediated by grazer movement. Further studies are needed to unravel the myriad of non-trophic interactions and their reciprocal impacts between macro- and microbial communities.
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Affiliation(s)
- Clara Arboleda-Baena
- Estación Costera de Investigaciones Marinas and Center for Applied Ecology and Sustainability (CAPES), Pontificia Universidad Católica de Chile, El Tabo, Chile,Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago de Chile, Región Metropolitana, Chile
| | - Claudia Belén Pareja
- Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago de Chile, Región Metropolitana, Chile
| | - Isadora Pla
- Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago de Chile, Región Metropolitana, Chile
| | - Ramiro Logares
- Institut de Ciències del Mar (ICM), CSIC, Barcelona, Catalonia, Spain
| | - Rodrigo De la Iglesia
- Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago de Chile, Región Metropolitana, Chile,Marine Energy Research & Innovation Center (MERIC), Santiago de Chile, Chile
| | - Sergio Andrés Navarrete
- Estación Costera de Investigaciones Marinas and Center for Applied Ecology and Sustainability (CAPES), Pontificia Universidad Católica de Chile, El Tabo, Chile,Marine Energy Research & Innovation Center (MERIC), Santiago de Chile, Chile,Centro Basal COPAS-COASTAL, Universidad de Concepción
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10
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Dey P, Malik A, Singh DK, Haange SB, von Bergen M, Jehmlich N. Insight Into the Molecular Mechanisms Underpinning the Mycoremediation of Multiple Metals by Proteomic Technique. Front Microbiol 2022; 13:872576. [PMID: 35756008 PMCID: PMC9221998 DOI: 10.3389/fmicb.2022.872576] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Accepted: 04/07/2022] [Indexed: 11/13/2022] Open
Abstract
We investigated the fungus Aspergillus fumigatus PD-18 responses when subjected to the multimetal combination (Total Cr, Cd2+, Cu2+, Ni2+, Pb2+, and Zn2+) in synthetic composite media. To understand how multimetal stress impacts fungal cells at the molecular level, the cellular response of A. fumigatus PD-18 to 30 mg/L multimetal stress (5 mg/L of each heavy metal) was determined by proteomics. The comparative fungal proteomics displayed the remarkable inherent intracellular and extracellular mechanism of metal resistance and tolerance potential of A. fumigatus PD-18. This study reported 2,238 proteins of which 434 proteins were exclusively expressed in multimetal extracts. The most predominant functional class expressed was for cellular processing and signaling. The type of proteins and the number of proteins that were upregulated due to various stress tolerance mechanisms were post-translational modification, protein turnover, and chaperones (42); translation, ribosomal structure, and biogenesis (60); and intracellular trafficking, secretion, and vesicular transport (18). In addition, free radical scavenging antioxidant proteins, such as superoxide dismutase, were upregulated upto 3.45-fold and transporter systems, such as protein transport (SEC31), upto 3.31-fold to combat the oxidative stress caused by the multiple metals. Also, protein–protein interaction network analysis revealed that cytochrome c oxidase and 60S ribosomal protein played key roles to detoxify the multimetal. To the best of our knowledge, this study of A. fumigatus PD-18 provides valuable insights toward the growing research in comprehending the metal microbe interactions in the presence of multimetal. This will facilitate in development of novel molecular markers for contaminant bioremediation.
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Affiliation(s)
- Priyadarshini Dey
- Applied Microbiology Lab, Centre for Rural Development and Technology, Indian Institute of Technology Delhi, New Delhi, India
- Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research, Helmholtz Association of German Research Centres (HZ), Leipzig, Germany
- Department of Biotechnology, MS Ramaiah Institute of Technology, Bengaluru, India
| | - Anushree Malik
- Applied Microbiology Lab, Centre for Rural Development and Technology, Indian Institute of Technology Delhi, New Delhi, India
| | - Dileep Kumar Singh
- Department of Zoology, Faculty of Science, University of Delhi, New Delhi, India
| | - Sven-Bastiaan Haange
- Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research, Helmholtz Association of German Research Centres (HZ), Leipzig, Germany
| | - Martin von Bergen
- Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research, Helmholtz Association of German Research Centres (HZ), Leipzig, Germany
- Institute of Biochemistry, Faculty of Biosciences, Pharmacy and Psychology, University of Leipzig, Leipzig, Germany
- German Centre for Integrative Biodiversity, Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Nico Jehmlich
- Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research, Helmholtz Association of German Research Centres (HZ), Leipzig, Germany
- *Correspondence: Nico Jehmlich,
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Moraetis D, Al-Suhai AS, Pracejus B, Pyrgaki K, Argyraki A, Dermatas D. Origin of Cr in Alluvial and Aeolian Sediments and Ultramafic Rocks in Sultanate of Oman: Magnetic Fractionation and Sunlight Effect. BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2021; 106:458-464. [PMID: 32676684 DOI: 10.1007/s00128-020-02931-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2020] [Accepted: 07/02/2020] [Indexed: 06/11/2023]
Abstract
The changing climatic conditions are imposing a vital re-consideration on the hydro-chemical pathways for contaminants. The circumference Mediterranean countries will be possibly under imminent water stress. The present study attempts to identify the sources and the leaching capacity of Cr(VI) in a coastal alluvial fan and aeolian soil and in a serpentine soil in an area offering an aridity analogue, like Oman. Magnetic separation and different leaching media were applied along with Cr(VI) sorption experiments in daylight (open air) and in laboratory conditions (without direct sunlight). In most of the samples the released Cr(VI) concentration was higher that the drinking water standard (50 μg L-1). Magnetic soil fraction has the highest bulk Cr concentration, however, the leaching of Cr with phosphate extraction solution was high in the no-magnetic fraction. Immobilization of Cr(VI) was higher in the sunlight conditions for the serpentine soil and not for the alluvial/aeolian soils.
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Affiliation(s)
- D Moraetis
- Department of Applied Physics and Astronomy, University of Sharjah, P.O. 27272, Sharjah, United Arab Emirates.
| | - A S Al-Suhai
- Department of Earth Sciences, Sultan Qaboos University, Al-Khod, 123, Muscat, Oman
| | - B Pracejus
- Department of Earth Sciences, Sultan Qaboos University, Al-Khod, 123, Muscat, Oman
| | - K Pyrgaki
- Department of Geology and Geoenvironment, National and Kapodistrian University of Athens, Athens, Greece
| | - A Argyraki
- Department of Geology and Geoenvironment, National and Kapodistrian University of Athens, Athens, Greece
| | - D Dermatas
- Department of Water Resources and Environmental Engineering, School of Civil Engineering, National Technical University of Athens, Athens, Greece
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Ma L, Chen N, Feng C. Practical application potential of microbial-phosphorus minerals-alginate immobilized particles on chromium(VI)-bioreduction. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 742:140685. [PMID: 32721757 DOI: 10.1016/j.scitotenv.2020.140685] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Revised: 06/24/2020] [Accepted: 06/30/2020] [Indexed: 06/11/2023]
Abstract
Due to the widespread use of chromium (Cr) across various industrial processes, the process of in-situ remediation of Cr-contaminated groundwater has received extensive attention. Previous studies of solid-phase phosphorus sources and microbial immobilization co-strengthening materials have demonstrated that their performance in continuous flow reactions is of great significance towards practical application of these technologies. It was suggested that Microbial-Phosphorus minerals-Alginate (MPA) immobilized particles showed superior performance (high Cr removal efficiency, low phosphorus surplus, and high environmental resistance) in comparisons of non-immobilization systems and different immobilization methods under continuous flow conditions. Microbial community analysis revealed significant differences between different systems as well as between variations in environmental factors, providing further support for the above conclusions. Synthetic wastewater (synthesized by actual groundwater) was also introduced to further verify the practical application potential of MPA immobilized particles. The results of this study provide a new insight and relevant bench scale data to support the enhancement of in-situ Cr(VI) bioremediation.
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Affiliation(s)
- Linlin Ma
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, PR China
| | - Nan Chen
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, PR China.
| | - Chuanping Feng
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, PR China
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