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Manjunath KK, Krishna H, Devate NB, Sunilkumar VP, Patil SP, Chauhan D, Singh S, Kumar S, Jain N, Singh GP, Singh PK. QTL mapping: insights into genomic regions governing component traits of yield under combined heat and drought stress in wheat. Front Genet 2024; 14:1282240. [PMID: 38269367 PMCID: PMC10805833 DOI: 10.3389/fgene.2023.1282240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Accepted: 12/15/2023] [Indexed: 01/26/2024] Open
Abstract
Drought and heat frequently co-occur during crop growth leading to devastating yield loss. The knowledge of the genetic loci governing component traits of yield under combined drought and heat stress is essential for enhancing the climate resilience. The present study employed a mapping population of 180 recombinant inbred lines (RILs) derived from a cross between GW322 and KAUZ to identify quantitative trait loci (QTLs) governing the component traits of yield under heat and combined stress conditions. Phenotypic evaluation was conducted across two consecutive crop seasons (2021-2022 and 2022-2023) under late sown irrigation (LSIR) and late sown restricted irrigation (LSRI) conditions at the Indian Council of Agricultural Research Institute-Indian Agricultural Research Institute (ICAR-IARI), New Delhi. Various physiological and agronomic traits of importance were measured. Genotyping was carried out with 35K SNP Axiom breeder's genotyping array. The linkage map spanned a length of 6769.45 cM, ranging from 2.28 cM/marker in 1A to 14.21 cM/marker in 5D. A total of 35 QTLs were identified across 14 chromosomes with 6B containing the highest (seven) number of QTLs. Out of 35 QTLs, 16 were major QTLs explaining the phenotypic variance greater than 10%. The study identified eight stable QTLs along with two hotspots on chromosomes 6B and 5B. Five QTLs associated with traits thousand-grain weight (TGW), normalized difference vegetation index (NDVI), and plant height (PH) were successfully validated. Candidate genes encoding antioxidant enzymes, transcription factors, and growth-related proteins were identified in the QTL regions. In silico expression analysis highlighted higher expression of transcripts TraesCS2D02G021000.1, TraesCS2D02G031000, TraesCS6A02G247900, and TraesCS6B02G421700 under stress conditions. These findings contribute to a deeper understanding of the genetic architecture underlying combined heat and drought tolerance in wheat, providing valuable insights for wheat improvement strategies under changing climatic conditions.
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Affiliation(s)
| | - Hari Krishna
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Narayana Bhat Devate
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - V. P. Sunilkumar
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Sahana Police Patil
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Divya Chauhan
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Shweta Singh
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Sudhir Kumar
- Division of Plant Physiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Neelu Jain
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | | | - Pradeep Kumar Singh
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
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Hou HJM, Allakhverdiev SI, Najafpour MM, Govindjee. Current challenges in photosynthesis: from natural to artificial. FRONTIERS IN PLANT SCIENCE 2014; 5:232. [PMID: 24904626 PMCID: PMC4035565 DOI: 10.3389/fpls.2014.00232] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2014] [Accepted: 05/09/2014] [Indexed: 12/01/2023]
Affiliation(s)
- Harvey J. M. Hou
- Department of Physical Sciences, Alabama State UniversityAlabama, AL, USA
| | - Suleyman I. Allakhverdiev
- Institute of Plant Physiology, Russian Academy of SciencesMoscow, Russia
- Institute of Basic Biological Problems, Russian Academy of SciencesMoscow, Russia
| | - Mohammad M. Najafpour
- Department of Chemistry, Center of Climate Change and Global Warming, Institute for Advanced Studies in Basic SciencesZanjan, Iran
| | - Govindjee
- Departments of Biochemistry and Plant Biology, Center of Biophysics and Quantitative Biology, University of Illinois at Urbana-ChampaignUrbana, IL, USA
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