• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4610906)   Today's Articles (4157)   Subscriber (49381)
For: Grimwade JE, Leonard AC. Blocking, Bending, and Binding: Regulation of Initiation of Chromosome Replication During the Escherichia coli Cell Cycle by Transcriptional Modulators That Interact With Origin DNA. Front Microbiol 2021;12:732270. [PMID: 34616385 PMCID: PMC8488378 DOI: 10.3389/fmicb.2021.732270] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Accepted: 08/18/2021] [Indexed: 11/25/2022]  Open
Number Cited by Other Article(s)
1
Schumacher MA, Singh RR, Salinas R. Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp. Nucleic Acids Res 2024;52:7354-7366. [PMID: 38832628 PMCID: PMC11229321 DOI: 10.1093/nar/gkae459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 05/02/2024] [Accepted: 05/15/2024] [Indexed: 06/05/2024]  Open
2
Łazowski K, Woodgate R, Fijalkowska IJ. Escherichia coli DNA replication: the old model organism still holds many surprises. FEMS Microbiol Rev 2024;48:fuae018. [PMID: 38982189 PMCID: PMC11253446 DOI: 10.1093/femsre/fuae018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2024] [Revised: 06/26/2024] [Accepted: 07/08/2024] [Indexed: 07/11/2024]  Open
3
Hardcastle M. QnAs with Bruce W. Stillman, Roberta S. Fuller, and Jon M. Kaguni. Proc Natl Acad Sci U S A 2024;121:e2407542121. [PMID: 38758694 PMCID: PMC11161750 DOI: 10.1073/pnas.2407542121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/19/2024]  Open
4
Kasho K, Sakai R, Ito K, Nakagaki W, Satomura R, Jinnouchi T, Ozaki S, Katayama T. Read-through transcription of tRNA underlies the cell cycle-dependent dissociation of IHF from the DnaA-inactivating sequence datA. Front Microbiol 2024;15:1360108. [PMID: 38505555 PMCID: PMC10950094 DOI: 10.3389/fmicb.2024.1360108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Accepted: 02/05/2024] [Indexed: 03/21/2024]  Open
5
Wegrzyn K, Oliwa M, Nowacka M, Zabrocka E, Bury K, Purzycki P, Czaplewska P, Pipka J, Giraldo R, Konieczny I. Rep protein accommodates together dsDNA and ssDNA which enables a loop-back mechanism to plasmid DNA replication initiation. Nucleic Acids Res 2023;51:10551-10567. [PMID: 37713613 PMCID: PMC10602881 DOI: 10.1093/nar/gkad740] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 08/25/2023] [Accepted: 09/08/2023] [Indexed: 09/17/2023]  Open
6
Kohiyama M, Herrick J, Norris V. Open Questions about the Roles of DnaA, Related Proteins, and Hyperstructure Dynamics in the Cell Cycle. Life (Basel) 2023;13:1890. [PMID: 37763294 PMCID: PMC10532879 DOI: 10.3390/life13091890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 08/29/2023] [Accepted: 09/06/2023] [Indexed: 09/29/2023]  Open
7
Kasho K, Ozaki S, Katayama T. IHF and Fis as Escherichia coli Cell Cycle Regulators: Activation of the Replication Origin oriC and the Regulatory Cycle of the DnaA Initiator. Int J Mol Sci 2023;24:11572. [PMID: 37511331 PMCID: PMC10380432 DOI: 10.3390/ijms241411572] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Revised: 07/14/2023] [Accepted: 07/16/2023] [Indexed: 07/30/2023]  Open
8
Yoshida R, Ozaki S, Kawakami H, Katayama T. Single-stranded DNA recruitment mechanism in replication origin unwinding by DnaA initiator protein and HU, an evolutionary ubiquitous nucleoid protein. Nucleic Acids Res 2023;51:6286-6306. [PMID: 37178000 PMCID: PMC10325909 DOI: 10.1093/nar/gkad389] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Revised: 04/18/2023] [Accepted: 05/02/2023] [Indexed: 05/15/2023]  Open
9
Lu C, Yoshida R, Katayama T, Ozaki S. Thermotoga maritima oriC involves a DNA unwinding element with distinct modules and a DnaA-oligomerizing region with a novel directional binding mode. J Biol Chem 2023:104888. [PMID: 37276959 PMCID: PMC10316083 DOI: 10.1016/j.jbc.2023.104888] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 05/23/2023] [Accepted: 05/30/2023] [Indexed: 06/07/2023]  Open
10
Conway C, Beckett MC, Dorman CJ. The DNA relaxation-dependent OFF-to-ON biasing of the type 1 fimbrial genetic switch requires the Fis nucleoid-associated protein. MICROBIOLOGY (READING, ENGLAND) 2023;169:001283. [PMID: 36748578 PMCID: PMC9993118 DOI: 10.1099/mic.0.001283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
11
Ozaki S, Wang D, Wakasugi Y, Itani N, Katayama T. The Caulobacter crescentus DciA promotes chromosome replication through topological loading of the DnaB replicative helicase at replication forks. Nucleic Acids Res 2022;50:12896-12912. [PMID: 36484102 PMCID: PMC9825169 DOI: 10.1093/nar/gkac1146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Revised: 11/04/2022] [Accepted: 12/06/2022] [Indexed: 12/13/2022]  Open
12
Dong MJ, Luo H, Gao F. Ori-Finder 2022: A Comprehensive Web Server for Prediction and Analysis of Bacterial Replication Origins. GENOMICS, PROTEOMICS & BIOINFORMATICS 2022;20:1207-1213. [PMID: 36257484 DOI: 10.1016/j.gpb.2022.10.002] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 09/21/2022] [Accepted: 10/11/2022] [Indexed: 12/26/2022]
13
Yi J, Yeou S, Lee NK. DNA Bending Force Facilitates Z-DNA Formation under Physiological Salt Conditions. J Am Chem Soc 2022;144:13137-13145. [PMID: 35839423 PMCID: PMC9335521 DOI: 10.1021/jacs.2c02466] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
14
Sakiyama Y, Nagata M, Yoshida R, Kasho K, Ozaki S, Katayama T. Concerted actions of DnaA complexes with DNA-unwinding sequences within and flanking replication origin oriC promote DnaB helicase loading. J Biol Chem 2022;298:102051. [PMID: 35598828 PMCID: PMC9198467 DOI: 10.1016/j.jbc.2022.102051] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Revised: 05/11/2022] [Accepted: 05/13/2022] [Indexed: 12/01/2022]  Open
15
Yeo CC, Espinosa M, Venkova T. Editorial: Prokaryotic Communications, Volume II: From Macromolecular Interdomain to Intercellular Talks (Recognition) and Beyond. Front Mol Biosci 2022;9:910673. [PMID: 35558560 PMCID: PMC9086360 DOI: 10.3389/fmolb.2022.910673] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 04/08/2022] [Indexed: 11/14/2022]  Open
16
Convergent evolution in two bacterial replicative helicase loaders. Trends Biochem Sci 2022;47:620-630. [DOI: 10.1016/j.tibs.2022.02.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 02/06/2022] [Accepted: 02/08/2022] [Indexed: 12/23/2022]
PrevPage 1 of 1 1Next
© 2004-2024 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA