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Tixier F, Rodriguez D, Jones J, Martin L, Yassall A, Selvaraj B, Islam M, Ostendorf A, Hester M, Ho ML. Radiomic detection of abnormal brain regions in tuberous sclerosis complex. Med Phys 2024. [PMID: 39312593 DOI: 10.1002/mp.17400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 06/18/2024] [Accepted: 08/22/2024] [Indexed: 09/25/2024] Open
Abstract
BACKGROUND Radiomics refers to the extraction of quantitative information from medical images and is most commonly utilized in oncology to provide ancillary information for solid tumor diagnosis, prognosis, and treatment response. The traditional radiomic pipeline involves segmentation of volumes of interest with comparison to normal brain. In other neurologic disorders, such as epilepsy, lesion delineation may be difficult or impossible due to poor anatomic definition, small size, and multifocal or diffuse distribution. Tuberous sclerosis complex (TSC) is a rare genetic disease in which brain magnetic resonance imaging (MRI) demonstrates multifocal abnormalities with variable imaging and epileptogenic features. PURPOSE The purpose of this study was to develop a radiomic workflow for identification of abnormal brain regions in TSC, using a whole-brain atlas-based approach with generation of heatmaps based on signal deviation from normal controls. METHODS This was a retrospective pilot study utilizing high-resolution whole-brain 3D FLAIR MRI datasets from retrospective enrollment of tuberous sclerosis complex (TSC) patients and normal controls. Subjects underwent MRI including high-resolution 3D FLAIR sequences. Preprocessing included skull stripping, coregistration, and intensity normalization. Using the Brainnetome and Harvard-Oxford atlases, brain regions were parcellated into 318 discrete regions. Expert neuroradiologists spatially labeled all tubers in TSC patients using ITK-SNAP. The pyradiomics toolbox was used to extract 88 radiomic features based on IBSI guidelines, comparing tuber-affected and non-tuber-affected parenchyma in TSC patients, as well as normal brain tissue in control patients. For model training and validation, regions with tubers from 20 TSC patients and 30 normal control subjects were randomly divided into two training sets (80%) and two validation sets (20%). Additional model testing was performed on a separate group of 20 healthy controls. LASSO (least absolute shrinkage and selection operator) was used to perform variable selection and regularization to identify regions containing tubers. Relevant radiomic features selected by LASSO were combined to produce a radiomic score ω, defined as the sum of squared differences from average control group values. Region-specific ω scores were converted to heat maps and spatially coregistered with brain MRI to reflect overall radiomic deviation from normal. RESULTS The proposed radiomic workflow allows for quantification of deviation from normal in 318 regions of the brain with the use of a summative radiomic score ω. This score can be used to generate spatially registered heatmaps to identify brain regions with radiomic abnormalities. The pilot study of TSC showed radiomic scores ω that were statistically different in regions containing tubers from regions without tubers/normal brain (p < 0.0001). Our model exhibits an AUC of 0.81 (95% confidence interval: 0.78-0.84) on the testing set, and the best threshold obtained on the training set, when applied to the testing set, allows us to identify regions with tubers with a specificity of 0.91 and a sensitivity of 0.60. CONCLUSION We describe a whole-brain atlas-based radiomic approach to identify abnormal brain regions in TSC patients. This approach may be helpful for identifying specific regions of interest based on relatively greater signal deviation, particularly in clinical scenarios with numerous or poorly defined anatomic lesions.
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Affiliation(s)
- Florent Tixier
- Department of Radiology, Nationwide Children's Hospital, Columbus, Ohio, USA
| | - Diana Rodriguez
- Department of Radiology, Nationwide Children's Hospital, Columbus, Ohio, USA
| | - Jeremy Jones
- Department of Radiology, Nationwide Children's Hospital, Columbus, Ohio, USA
| | - Lisa Martin
- Department of Radiology, Nationwide Children's Hospital, Columbus, Ohio, USA
| | - Anthony Yassall
- Department of Radiology, Nationwide Children's Hospital, Columbus, Ohio, USA
| | - Bhavani Selvaraj
- Department of Radiology, Nationwide Children's Hospital, Columbus, Ohio, USA
| | - Monica Islam
- Department of Neurology, Nationwide Children's Hospital, Columbus, Ohio, USA
- Department of Pediatrics, The Ohio State University College of Medicine, Columbus, Ohio, USA
| | - Adam Ostendorf
- Department of Neurology, Nationwide Children's Hospital, Columbus, Ohio, USA
- Department of Pediatrics, The Ohio State University College of Medicine, Columbus, Ohio, USA
| | - Mark Hester
- The Steve and Cindy Rasmussen Institute for Genomic Medicine, Columbus, Ohio, USA
- Department of Neuroscience, College of Medicine, Ohio State University, Columbus, Ohio, USA
| | - Mai-Lan Ho
- Department of Radiology, University of Missouri, Columbia, Missouri, USA
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Gu YW, Fan JW, Zhao SW, Liu XF, Yin H, Cui LB. Large-scale mechanism hypothesis and research prospects of cognitive impairment in schizophrenia based on magnetic resonance imaging. Heliyon 2024; 10:e25915. [PMID: 38404811 PMCID: PMC10884805 DOI: 10.1016/j.heliyon.2024.e25915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 01/09/2024] [Accepted: 02/05/2024] [Indexed: 02/27/2024] Open
Abstract
Cognitive impairments in schizophrenia are pivotal clinical issues that need to be solved urgently. However, the mechanism remains unknown. It has been suggested that cognitive impairments in schizophrenia are associated with connectome damage, and are especially relevant to the disrupted hub nodes in the frontal and parietal lobes. Activating the dorsolateral prefrontal cortex (DLPFC) via repetitive transcranial magnetic stimulation (rTMS) could result in improved cognition. Based on several previous magnetic resonance imaging (MRI) studies on schizophrenia, we found that the first-episode patients showed connectome damage, as well as abnormal activation and connectivity of the DLPFC and inferior parietal lobule (IPL). Accordingly, we proposed that DLPFC-IPL pathway destruction might mediate connectome damage of cognitive impairments in schizophrenia. In the meantime, with the help of multimodal MRI and noninvasive neuromodulation tool, we may not only validate the hypothesis, but also find IPL as the potential intervention target for cognitive impairments in schizophrenia.
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Affiliation(s)
- Yue-Wen Gu
- Shaanxi Provincial Key Laboratory of Clinic Genetics, Fourth Military Medical University, Xi’an, China
- Schizophrenia Imaging Lab, Xijing Hospital, Fourth Military Medical University, Xi’an, China
- Department of Radiology, The General Hospital of Western Theater Command, Chengdu, China
| | - Jing-Wen Fan
- Shaanxi Provincial Key Laboratory of Clinic Genetics, Fourth Military Medical University, Xi’an, China
- Schizophrenia Imaging Lab, Xijing Hospital, Fourth Military Medical University, Xi’an, China
| | - Shu-Wan Zhao
- Shaanxi Provincial Key Laboratory of Clinic Genetics, Fourth Military Medical University, Xi’an, China
- Schizophrenia Imaging Lab, Xijing Hospital, Fourth Military Medical University, Xi’an, China
| | - Xiao-Fan Liu
- Shaanxi Provincial Key Laboratory of Clinic Genetics, Fourth Military Medical University, Xi’an, China
- Schizophrenia Imaging Lab, Xijing Hospital, Fourth Military Medical University, Xi’an, China
| | - Hong Yin
- Schizophrenia Imaging Lab, Xijing Hospital, Fourth Military Medical University, Xi’an, China
- Department of Radiology, Xi'an People's Hospital (Xi'an Fourth Hospital), Xi'an, China
| | - Long-Biao Cui
- Shaanxi Provincial Key Laboratory of Clinic Genetics, Fourth Military Medical University, Xi’an, China
- Schizophrenia Imaging Lab, Xijing Hospital, Fourth Military Medical University, Xi’an, China
- Department of Radiology, The First Affiliated Hospital of Xi’an Jiaotong University, Xi’an, China
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Chaddad A, Li J, Lu Q, Li Y, Okuwobi IP, Tanougast C, Desrosiers C, Niazi T. Can Autism Be Diagnosed with Artificial Intelligence? A Narrative Review. Diagnostics (Basel) 2021; 11:2032. [PMID: 34829379 PMCID: PMC8618159 DOI: 10.3390/diagnostics11112032] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Revised: 10/31/2021] [Accepted: 10/31/2021] [Indexed: 11/16/2022] Open
Abstract
Radiomics with deep learning models have become popular in computer-aided diagnosis and have outperformed human experts on many clinical tasks. Specifically, radiomic models based on artificial intelligence (AI) are using medical data (i.e., images, molecular data, clinical variables, etc.) for predicting clinical tasks such as autism spectrum disorder (ASD). In this review, we summarized and discussed the radiomic techniques used for ASD analysis. Currently, the limited radiomic work of ASD is related to the variation of morphological features of brain thickness that is different from texture analysis. These techniques are based on imaging shape features that can be used with predictive models for predicting ASD. This review explores the progress of ASD-based radiomics with a brief description of ASD and the current non-invasive technique used to classify between ASD and healthy control (HC) subjects. With AI, new radiomic models using the deep learning techniques will be also described. To consider the texture analysis with deep CNNs, more investigations are suggested to be integrated with additional validation steps on various MRI sites.
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Affiliation(s)
- Ahmad Chaddad
- School of Artificial Intelligence, Guilin Universiy of Electronic Technology, Guilin 541004, China; (J.L.); (Q.L.); (Y.L.); (I.P.O.)
- The Laboratory for Imagery, Vision and Artificial Intelligence, École de Technologie Supérieure (ETS), Montreal, QC H3C 1K3, Canada;
| | - Jiali Li
- School of Artificial Intelligence, Guilin Universiy of Electronic Technology, Guilin 541004, China; (J.L.); (Q.L.); (Y.L.); (I.P.O.)
| | - Qizong Lu
- School of Artificial Intelligence, Guilin Universiy of Electronic Technology, Guilin 541004, China; (J.L.); (Q.L.); (Y.L.); (I.P.O.)
| | - Yujie Li
- School of Artificial Intelligence, Guilin Universiy of Electronic Technology, Guilin 541004, China; (J.L.); (Q.L.); (Y.L.); (I.P.O.)
| | - Idowu Paul Okuwobi
- School of Artificial Intelligence, Guilin Universiy of Electronic Technology, Guilin 541004, China; (J.L.); (Q.L.); (Y.L.); (I.P.O.)
| | - Camel Tanougast
- Laboratoire de Conception, Optimisation et Modélisation des Systèmes, University of Lorraine, 57070 Metz, France;
| | - Christian Desrosiers
- The Laboratory for Imagery, Vision and Artificial Intelligence, École de Technologie Supérieure (ETS), Montreal, QC H3C 1K3, Canada;
| | - Tamim Niazi
- Lady Davis Institute for Medical Research, McGill University, Montreal, QC H3T 1E2, Canada;
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Cui LB, Zhang YJ, Lu HL, Liu L, Zhang HJ, Fu YF, Wu XS, Xu YQ, Li XS, Qiao YT, Qin W, Yin H, Cao F. Thalamus Radiomics-Based Disease Identification and Prediction of Early Treatment Response for Schizophrenia. Front Neurosci 2021; 15:682777. [PMID: 34290581 PMCID: PMC8289251 DOI: 10.3389/fnins.2021.682777] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Accepted: 05/31/2021] [Indexed: 12/15/2022] Open
Abstract
Background Emerging evidence suggests structural and functional disruptions of the thalamus in schizophrenia, but whether thalamus abnormalities are able to be used for disease identification and prediction of early treatment response in schizophrenia remains to be determined. This study aims at developing and validating a method of disease identification and prediction of treatment response by multi-dimensional thalamic features derived from magnetic resonance imaging in schizophrenia patients using radiomics approaches. Methods A total of 390 subjects, including patients with schizophrenia and healthy controls, participated in this study, among which 109 out of 191 patients had clinical characteristics of early outcome (61 responders and 48 non-responders). Thalamus-based radiomics features were extracted and selected. The diagnostic and predictive capacity of multi-dimensional thalamic features was evaluated using radiomics approach. Results Using radiomics features, the classifier accurately discriminated patients from healthy controls, with an accuracy of 68%. The features were further confirmed in prediction and random forest of treatment response, with an accuracy of 75%. Conclusion Our study demonstrates a radiomics approach by multiple thalamic features to identify schizophrenia and predict early treatment response. Thalamus-based classification could be promising to apply in schizophrenia definition and treatment selection.
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Affiliation(s)
- Long-Biao Cui
- The Second Medical Center, Chinese PLA General Hospital, Beijing, China.,Department of Clinical Psychology, Fourth Military Medical University, Xi'an, China
| | - Ya-Juan Zhang
- Military Medical Psychology School, Fourth Military Medical University, Xi'an, China
| | - Hong-Liang Lu
- Military Medical Psychology School, Fourth Military Medical University, Xi'an, China
| | - Lin Liu
- School of Life Sciences and Technology, Xidian University, Xi'an, China.,Peking University Sixth Hospital/Institute of Mental Health and Key Laboratory of Mental Health, Peking University, Beijing, China
| | - Hai-Jun Zhang
- Department of Clinical Aerospace Medicine, School of Aerospace Medicine, Fourth Military Medical University, Xi'an, China
| | - Yu-Fei Fu
- Department of Radiology, Xijing Hospital, Fourth Military Medical University, Xi'an, China
| | - Xu-Sha Wu
- Department of Radiology, Xijing Hospital, Fourth Military Medical University, Xi'an, China
| | - Yong-Qiang Xu
- Department of Radiology, Xijing Hospital, Fourth Military Medical University, Xi'an, China
| | - Xiao-Sa Li
- Department of Psychiatry, Xijing Hospital, Fourth Military Medical University, Xi'an, China
| | - Yu-Ting Qiao
- Department of Psychiatry, Xijing Hospital, Fourth Military Medical University, Xi'an, China
| | - Wei Qin
- School of Life Sciences and Technology, Xidian University, Xi'an, China
| | - Hong Yin
- Department of Radiology, Xijing Hospital, Fourth Military Medical University, Xi'an, China
| | - Feng Cao
- The Second Medical Center, Chinese PLA General Hospital, Beijing, China
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