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For: Masoli S, Rizza MF, Sgritta M, Van Geit W, Schürmann F, D'Angelo E. Single Neuron Optimization as a Basis for Accurate Biophysical Modeling: The Case of Cerebellar Granule Cells. Front Cell Neurosci 2017;11:71. [PMID: 28360841 PMCID: PMC5350144 DOI: 10.3389/fncel.2017.00071] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2016] [Accepted: 02/27/2017] [Indexed: 01/30/2023]  Open
Number Cited by Other Article(s)
1
Reva M, Rössert C, Arnaudon A, Damart T, Mandge D, Tuncel A, Ramaswamy S, Markram H, Van Geit W. A universal workflow for creation, validation, and generalization of detailed neuronal models. PATTERNS (NEW YORK, N.Y.) 2023;4:100855. [PMID: 38035193 PMCID: PMC10682753 DOI: 10.1016/j.patter.2023.100855] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Revised: 03/24/2023] [Accepted: 09/12/2023] [Indexed: 12/02/2023]
2
D'Angelo E, Jirsa V. The quest for multiscale brain modeling. Trends Neurosci 2022;45:777-790. [PMID: 35906100 DOI: 10.1016/j.tins.2022.06.007] [Citation(s) in RCA: 39] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 05/20/2022] [Accepted: 06/21/2022] [Indexed: 01/07/2023]
3
Ladd A, Kim KG, Balewski J, Bouchard K, Ben-Shalom R. Scaling and Benchmarking an Evolutionary Algorithm for Constructing Biophysical Neuronal Models. Front Neuroinform 2022;16:882552. [PMID: 35784184 PMCID: PMC9248031 DOI: 10.3389/fninf.2022.882552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Accepted: 05/18/2022] [Indexed: 11/28/2022]  Open
4
Naudin L, Jiménez Laredo JL, Liu Q, Corson N. Systematic generation of biophysically detailed models with generalization capability for non-spiking neurons. PLoS One 2022;17:e0268380. [PMID: 35560186 PMCID: PMC9106219 DOI: 10.1371/journal.pone.0268380] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Accepted: 04/28/2022] [Indexed: 11/18/2022]  Open
5
Marín M, Cruz NC, Ortigosa EM, Sáez-Lara MJ, Garrido JA, Carrillo RR. On the Use of a Multimodal Optimizer for Fitting Neuron Models. Application to the Cerebellar Granule Cell. Front Neuroinform 2021;15:663797. [PMID: 34149387 PMCID: PMC8209370 DOI: 10.3389/fninf.2021.663797] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Accepted: 04/13/2021] [Indexed: 11/19/2022]  Open
6
Rizza MF, Locatelli F, Masoli S, Sánchez-Ponce D, Muñoz A, Prestori F, D'Angelo E. Stellate cell computational modeling predicts signal filtering in the molecular layer circuit of cerebellum. Sci Rep 2021;11:3873. [PMID: 33594118 PMCID: PMC7886897 DOI: 10.1038/s41598-021-83209-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Accepted: 12/17/2020] [Indexed: 12/22/2022]  Open
7
Masoli S, Ottaviani A, Casali S, D’Angelo E. Cerebellar Golgi cell models predict dendritic processing and mechanisms of synaptic plasticity. PLoS Comput Biol 2020;16:e1007937. [PMID: 33378395 PMCID: PMC7837495 DOI: 10.1371/journal.pcbi.1007937] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Revised: 01/26/2021] [Accepted: 11/13/2020] [Indexed: 02/06/2023]  Open
8
Cellular-resolution mapping uncovers spatial adaptive filtering at the rat cerebellum input stage. Commun Biol 2020;3:635. [PMID: 33128000 PMCID: PMC7599228 DOI: 10.1038/s42003-020-01360-y] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Accepted: 10/08/2020] [Indexed: 01/08/2023]  Open
9
Marín M, Sáez-Lara MJ, Ros E, Garrido JA. Optimization of Efficient Neuron Models With Realistic Firing Dynamics. The Case of the Cerebellar Granule Cell. Front Cell Neurosci 2020;14:161. [PMID: 32765220 PMCID: PMC7381211 DOI: 10.3389/fncel.2020.00161] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Accepted: 05/13/2020] [Indexed: 11/17/2022]  Open
10
Valadez-Godínez S, Sossa H, Santiago-Montero R. On the accuracy and computational cost of spiking neuron implementation. Neural Netw 2019;122:196-217. [PMID: 31689679 DOI: 10.1016/j.neunet.2019.09.026] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2019] [Revised: 09/12/2019] [Accepted: 09/17/2019] [Indexed: 10/25/2022]
11
Rumbell T, Kozloski J. Dimensions of control for subthreshold oscillations and spontaneous firing in dopamine neurons. PLoS Comput Biol 2019;15:e1007375. [PMID: 31545787 PMCID: PMC6776370 DOI: 10.1371/journal.pcbi.1007375] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Revised: 10/03/2019] [Accepted: 09/04/2019] [Indexed: 11/20/2022]  Open
12
Geminiani A, Casellato C, D'Angelo E, Pedrocchi A. Complex Electroresponsive Dynamics in Olivocerebellar Neurons Represented With Extended-Generalized Leaky Integrate and Fire Models. Front Comput Neurosci 2019;13:35. [PMID: 31244635 PMCID: PMC6563830 DOI: 10.3389/fncom.2019.00035] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Accepted: 05/20/2019] [Indexed: 11/24/2022]  Open
13
Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons. PLoS Comput Biol 2019;15:e1006753. [PMID: 31095552 PMCID: PMC6541309 DOI: 10.1371/journal.pcbi.1006753] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2018] [Revised: 05/29/2019] [Accepted: 04/10/2019] [Indexed: 01/12/2023]  Open
14
Casali S, Marenzi E, Medini C, Casellato C, D'Angelo E. Reconstruction and Simulation of a Scaffold Model of the Cerebellar Network. Front Neuroinform 2019;13:37. [PMID: 31156416 PMCID: PMC6530631 DOI: 10.3389/fninf.2019.00037] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Accepted: 04/29/2019] [Indexed: 02/05/2023]  Open
15
Carrillo RR, Naveros F, Ros E, Luque NR. A Metric for Evaluating Neural Input Representation in Supervised Learning Networks. Front Neurosci 2019;12:913. [PMID: 30618549 PMCID: PMC6302114 DOI: 10.3389/fnins.2018.00913] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2017] [Accepted: 11/20/2018] [Indexed: 11/13/2022]  Open
16
Sarma GP, Lee CW, Portegys T, Ghayoomie V, Jacobs T, Alicea B, Cantarelli M, Currie M, Gerkin RC, Gingell S, Gleeson P, Gordon R, Hasani RM, Idili G, Khayrulin S, Lung D, Palyanov A, Watts M, Larson SD. OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans. Philos Trans R Soc Lond B Biol Sci 2018;373:rstb.2017.0382. [PMID: 30201845 PMCID: PMC6158220 DOI: 10.1098/rstb.2017.0382] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/16/2018] [Indexed: 01/02/2023]  Open
17
D'Angelo E. Physiology of the cerebellum. HANDBOOK OF CLINICAL NEUROLOGY 2018;154:85-108. [PMID: 29903454 DOI: 10.1016/b978-0-444-63956-1.00006-0] [Citation(s) in RCA: 90] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
18
Masoli S, D'Angelo E. Synaptic Activation of a Detailed Purkinje Cell Model Predicts Voltage-Dependent Control of Burst-Pause Responses in Active Dendrites. Front Cell Neurosci 2017;11:278. [PMID: 28955206 PMCID: PMC5602117 DOI: 10.3389/fncel.2017.00278] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2017] [Accepted: 08/29/2017] [Indexed: 01/24/2023]  Open
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