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Zhang J, Zou YJ, Wang SL, Zhang WW, Chen QJ, Wang QY, Guan TK, Zhang JY, Zhao MR, Zhang GQ. The inoculation of Bacillus paralicheniformis and Streptomyces thermoviolaceus enhances the lignocellulose degradation and microbial communities during spent mushroom substrate composting. ENVIRONMENTAL RESEARCH 2024; 263:120157. [PMID: 39414111 DOI: 10.1016/j.envres.2024.120157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Revised: 10/10/2024] [Accepted: 10/13/2024] [Indexed: 10/18/2024]
Abstract
The burgeoning global mushroom industry has precipitated challenges related to the efficient and sustainable utilization of spent mushroom substrate (SMS). Composting is regarded as an efficient way for the ecological utilization of SMS. The addition of microbial inoculants can promote the composting process and improve the quality of compost products. This study introduced two bacterial inoculants, Bacillus paralicheniformis HL-05 (BP) and Streptomyces thermoviolaceus LC-10 (ST), into the composting process of SMS. The impact of these inoculants was evaluated through analyses of physicochemical properties, lignocellulose degradation, and high-throughput sequencing to elucidate their ecological roles and optimize the composting process. The results suggest that inoculation with BP and ST significantly prolonged the thermophilic stage by 2-3 days, representing an increase of 22.22-33.33%. Moreover, it boosted the degradation rates of cellulose, hemicellulose, and lignin by 18.37-29.77%, 35.74-50.43%, and 40.32-40.83%, respectively, compared to the control. Furthermore, inoculation rapidly altered the microbial community structure during the rapid temperature-rising stage and strengthened interconnections among composting microorganisms. The microbial inoculation substantially enhanced the proliferation of thermophilic lignocellulose-degrading microorganisms during the thermophilic stage, thereby facilitating the utilization of lignocellulose. This study proposes a novel and effective strategy for SMS composting using microbial inoculants.
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Affiliation(s)
- Jiao Zhang
- College of Plant Science and Technology, Beijing University of Agriculture, Beijing Key Laboratory for Agricultural Application and New Technique, Beijing, 102206, China
| | - Ya-Jie Zou
- State Key Laboratory of Efficient Utilization of Arid and Semi-Arid Arable Land in Northern China, Beijing, 100081, China; Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Shun-Li Wang
- College of Plant Science and Technology, Beijing University of Agriculture, Beijing Key Laboratory for Agricultural Application and New Technique, Beijing, 102206, China
| | - Wei-Wei Zhang
- College of Plant Science and Technology, Beijing University of Agriculture, Beijing Key Laboratory for Agricultural Application and New Technique, Beijing, 102206, China
| | - Qing-Jun Chen
- College of Plant Science and Technology, Beijing University of Agriculture, Beijing Key Laboratory for Agricultural Application and New Technique, Beijing, 102206, China
| | - Qiu-Ying Wang
- College of Plant Science and Technology, Beijing University of Agriculture, Beijing Key Laboratory for Agricultural Application and New Technique, Beijing, 102206, China
| | - Ti-Kun Guan
- College of Plant Science and Technology, Beijing University of Agriculture, Beijing Key Laboratory for Agricultural Application and New Technique, Beijing, 102206, China
| | - Jia-Yan Zhang
- College of Plant Science and Technology, Beijing University of Agriculture, Beijing Key Laboratory for Agricultural Application and New Technique, Beijing, 102206, China
| | - Min-Rui Zhao
- College of Plant Science and Technology, Beijing University of Agriculture, Beijing Key Laboratory for Agricultural Application and New Technique, Beijing, 102206, China
| | - Guo-Qing Zhang
- College of Plant Science and Technology, Beijing University of Agriculture, Beijing Key Laboratory for Agricultural Application and New Technique, Beijing, 102206, China.
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Yu J, Yang S, Zhang X, Liu X, Tang X, Wang L, Chen J, Luo H, Liu C, Song C. Integrating metagenomics and culturomics to uncover the soil bacterial community in Asparagus cochinchinensis cultivation. Front Microbiol 2024; 15:1467864. [PMID: 39697658 PMCID: PMC11652531 DOI: 10.3389/fmicb.2024.1467864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2024] [Accepted: 11/20/2024] [Indexed: 12/20/2024] Open
Abstract
Asparagus cochinchinensis is a medicinal plant in China, which has gained attention owing its protective effect in human health. However, there are seldom studies to systematically reveal the rhizosphere bacterial community of A. cochinchinensis. In this study, we employed metagenomics and culturomics to analyze the bacterial community composition and diversity in continuous rhizosphere soil of A. cochinchinensis. Meanwhile, we assessed the effect of soil physicochemical properties on the bacterial community. Results showed that the most abundant TAXA is a taxon belonging to the family Streptomycetaceae, the genus Mycobacterium and the species Oligotropha carboxidovorans. The bacterial communities across various areas were similar. Significant differences of exchangeable magnesium and available phosphorus level were observed between three groups. Furthermore, bacterial community structure correlated closely with soil physicochemical properties. Additionally, a total of 103 strains were isolated and identified, representing 28 species. Based on this study, the rhizosphere bacterial community of A. cochinchinensis might influence its growth and development. The rhizosphere strains were isolated and their function request further investigation. This study firstly revealed the bacterial community in the A. cochinchinensis rhizosphere soil, providing valuable references for its quality improvement in practical cultivation process.
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Affiliation(s)
- Jingsheng Yu
- Institute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, China
- Traditional Chinese Medicine Health Industry Promotion Center of Dongxing District, Neijiang, China
| | - Shuai Yang
- Institute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, China
- Neijiang Dongxing District Bureau of Health, Neijiang, China
| | - Xiaoyong Zhang
- Committee of Education, Science, Culture and Health of Dongxing District, Neijiang, China
- Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Xiongwei Liu
- Committee of Education, Science, Culture and Health of Dongxing District, Neijiang, China
- School of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guiyang, China
| | - Xuebo Tang
- Committee of Education, Science, Culture and Health of Dongxing District, Neijiang, China
| | - Liuyan Wang
- Committee of Education, Science, Culture and Health of Dongxing District, Neijiang, China
| | - Jinglan Chen
- Committee of Education, Science, Culture and Health of Dongxing District, Neijiang, China
| | - Huimin Luo
- Committee of Education, Science, Culture and Health of Dongxing District, Neijiang, China
| | - Changmin Liu
- Institute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - Chi Song
- Institute of Herbgenomics, Chengdu University of Traditional Chinese Medicine, Chengdu, China
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Tan S, Wang B, Yun Q, Yan W, Xiao T, Zhao Z. Enhancing the Growth of Chili Plants and Soil Health: Synergistic Effects of Coconut Shell Biochar and Bacillus sp. Strain Ya-1 on Rhizosphere Microecology and Plant Metabolism. Int J Mol Sci 2024; 25:11231. [PMID: 39457013 PMCID: PMC11509037 DOI: 10.3390/ijms252011231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2024] [Revised: 10/09/2024] [Accepted: 10/15/2024] [Indexed: 10/28/2024] Open
Abstract
To mitigate soil degradation and decrease dependency on chemical inputs in agriculture, this study examined the joint effects of coconut shell biochar and Bacillus strain Ya-1 on soil fertility, rhizosphere bacterial communities, and the growth of chili (Capsicum annuum L.). A controlled pot experiment with four treatments was conducted: control (CK), biochar only (C), Bacillus strain Ya-1 only (B), and a combination of both (BC). The BC treatment significantly enhanced the soil carbon and available phosphorus contents by approximately 20% and the soil nitrogen content and pH by 18% and 0.3 units, respectively, compared to the control. It also increased microbial biomass carbon and nitrogen by 25% and 30%, respectively, indicating improved soil microbial diversity as shown by the highest Pielou evenness index and Shannon index values. The combined application of biochar and the Ya-1 strain resulted in a 15% increase in chili plant height and a 40% improvement in root dehydrogenase activity, suggesting enhanced nutrient uptake and metabolism. Metabolic profiling showed shifts in stress response and nutrient assimilation under different treatments. Collectively, these results indicate the potential of biochar and microbial inoculants to significantly promote soil and plant health, providing a sustainable strategy to improve agricultural productivity and reduce reliance on chemical inputs.
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Affiliation(s)
- Shimeng Tan
- Key Laboratory of Plant Disease and Pest Control of Hainan Province, Institute of Plant Protection (Research Center of Quality Safety and Standards for Agricultural Products of Hainan Academy of Agricultural Sciences), Hainan Academy of Agricultural Sciences, Haikou 571100, China; (S.T.); (B.W.); (W.Y.)
| | - Bao Wang
- Key Laboratory of Plant Disease and Pest Control of Hainan Province, Institute of Plant Protection (Research Center of Quality Safety and Standards for Agricultural Products of Hainan Academy of Agricultural Sciences), Hainan Academy of Agricultural Sciences, Haikou 571100, China; (S.T.); (B.W.); (W.Y.)
- Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests Ministry of Education, Hainan University, Haikou 571100, China
| | - Qian Yun
- Key Laboratory of Plant Disease and Pest Control of Hainan Province, Institute of Plant Protection (Research Center of Quality Safety and Standards for Agricultural Products of Hainan Academy of Agricultural Sciences), Hainan Academy of Agricultural Sciences, Haikou 571100, China; (S.T.); (B.W.); (W.Y.)
| | - Wanrong Yan
- Key Laboratory of Plant Disease and Pest Control of Hainan Province, Institute of Plant Protection (Research Center of Quality Safety and Standards for Agricultural Products of Hainan Academy of Agricultural Sciences), Hainan Academy of Agricultural Sciences, Haikou 571100, China; (S.T.); (B.W.); (W.Y.)
| | - Tongbin Xiao
- Key Laboratory of Plant Disease and Pest Control of Hainan Province, Institute of Plant Protection (Research Center of Quality Safety and Standards for Agricultural Products of Hainan Academy of Agricultural Sciences), Hainan Academy of Agricultural Sciences, Haikou 571100, China; (S.T.); (B.W.); (W.Y.)
| | - Zhixiang Zhao
- Key Laboratory of Plant Disease and Pest Control of Hainan Province, Institute of Plant Protection (Research Center of Quality Safety and Standards for Agricultural Products of Hainan Academy of Agricultural Sciences), Hainan Academy of Agricultural Sciences, Haikou 571100, China; (S.T.); (B.W.); (W.Y.)
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Khalil S, Panda P, Ghadamgahi F, Barreiro A, Rosberg AK, Karlsson M, Vetukuri RR. Microbial potential of spent mushroom compost and oyster substrate in horticulture: Diversity, function, and sustainable plant growth solutions. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 357:120654. [PMID: 38552523 DOI: 10.1016/j.jenvman.2024.120654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Revised: 03/03/2024] [Accepted: 03/10/2024] [Indexed: 04/14/2024]
Affiliation(s)
- Samar Khalil
- Swedish University of Agricultural Sciences, Department of Biosystems and Technology, Box 103, 230 53, Alnarp, Sweden.
| | - Preeti Panda
- The New Zealand Institute for Plant & Food Research Limited, Canterbury Agriculture & Science Centre, 74 Gerald St, Lincoln, 7608, New Zealand
| | - Farideh Ghadamgahi
- Swedish University of Agricultural Sciences, Department of Plant Breeding, Box 102, 230 53, Alnarp, Sweden
| | - Ana Barreiro
- Department of Soil Science and Agricultural Chemistry, Engineering Polytechnic School, University of Santiago de Compostela, Lugo, Spain
| | - Anna Karin Rosberg
- Swedish University of Agricultural Sciences, Department of Biosystems and Technology, Box 103, 230 53, Alnarp, Sweden
| | - Maria Karlsson
- Swedish University of Agricultural Sciences, Department of Biosystems and Technology, Box 103, 230 53, Alnarp, Sweden
| | - Ramesh R Vetukuri
- Swedish University of Agricultural Sciences, Department of Plant Breeding, Box 102, 230 53, Alnarp, Sweden
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Zhang X, Peng J, Hao X, Feng G, Shen Y, Wang G, Chen Z. Serratia marcescens LYGN1 Reforms the Rhizosphere Microbial Community and Promotes Cucumber and Pepper Growth in Plug Seedling Cultivation. PLANTS (BASEL, SWITZERLAND) 2024; 13:592. [PMID: 38475438 DOI: 10.3390/plants13050592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 02/13/2024] [Accepted: 02/19/2024] [Indexed: 03/14/2024]
Abstract
The vegetable plug seedling plays an important role in improving vegetable production. The process of plug seedling contributes to high-quality vegetable seedlings. The substrate composition and chemical fertilizer are widely studied to promote seedling growth. However, little is known about the effect of beneficial bacteria in the rhizosphere microbial community and vegetables' growth during plug seedling. The use of beneficial microbes to promote vegetable seedling growth is of great potential. In this study, we showed that the Serratia marcescens strain LYGN1 enhanced the growth of cucumber and pepper seedlings in plug seedling cultivation. The treatment with LYGN1 significantly increased the biomass and the growth-related index of cucumber and pepper, improving the seedling quality index. Specifically, LYGN1 also improved the cucumber and pepper root system architecture and increased the root diameter. We applied high-throughput sequencing to analyze the microbial community of the seedlings' rhizosphere, which showed LYGN1 to significantly change the composition and structure of the cucumber and pepper rhizosphere microbial communities. The correlation analysis showed that the Abditibacteriota and Bdellovibrionota had positive effects on seedling growth. The findings of this study provide evidence for the effects of Serratia marcescens LYGN1 on the cucumber and pepper rhizosphere microbial communities, which also promoted seedling quality in plug seedling cultivation.
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Affiliation(s)
- Xu Zhang
- College of Life Science, Linyi University, Linyi 276000, China
| | - Jinxin Peng
- College of Life Science, Linyi University, Linyi 276000, China
| | - Xiaodong Hao
- College of Life Science, Linyi University, Linyi 276000, China
| | - Guifang Feng
- College of Life Science, Linyi University, Linyi 276000, China
| | - Yanhui Shen
- Shandong (Linyi) Institute of Modern Agriculture, Zhejiang University, Linyi 276000, China
| | - Guanghui Wang
- Shandong (Linyi) Institute of Modern Agriculture, Zhejiang University, Linyi 276000, China
| | - Zhiqun Chen
- College of Life Science, Linyi University, Linyi 276000, China
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