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Serra D, Franco P, Romero P, Romitti G, Garcia-Fernandez I, Lozano M, Liberos A, Penela D, Berruezo A, Camara O, Rodrigo M, Sebastian R. Assessment of Risk for Ventricular Tachycardia based on Extensive Electrophysiology Simulations. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023; 2023:1-4. [PMID: 38083190 DOI: 10.1109/embc40787.2023.10340169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Patients that have suffered a myocardial infarction are at high risk of developing ventricular tachycardia. Patient stratification is often determined by characterization of the underlying myocardial substrate by cardiac imaging methods. In this study, we show that computer modeling of cardiac electrophysiology based on personalized fast 3D simulations can help to assess patient risk to arrhythmia. We perform a large simulation study on 21 patient digital twins and reproduce successfully the clinical outcomes. In addition, we provide the sites which are prone to sustain ventricular tachycardias, i.e, onset sites around the scar region, and validate if they colocalize with exit sites from slow conduction channels.Clinical relevance- Fast electrophysiological simulations can provide advanced patient stratification indices and predict arrhythmic susceptibility to suffer from ventricular tachycardia in patients that have suffered a myocardial infarction.
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Hernández-Romero I, Molero R, Fambuena-Santos C, Herrero-Martín C, Climent AM, Guillem MS. Electrocardiographic imaging in the atria. Med Biol Eng Comput 2023; 61:879-896. [PMID: 36370321 PMCID: PMC9988819 DOI: 10.1007/s11517-022-02709-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 10/26/2022] [Indexed: 11/13/2022]
Abstract
The inverse problem of electrocardiography or electrocardiographic imaging (ECGI) is a technique for reconstructing electrical information about cardiac surfaces from noninvasive or non-contact recordings. ECGI has been used to characterize atrial and ventricular arrhythmias. Although it is a technology with years of progress, its development to characterize atrial arrhythmias is challenging. Complications can arise when trying to describe the atrial mechanisms that lead to abnormal propagation patterns, premature or tachycardic beats, and reentrant arrhythmias. This review addresses the various ECGI methodologies, regularization methods, and post-processing techniques used in the atria, as well as the context in which they are used. The current advantages and limitations of ECGI in the fields of research and clinical diagnosis of atrial arrhythmias are outlined. In addition, areas where ECGI efforts should be concentrated to address the associated unsatisfied needs from the atrial perspective are discussed.
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Affiliation(s)
| | - Rubén Molero
- ITACA, Universitat Politècnica de València, Valencia, Spain
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Bai J, Lu Y, Wang H, Zhao J. How synergy between mechanistic and statistical models is impacting research in atrial fibrillation. Front Physiol 2022; 13:957604. [PMID: 36111152 PMCID: PMC9468674 DOI: 10.3389/fphys.2022.957604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 08/08/2022] [Indexed: 11/13/2022] Open
Abstract
Atrial fibrillation (AF) with multiple complications, high morbidity and mortality, and low cure rates, has become a global public health problem. Although significant progress has been made in the treatment methods represented by anti-AF drugs and radiofrequency ablation, the therapeutic effect is not as good as expected. The reason is mainly because of our lack of understanding of AF mechanisms. This field has benefited from mechanistic and (or) statistical methodologies. Recent renewed interest in digital twin techniques by synergizing between mechanistic and statistical models has opened new frontiers in AF analysis. In the review, we briefly present findings that gave rise to the AF pathophysiology and current therapeutic modalities. We then summarize the achievements of digital twin technologies in three aspects: understanding AF mechanisms, screening anti-AF drugs and optimizing ablation strategies. Finally, we discuss the challenges that hinder the clinical application of the digital twin heart. With the rapid progress in data reuse and sharing, we expect their application to realize the transition from AF description to response prediction.
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Affiliation(s)
- Jieyun Bai
- Guangdong Provincial Key Laboratory of Traditional Chinese Medicine Information Technology, Jinan University, Guangzhou, China
- College of Information Science and Technology, Jinan University, Guangzhou, China
- *Correspondence: Jieyun Bai, ; Jichao Zhao,
| | - Yaosheng Lu
- Guangdong Provincial Key Laboratory of Traditional Chinese Medicine Information Technology, Jinan University, Guangzhou, China
- College of Information Science and Technology, Jinan University, Guangzhou, China
| | - Huijin Wang
- College of Information Science and Technology, Jinan University, Guangzhou, China
| | - Jichao Zhao
- Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
- *Correspondence: Jieyun Bai, ; Jichao Zhao,
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An Automata-Based Cardiac Electrophysiology Simulator to Assess Arrhythmia Inducibility. MATHEMATICS 2022. [DOI: 10.3390/math10081293] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Personalized cardiac electrophysiology simulations have demonstrated great potential to study cardiac arrhythmias and help in therapy planning of radio-frequency ablation. Its application to analyze vulnerability to ventricular tachycardia and sudden cardiac death in infarcted patients has been recently explored. However, the detailed multi-scale biophysical simulations used in these studies are very demanding in terms of memory and computational resources, which prevents their clinical translation. In this work, we present a fast phenomenological system based on cellular automata (CA) to simulate personalized cardiac electrophysiology. The system is trained on biophysical simulations to reproduce cellular and tissue dynamics in healthy and pathological conditions, including action potential restitution, conduction velocity restitution and cell safety factor. We show that a full ventricular simulation can be performed in the order of seconds, emulate the results of a biophysical simulation and reproduce a patient’s ventricular tachycardia in a model that includes a heterogeneous scar region. The system could be used to study the risk of arrhythmia in infarcted patients for a large number of scenarios.
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Mohammadi F, Sheikhani A, Razzazi F, Ghorbani Sharif A. Non-invasive localization of the ectopic foci of focal atrial tachycardia by using ECG signal based sparse decomposition algorithm. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.103014] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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Karoui A, Bendahmane M, Zemzemi N. Cardiac Activation Maps Reconstruction: A Comparative Study Between Data-Driven and Physics-Based Methods. Front Physiol 2021; 12:686136. [PMID: 34512373 PMCID: PMC8428526 DOI: 10.3389/fphys.2021.686136] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2021] [Accepted: 07/19/2021] [Indexed: 01/29/2023] Open
Abstract
One of the essential diagnostic tools of cardiac arrhythmia is activation mapping. Noninvasive current mapping procedures include electrocardiographic imaging. It allows reconstructing heart surface potentials from measured body surface potentials. Then, activation maps are generated using the heart surface potentials. Recently, a study suggests to deploy artificial neural networks to estimate activation maps directly from body surface potential measurements. Here we carry out a comparative study between the data-driven approach DirectMap and noninvasive classic technique based on reconstructed heart surface potentials using both Finite element method combined with L1-norm regularization (FEM-L1) and the spatial adaptation of Time-delay neural networks (SATDNN-AT). In this work, we assess the performance of the three approaches using a synthetic single paced-rhythm dataset generated on the atria surface. The results show that data-driven approach DirectMap quantitatively outperforms the two other methods. In fact, we observe an absolute activation time error and a correlation coefficient, respectively, equal to 7.20 ms, 93.2% using DirectMap, 14.60 ms, 76.2% using FEM-L1 and 13.58 ms, 79.6% using SATDNN-AT. In addition, results show that data-driven approaches (DirectMap and SATDNN-AT) are strongly robust against additive gaussian noise compared to FEM-L1.
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Affiliation(s)
- Amel Karoui
- Institute of Mathematics, University of Bordeaux, Bordeaux, France
- INRIA Bordeaux Sud-Ouest, Bordeaux, France
- IHU-Liryc, Bordeaux, France
| | - Mostafa Bendahmane
- Institute of Mathematics, University of Bordeaux, Bordeaux, France
- INRIA Bordeaux Sud-Ouest, Bordeaux, France
| | - Nejib Zemzemi
- Institute of Mathematics, University of Bordeaux, Bordeaux, France
- INRIA Bordeaux Sud-Ouest, Bordeaux, France
- IHU-Liryc, Bordeaux, France
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Bragard JR, Camara O, Echebarria B, Gerardo Giorda L, Pueyo E, Saiz J, Sebastián R, Soudah E, Vázquez M. Cardiac computational modelling. ACTA ACUST UNITED AC 2020; 74:65-71. [PMID: 32807708 DOI: 10.1016/j.rec.2020.05.024] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 05/25/2020] [Indexed: 12/26/2022]
Abstract
Cardiovascular diseases currently have a major social and economic impact, constituting one of the leading causes of mortality and morbidity. Personalized computational models of the heart are demonstrating their usefulness both to help understand the mechanisms underlying cardiac disease, and to optimize their treatment and predict the patient's response. Within this framework, the Spanish Research Network for Cardiac Computational Modelling (VHeart-SN) has been launched. The general objective of the VHeart-SN network is the development of an integrated, modular and multiscale multiphysical computational model of the heart. This general objective is addressed through the following specific objectives: a) to integrate the different numerical methods and models taking into account the specificity of patients; b) to assist in advancing knowledge of the mechanisms associated with cardiac and vascular diseases; and c) to support the application of different personalized therapies. This article presents the current state of cardiac computational modelling and different scientific works conducted by the members of the network to gain greater understanding of the characteristics and usefulness of these models.
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Affiliation(s)
- Jean R Bragard
- Grupo de Biofísica (BIOFIS), Departamento de Física y Matemática Aplicada, Universidad de Navarra, Pamplona, Navarra, Spain
| | - Oscar Camara
- Sensing in Physiology and Biomedicine (PhySense), Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona, Spain
| | - Blas Echebarria
- Grupo de Biología Computacional y Sistemas Complejos (BIOCOM-SC), Universitat Politècnica de Catalunya, Barcelona, Spain
| | | | - Esther Pueyo
- Biomedical Signal Interpretation and Computational Simulation (BSICoS), Universidad de Zaragoza, CIBER-BBN, Zaragoza, Spain
| | - Javier Saiz
- Centro de Investigación e Innovación en Bioingeniería (Ci2B), Universitat Politècnica de València, Valencia, Spain.
| | - Rafael Sebastián
- Computational Multiscale Simulation Lab (CoMMLab), Universitat de València, Burjassot, Valencia, Spain
| | - Eduardo Soudah
- International Centre for Numerical Methods in Engineering (CIMNE), Universitat Politècnica de Catalunya, Barcelona, Spain
| | - Mariano Vázquez
- Barcelona Supercomputing Center & ELEM Biotech, Barcelona, Spain
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Gyawali PK, Horacek BM, Sapp JL, Wang L. Sequential Factorized Autoencoder for Localizing the Origin of Ventricular Activation From 12-Lead Electrocardiograms. IEEE Trans Biomed Eng 2019; 67:1505-1516. [PMID: 31494539 DOI: 10.1109/tbme.2019.2939138] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
OBJECTIVE This work presents a novel approach to handle the inter-subject variations existing in the population analysis of ECG, applied for localizing the origin of ventricular tachycardia (VT) from 12-lead electrocardiograms (ECGs). METHODS The presented method involves a factor disentangling sequential autoencoder (f-SAE) - realized in both long short-term memory (LSTM) and gated recurrent unit (GRU) networks - to learn to disentangle the inter-subject variations from the factor relating to the location of origin of VT. To perform such disentanglement, a pair-wise contrastive loss is introduced. RESULTS The presented methods are evaluated on ECG dataset with 1012 distinct pacing sites collected from scar-related VT patients during routine pace-mapping procedures. Experiments demonstrate that, for classifying the origin of VT into the predefined segments, the presented f-SAE improves the classification accuracy by 8.94% from using prescribed QRS features, by 1.5% from the supervised deep CNN network, and 5.15% from the standard SAE without factor disentanglement. Similarly, when predicting the coordinates of the VT origin, the presented f-SAE improves the performance by 2.25 mm from using prescribed QRS features, by 1.18 mm from the supervised deep CNN network and 1.6 mm from the standard SAE. CONCLUSION These results demonstrate the importance as well as the feasibility of the presented f-SAE approach for separating inter-subject variations when using 12-lead ECG to localize the origin of VT. SIGNIFICANCE This work suggests the important research direction to deal with the well-known challenge posed by inter-subject variations during population analysis from ECG signals.
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Schuler S, Wachter A, Dössel O. Electrocardiographic Imaging Using a Spatio-Temporal Basis of Body Surface Potentials-Application to Atrial Ectopic Activity. Front Physiol 2018; 9:1126. [PMID: 30233385 PMCID: PMC6129676 DOI: 10.3389/fphys.2018.01126] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2018] [Accepted: 07/27/2018] [Indexed: 11/13/2022] Open
Abstract
Electrocardiographic imaging (ECGI) strongly relies on a priori assumptions and additional information to overcome ill-posedness. The major challenge of obtaining good reconstructions consists in finding ways to add information that effectively restricts the solution space without violating properties of the sought solution. In this work, we attempt to address this problem by constructing a spatio-temporal basis of body surface potentials (BSP) from simulations of many focal excitations. Measured BSPs are projected onto this basis and reconstructions are expressed as linear combinations of corresponding transmembrane voltage (TMV) basis vectors. The novel method was applied to simulations of 100 atrial ectopic foci with three different conduction velocities. Three signal-to-noise ratios (SNR) and bases of six different temporal lengths were considered. Reconstruction quality was evaluated using the spatial correlation coefficient of TMVs as well as estimated local activation times (LAT). The focus localization error was assessed by computing the geodesic distance between true and reconstructed foci. Compared with an optimally parameterized Tikhonov-Greensite method, the BSP basis reconstruction increased the mean TMV correlation by up to 22, 24, and 32% for an SNR of 40, 20, and 0 dB, respectively. Mean LAT correlation could be improved by up to 5, 7, and 19% for the three SNRs. For 0 dB, the average localization error could be halved from 15.8 to 7.9 mm. For the largest basis length, the localization error was always below 34 mm. In conclusion, the new method improved reconstructions of atrial ectopic activity especially for low SNRs. Localization of ectopic foci turned out to be more robust and more accurate. Preliminary experiments indicate that the basis generalizes to some extent from the training data and may even be applied for reconstruction of non-ectopic activity.
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Affiliation(s)
- Steffen Schuler
- Institute of Biomedical Engineering, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Andreas Wachter
- Institute of Biomedical Engineering, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Olaf Dössel
- Institute of Biomedical Engineering, Karlsruhe Institute of Technology, Karlsruhe, Germany
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