1
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Urayama SI, Zhao YJ, Kuroki M, Chiba Y, Ninomiya A, Hagiwara D. Greetings from virologists to mycologists: A review outlining viruses that live in fungi. MYCOSCIENCE 2024; 65:1-11. [PMID: 39239117 PMCID: PMC11371549 DOI: 10.47371/mycosci.2023.11.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 11/25/2023] [Accepted: 11/26/2023] [Indexed: 09/07/2024]
Abstract
Viruses are genetic elements that parasitize self-replicating cells. Therefore, organisms parasitized by viruses are not limited to animals and plants but also include microorganisms. Among these, viruses that parasitize fungi are known as mycoviruses. Mycoviruses with an RNA genome persistently replicate inside fungal cells and coevolve with their host cells, similar to a cellular organelle. Within host cells, mycoviruses can modulate various fungal characteristics and activities, including pathogenicity and the production of enzymes and secondary metabolites. In this review, we provide an overview of the mycovirus research field as introduction to fungal researchers. Recognition of all genetic elements in fungi aids towards better understanding and control of fungi, and makes fungi a significant model system for studying microorganisms containing multiple genetic elements.
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Affiliation(s)
- Syun-Ichi Urayama
- a Department of Life and Environmental Sciences, Laboratory of Fungal Interaction and Molecular Biology (donated by IFO), University of Tsukuba
- b Microbiology Research Center for Sustainability (MiCS), University of Tsukuba
| | - Yan-Jie Zhao
- a Department of Life and Environmental Sciences, Laboratory of Fungal Interaction and Molecular Biology (donated by IFO), University of Tsukuba
| | - Misa Kuroki
- c Department of Biotechnology, Laboratory of Brewing Microbiology (donated by Kikkoman), The University of Tokyo
| | - Yuto Chiba
- d School of Agriculture, Meiji University
| | - Akihiro Ninomiya
- e Graduate School of Agricultural and Life Sciences, Laboratory of Aquatic Natural Products Chemistry, The University of Tokyo
| | - Daisuke Hagiwara
- a Department of Life and Environmental Sciences, Laboratory of Fungal Interaction and Molecular Biology (donated by IFO), University of Tsukuba
- b Microbiology Research Center for Sustainability (MiCS), University of Tsukuba
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Arai H, Legeai F, Kageyama D, Sugio A, Simon JC. Genomic insights into Spiroplasma endosymbionts that induce male-killing and protective phenotypes in the pea aphid. FEMS Microbiol Lett 2024; 371:fnae027. [PMID: 38632047 DOI: 10.1093/femsle/fnae027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 04/12/2024] [Accepted: 04/16/2024] [Indexed: 04/19/2024] Open
Abstract
The endosymbiotic bacteria Spiroplasma (Mollicutes) infect diverse plants and arthropods, and some of which induce male killing, where male hosts are killed during development. Male-killing Spiroplasma strains belong to either the phylogenetically distant Citri-Poulsonii or Ixodetis groups. In Drosophila flies, Spiroplasma poulsonii induces male killing via the Spaid toxin. While Spiroplasma ixodetis infects a wide range of insects and arachnids, little is known about the genetic basis of S. ixodetis-induced male killing. Here, we analyzed the genome of S. ixodetis strains in the pea aphid Acyrthosiphon pisum (Aphididae, Hemiptera). Genome sequencing constructed a complete genome of a male-killing strain, sAp269, consisting of a 1.5 Mb circular chromosome and an 80 Kb plasmid. sAp269 encoded putative virulence factors containing either ankyrin repeat, ovarian tumor-like deubiquitinase, or ribosome inactivating protein domains, but lacked the Spaid toxin. Further comparative genomics of Spiroplasma strains in A. pisum biotypes adapted to different host plants revealed their phylogenetic associations and the diversity of putative virulence factors. Although the mechanisms of S. ixodetis-induced male killing in pea aphids remain elusive, this study underlines the dynamic genome evolution of S. ixodetis and proposes independent acquisition events of male-killing mechanisms in insects.
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Affiliation(s)
- Hiroshi Arai
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), 1-2 Owashi, Tsukuba, Ibaraki 305-0851, Japan
| | - Fabrice Legeai
- IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, France
| | - Daisuke Kageyama
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), 1-2 Owashi, Tsukuba, Ibaraki 305-0851, Japan
| | - Akiko Sugio
- IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, France
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Nagamine K, Kanno Y, Sahara K, Fujimoto T, Yoshido A, Ishikawa Y, Terao M, Kageyama D, Shintani Y. Male-killing virus in a noctuid moth Spodoptera litura. Proc Natl Acad Sci U S A 2023; 120:e2312124120. [PMID: 37931114 PMCID: PMC10655585 DOI: 10.1073/pnas.2312124120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 09/28/2023] [Indexed: 11/08/2023] Open
Abstract
A female-biased sex ratio is considered advantageous for the cytoplasmic elements that inhabit sexually reproducing organisms. There are numerous examples of bacterial symbionts in the arthropod cytoplasm that bias the host sex ratio toward females through various means, including feminization and male killing. Recently, maternally inherited RNA viruses belonging to the family Partitiviridae were found to cause male killing in moths and flies, but it was unknown whether male-killing viruses were restricted to Partitiviridae or could be found in other taxa. Here, we provide compelling evidence that a maternally inherited RNA virus, Spodoptera litura male-killing virus (SlMKV), selectively kills male embryos of the tobacco caterpillar Spodoptera litura, resulting in all-female broods. SlMKV injected into uninfected S. litura can also be inherited maternally and causes male killing. SlMKV has five genomic segments encoding seven open reading frames, has no homolog of known male-killing genes, and belongs to an unclassified group of arthropod-specific viruses closely related to Tolivirales. When transinfected into larvae, both male and female recipients allow SlMKV to proliferate, but only males die at the pupal stage. The viral RNA levels in embryonic and pupal male killing suggest that the mechanism of male killing involves the constitutive expression of viral products that are specifically lethal to males, rather than the male-specific expression of viral products. Our results, together with recent findings on male-killing partiti-like viruses, suggest that diverse viruses in arthropods tend to acquire male killing independently and that such viruses may be important components of intragenomic conflict in arthropods.
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Affiliation(s)
- Keisuke Nagamine
- Department of Environmental and Horticultural Sciences, Minami Kyushu University, Miyakonojo, Miyazaki885-0035, Japan
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, Tsukuba, Ibaraki305-0851, Japan
| | - Yoshiaki Kanno
- Department of Environmental and Horticultural Sciences, Minami Kyushu University, Miyakonojo, Miyazaki885-0035, Japan
| | - Ken Sahara
- Faculty of Agriculture, Iwate University, Morioka, Iwate020-8550, Japan
| | - Toshiaki Fujimoto
- Faculty of Agriculture, Iwate University, Morioka, Iwate020-8550, Japan
| | - Atsuo Yoshido
- Faculty of Agriculture, Iwate University, Morioka, Iwate020-8550, Japan
- Institute of Entomology, Biology Centre of the Czech Academy of Sciences, České Budějovice370 05, Czech Republic
| | - Yukio Ishikawa
- Faculty of Agriculture, Setsunan University, Hirakata, Osaka573-0101, Japan
| | - Misato Terao
- Department of Environmental and Horticultural Sciences, Minami Kyushu University, Miyakonojo, Miyazaki885-0035, Japan
| | - Daisuke Kageyama
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, Tsukuba, Ibaraki305-0851, Japan
| | - Yoshinori Shintani
- Department of Environmental and Horticultural Sciences, Minami Kyushu University, Miyakonojo, Miyazaki885-0035, Japan
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4
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Kageyama D, Harumoto T, Nagamine K, Fujiwara A, Sugimoto TN, Jouraku A, Tamura M, Katoh TK, Watada M. A male-killing gene encoded by a symbiotic virus of Drosophila. Nat Commun 2023; 14:1357. [PMID: 36914655 PMCID: PMC10011393 DOI: 10.1038/s41467-023-37145-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Accepted: 03/03/2023] [Indexed: 03/16/2023] Open
Abstract
In most eukaryotes, biparentally inherited nuclear genomes and maternally inherited cytoplasmic genomes have different evolutionary interests. Strongly female-biased sex ratios that are repeatedly observed in various arthropods often result from the male-specific lethality (male-killing) induced by maternally inherited symbiotic bacteria such as Spiroplasma and Wolbachia. However, despite some plausible case reports wherein viruses are raised as male-killers, it is not well understood how viruses, having much smaller genomes than bacteria, are capable of inducing male-killing. Here we show that a maternally inherited double-stranded RNA (dsRNA) virus belonging to the family Partitiviridae (designated DbMKPV1) induces male-killing in Drosophila. DbMKPV1 localizes in the cytoplasm and possesses only four genes, i.e., one gene in each of the four genomic segments (dsRNA1-dsRNA4), in contrast to ca. 1000 or more genes possessed by Spiroplasma or Wolbachia. We also show that a protein (designated PVMKp1; 330 amino acids in size), encoded by a gene on the dsRNA4 segment, is necessary and sufficient for inducing male-killing. Our results imply that male-killing genes can be easily acquired by symbiotic viruses through reassortment and that symbiotic viruses are hidden players in arthropod evolution. We anticipate that host-manipulating genes possessed by symbiotic viruses can be utilized for controlling arthropods.
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Affiliation(s)
- Daisuke Kageyama
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, Ibaraki, 305-0851, Japan.
| | - Toshiyuki Harumoto
- Hakubi Center for Advanced Research, Kyoto University, Yoshida-honmachi, Sakyo-ku, Kyoto, 606-8501, Japan
- Graduate School of Biostudies, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto, 606-8501, Japan
| | - Keisuke Nagamine
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, Ibaraki, 305-0851, Japan
| | - Akiko Fujiwara
- Center for Food Science and Wellness, Gunma University, 4-2 Aramaki, Maebashi, Gunma, 371-8510, Japan
- Chemical Genomics Research Group, RIKEN Center for Sustainable Resource Science, Wako, Saitama, 351-0198, Japan
| | - Takafumi N Sugimoto
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, Ibaraki, 305-0851, Japan
| | - Akiya Jouraku
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, 1-2 Owashi, Tsukuba, Ibaraki, 305-0851, Japan
| | - Masaru Tamura
- Division of Food Safety Information, National Institute of Health Sciences, 3-25-26 Tonomachi, Kawasaki-ku, Kawasaki, Kanagawa, 210-9501, Japan
| | - Takehiro K Katoh
- Graduate School of Science and Engineering, Ehime University, Matsuyama, Ehime, 780-8857, Japan
- Department of Biological Sciences, Tokyo Metropolitan University, 1-1 Minamiosawa, Hachioji, Tokyo, 192-0397, Japan
| | - Masayoshi Watada
- Graduate School of Science and Engineering, Ehime University, Matsuyama, Ehime, 780-8857, Japan.
- Department of Biological Sciences, Tokyo Metropolitan University, 1-1 Minamiosawa, Hachioji, Tokyo, 192-0397, Japan.
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Heinig-Hartberger M, Hellhammer F, Zöller DDJA, Dornbusch S, Bergmann S, Vocadlova K, Junglen S, Stern M, Lee KZ, Becker SC. Culex Y Virus: A Native Virus of Culex Species Characterized In Vivo. Viruses 2023; 15:235. [PMID: 36680275 PMCID: PMC9863036 DOI: 10.3390/v15010235] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 01/06/2023] [Accepted: 01/11/2023] [Indexed: 01/17/2023] Open
Abstract
Mosquitoes are vectors of various pathogens that cause diseases in humans and animals. To prevent the outbreak of mosquito-borne diseases, it is essential to control vector populations, as treatment or vaccination for mosquito-borne diseases are often unavailable. Insect-specific viruses (ISVs) have previously been described as being potentially helpful against arboviral disease outbreaks. In this study, we present the first in vivo characterization of the ISV Culex Y virus (CYV). CYV was first isolated from free-living Culex pipiens mosquitoes in 2010; then, it was found in several mosquito cell lines in a further study in 2018. For mammalian cells, we were able to confirm that CYV does not replicate as it was previously described. Additionally, we found that CYV does not replicate in honey bees or locusts. However, we detected replication in the Culex pipiens biotype molestus, Aedes albopictus, and Drosophila melanogaster, thus indicating dipteran specificity. We detected significantly higher mortality in Culex pipiens biotype molestus males and Drosophila melanogaster, but not in Aedes albopictus and female Culex pipiens biotype molestus. CYV could not be transmitted transovarially to offspring, but we detected venereal transmission as well as CYV in mosquitos' saliva, indicating that an oral route of infection would also be possible. CYV's dipteran specificity, transmission routes, and killing effect with respect to Culex males may be used as powerful tools with which to destabilize arbovirus vector populations in the future.
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Affiliation(s)
- Mareike Heinig-Hartberger
- Institute for Parasitology, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
- Research Center for Emerging Infections and Zoonoses, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
| | - Fanny Hellhammer
- Institute for Parasitology, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
- Research Center for Emerging Infections and Zoonoses, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
| | - David D. J. A. Zöller
- Institute for Parasitology, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
- Research Center for Emerging Infections and Zoonoses, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
| | - Susann Dornbusch
- Institute for Parasitology, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
- Research Center for Emerging Infections and Zoonoses, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
| | - Stella Bergmann
- Institute for Physiology and Cell Biology, University of Veterinary Medicine Hannover, Bischofsholer Damm 15, 30173 Hannover, Germany
| | - Katerina Vocadlova
- Fraunhofer Institute for Molecular Biology and Applied Ecology (IME), Ohlebergsweg 12, 35392 Giessen, Germany
| | - Sandra Junglen
- Institute of Virology, Charité Universitätsmedizin Berlin, Corporate Member of Free University Berlin, Humboldt-University Berlin, and Berlin Institute of Health, Chariteplatz 1, 10117 Berlin, Germany
| | - Michael Stern
- Institute for Physiology and Cell Biology, University of Veterinary Medicine Hannover, Bischofsholer Damm 15, 30173 Hannover, Germany
| | - Kwang-Zin Lee
- Fraunhofer Institute for Molecular Biology and Applied Ecology (IME), Ohlebergsweg 12, 35392 Giessen, Germany
| | - Stefanie C. Becker
- Institute for Parasitology, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
- Research Center for Emerging Infections and Zoonoses, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
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6
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Arai H, Inoue MN, Kageyama D. Male-killing mechanisms vary between Spiroplasma species. Front Microbiol 2022; 13:1075199. [PMID: 36519169 PMCID: PMC9742256 DOI: 10.3389/fmicb.2022.1075199] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Accepted: 11/08/2022] [Indexed: 03/11/2024] Open
Abstract
Male-killing, a male-specific death of arthropod hosts during development, is induced by Spiroplasma (Mollicutes) endosymbionts of the Citri-Poulsonii and the Ixodetis groups, which are phylogenetically distant groups. Spiroplasma poulsonii induces male-killing in Drosophila melanogaster (Diptera) using the Spaid toxin that harbors ankyrin repeats, whereas little is known about the origin and mechanisms of male-killing induced by Spiroplasma ixodetis. Here, we analyzed the genome and the biological characteristics of a male-killing S. ixodetis strain sHm in the moth Homona magnanima (Tortricidae, Lepidoptera). Strain sHm harbored a 2.1 Mb chromosome and two potential plasmids encoding Type IV effectors, putatively involved in virulence and host-symbiont interactions. Moreover, sHm did not harbor the spaid gene but harbored 10 ankyrin genes that were homologous to those in other S. ixodetis strains. In contrast to the predominant existence of S. poulsonii in hemolymph, our quantitative PCR assays revealed a systemic distribution of strain sHm in H. magnanima, with particularly high titers in Malpighian tubules but low titers in hemolymph. Furthermore, transinfection assays confirmed that strain sHm can infect cultured cells derived from distantly related insects, namely Aedes albopictus (Diptera) and Bombyx mori (Lepidoptera). These results suggest different origins and characteristics of S. ixodetis- and S. poulsonii-induced male-killing.
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Affiliation(s)
- Hiroshi Arai
- United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Fuchu, Japan
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan
| | - Maki N. Inoue
- United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Fuchu, Japan
| | - Daisuke Kageyama
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, Japan
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7
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Ballinger MJ, Christian RC, Moore LD, Taylor DJ, Sabet A. Evolution and Diversity of Inherited Viruses in the Nearctic Phantom Midge, Chaoborus americanus. Virus Evol 2022; 8:veac018. [PMID: 35356639 PMCID: PMC8963322 DOI: 10.1093/ve/veac018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Revised: 02/23/2022] [Accepted: 03/09/2022] [Indexed: 11/15/2022] Open
Abstract
Abstract
Inherited mutualists, parasites, and commensals occupy one of the most intimate ecological niches available to invertebrate-associated microbes. How this transmission environment influences microbial evolution is increasingly understood for inherited bacterial symbionts, but in viruses, research on the prevalence of vertical transmission and its effects on viral lineages is still maturing. The evolutionary stability of this strategy remains difficult to assess, although phylogenetic evidence of frequent host shifts and selective sweeps have been interpreted as strategies favoring parasite persistence. In this study, we describe and investigate a natural insect system in which species-wide sweeps have been restricted by the isolation of host populations. Previous work identified evidence of pronounced mitochondrial genetic structure among North American populations of the phantom midge, Chaoborus americanus. Here we take advantage of the geographical isolation in this species to investigate the diversity and persistence of its inherited virome. We identify eight novel RNA viruses from six families and use small RNA sequencing in reproductive tissues to provide evidence of vertical transmission. We report region-specific virus strains that mirror the continental phylogeography of the host, demonstrating that members of the inherited virome have independently persisted in parallel host lineages since they last shared a common ancestor in the Mid Pleistocene. We find that the small interfering RNA pathway, a frontline of antiviral defense in insects, targets members of this inherited virome. Finally, our results suggest that the Piwi-mediated RNA silencing pathway is unlikely to function as a general antiviral defense in Chaoborus, in contrast to its role in some mosquitoes. However, we also report that the PIWI-interacting RNA pathway generates abundant piRNAs from endogenous viral elements closely related to actively infecting inherited viruses, potentially helping to explain idiosyncratic patterns of virus-specific Piwi targeting in this insect.
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Affiliation(s)
- Matthew J Ballinger
- Department of Biological Sciences, Mississippi State University, Mississippi, USA
| | - Rebecca C Christian
- Department of Biological Sciences, Mississippi State University, Mississippi, USA
| | - Logan D Moore
- Department of Biological Sciences, Mississippi State University, Mississippi, USA
| | - Derek J Taylor
- Department of Biological Sciences, The State University of New York at Buffalo, New York, USA
| | - Afsoon Sabet
- Department of Biological Sciences, Mississippi State University, Mississippi, USA
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Du S, Ye F, Wang Q, Liang Y, Wan W, Guo J, Liu W. Multiple Data Demonstrate That Bacteria Regulating Reproduction Could Be Not the Cause for the Thelytoky of Diglyphus wani (Hymenoptera: Eulophidae). INSECTS 2021; 13:9. [PMID: 35055852 PMCID: PMC8777843 DOI: 10.3390/insects13010009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/13/2021] [Revised: 12/09/2021] [Accepted: 12/17/2021] [Indexed: 12/04/2022]
Abstract
In Hymenoptera parasitoids, the reproductive mode is arrhenotoky, while a few species reproduce by thelytoky. The thelytoky of Hymenoptera parasitoids is generally genetically determined by the parasitoids themselves or induced by bacteria, including Wolbachia, Cardinium, and Rickettsia. Diglyphus wani (Hymenoptera: Eulophidae), a recently reported thelytokous species is a main parasitoid attacking agromyzid leafminers. To assess whether endosymbionts induce thelytoky in D. wani, we performed universal PCR detection and sequenced the V3-V4 region of 16S ribosomal RNA gene. In addition, bacteria were removed through high-temperature and antibiotic treatments, and the localized bacteria were detected using FISH. Based on general PCR detection, Wolbachia, Cardinium, Rickettsia, Arsenophonus, Spiroplasma, and Microsporidia were absent in laboratory and field individuals of thelytokous D. wani. Furthermore, 16S rRNA gene sequencing revealed that the dominant endosymbionts in thelytokous D. wani were not reproductive manipulators. High-temperature and antibiotic treatment for five consecutive generations cannot reverse the thelytokous pattern of D. wani, and no male offspring were produced. Moreover, no bacterial spots were found in the ovaries of D. wani. Thus, it is considered that the thelytoky of D. wani does not result in the presence of endosymbionts. This species is thus the second reported eulophid parasitoid whose thelytoky appears not to be associated with endosymbionts.
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Affiliation(s)
- Sujie Du
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.D.); (F.Y.); (Q.W.); (Y.L.); (W.W.)
| | - Fuyu Ye
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.D.); (F.Y.); (Q.W.); (Y.L.); (W.W.)
| | - Qijing Wang
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.D.); (F.Y.); (Q.W.); (Y.L.); (W.W.)
- Institute of Entomological Science, College of Agriculture, Yangtze University, Jingzhou 434025, China
| | - Yongxuan Liang
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.D.); (F.Y.); (Q.W.); (Y.L.); (W.W.)
- Department of Life Sciences, Hunan Normal University, Changsha 410081, China
| | - Weijie Wan
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.D.); (F.Y.); (Q.W.); (Y.L.); (W.W.)
| | - Jianyang Guo
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.D.); (F.Y.); (Q.W.); (Y.L.); (W.W.)
| | - Wanxue Liu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.D.); (F.Y.); (Q.W.); (Y.L.); (W.W.)
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9
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Yin H, Dong Z, Wang X, Lu S, Xia F, Abuduwaili A, Bi Y, Li Y. Metagenomic Analysis of Marigold: Mixed Infection Including Two New Viruses. Viruses 2021; 13:1254. [PMID: 34203118 PMCID: PMC8310094 DOI: 10.3390/v13071254] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 05/25/2021] [Accepted: 06/08/2021] [Indexed: 11/16/2022] Open
Abstract
Marigold plants with symptoms of mosaic, crinkle, leaf curl and necrosis were observed and small RNA and ribo-depleted total RNA deep sequencing were conducted to identify the associated viruses. Broad bean wilt virus 2, cucumber mosaic virus, turnip mosaic virus, a new potyvirus tentatively named marigold mosaic virus (MMV) and a new partitivirus named as marigold cryptic virus (MCV) were finally identified. Complete genome sequence analysis showed MMV was 9811 nt in length, encoding a large polyprotein with highest aa sequence identity (57%) with the putative potyvirus polygonatumkingianum virus 1. Phylogenetic analysis with the definite potyviruses based on the polyprotein sequence showed MMV clustered closest to plum pox virus. The complete genome of MCV comprised of dsRNA1 (1583 bp) and dsRNA2 (1459 bp), encoding the RNA-dependent RNA polymerase (RdRp), and coat protein (CP), respectively. MCV RdRp shared the highest (75.7%) aa sequence identity with the unclassified partitivirus ambrosia cryptic virus 2, and 59.0%, 57.1%, 56.1%, 54.5% and 33.7% with the corresponding region of the definite delta-partitiviruses, pepper cryptic virus 2, beet cryptic virus 3, beet cryptic virus 2, pepper cryptic virus 1 and fig cryptic virus, respectively. Phylogenetic analysis based on the RdRp aa sequence showed MCV clustered into the delta-partitivirus group. These findings enriched our knowledge of viruses infecting marigold, but the association of the observed symptom and the identified viruses and the biological characterization of the new viruses should be further investigated.
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Affiliation(s)
- Hang Yin
- College of Bioscience and Resource Environment, Beijing University of Agriculture, Beijing 102206, China; (H.Y.); (Z.D.); (X.W.); (S.L.); (A.A.); (Y.B.)
- Key Laboratory for Northern Urban Agriculture of Ministry of Agriculture and Rural Affairs, Department of Plant Protection, Beijing University of Agriculture, Beijing 102206, China
| | - Zheng Dong
- College of Bioscience and Resource Environment, Beijing University of Agriculture, Beijing 102206, China; (H.Y.); (Z.D.); (X.W.); (S.L.); (A.A.); (Y.B.)
- Key Laboratory for Northern Urban Agriculture of Ministry of Agriculture and Rural Affairs, Department of Plant Protection, Beijing University of Agriculture, Beijing 102206, China
| | - Xulong Wang
- College of Bioscience and Resource Environment, Beijing University of Agriculture, Beijing 102206, China; (H.Y.); (Z.D.); (X.W.); (S.L.); (A.A.); (Y.B.)
- Key Laboratory for Northern Urban Agriculture of Ministry of Agriculture and Rural Affairs, Department of Plant Protection, Beijing University of Agriculture, Beijing 102206, China
| | - Shuhao Lu
- College of Bioscience and Resource Environment, Beijing University of Agriculture, Beijing 102206, China; (H.Y.); (Z.D.); (X.W.); (S.L.); (A.A.); (Y.B.)
- Key Laboratory for Northern Urban Agriculture of Ministry of Agriculture and Rural Affairs, Department of Plant Protection, Beijing University of Agriculture, Beijing 102206, China
| | - Fei Xia
- Beijing Institute of Landscape Architecture, Beijing 100102, China;
| | - Annihaer Abuduwaili
- College of Bioscience and Resource Environment, Beijing University of Agriculture, Beijing 102206, China; (H.Y.); (Z.D.); (X.W.); (S.L.); (A.A.); (Y.B.)
- Key Laboratory for Northern Urban Agriculture of Ministry of Agriculture and Rural Affairs, Department of Plant Protection, Beijing University of Agriculture, Beijing 102206, China
| | - Yang Bi
- College of Bioscience and Resource Environment, Beijing University of Agriculture, Beijing 102206, China; (H.Y.); (Z.D.); (X.W.); (S.L.); (A.A.); (Y.B.)
- Key Laboratory for Northern Urban Agriculture of Ministry of Agriculture and Rural Affairs, Department of Plant Protection, Beijing University of Agriculture, Beijing 102206, China
| | - Yongqiang Li
- College of Bioscience and Resource Environment, Beijing University of Agriculture, Beijing 102206, China; (H.Y.); (Z.D.); (X.W.); (S.L.); (A.A.); (Y.B.)
- Key Laboratory for Northern Urban Agriculture of Ministry of Agriculture and Rural Affairs, Department of Plant Protection, Beijing University of Agriculture, Beijing 102206, China
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[Osugoroshi virus, a male-killer virus]. Uirusu 2021; 71:63-70. [PMID: 35526996 DOI: 10.2222/jsv.71.63] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
In insects, sex ratio bias is sometimes introduced by feminization, parthenogenesis, cytoplasmic incompatibility, or male-killing. Some intracellular bacteria such as Wolbachia or Spiroplasma has been known as male-killing agents. Here I introduce an example of non-bacterial male-killing agent, Osugoroshi virus found in oriental tea tortrix.
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