1
|
Cervantes-Pérez SA, Zogli P, Amini S, Thibivilliers S, Tennant S, Hossain MS, Xu H, Meyer I, Nooka A, Ma P, Yao Q, Naldrett MJ, Farmer A, Martin O, Bhattacharya S, Kläver J, Libault M. Single-cell transcriptome atlases of soybean root and mature nodule reveal new regulatory programs that control the nodulation process. PLANT COMMUNICATIONS 2024; 5:100984. [PMID: 38845198 DOI: 10.1016/j.xplc.2024.100984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Revised: 05/21/2024] [Accepted: 06/03/2024] [Indexed: 07/14/2024]
Abstract
The soybean root system is complex. In addition to being composed of various cell types, the soybean root system includes the primary root, the lateral roots, and the nodule, an organ in which mutualistic symbiosis with N-fixing rhizobia occurs. A mature soybean root nodule is characterized by a central infection zone where atmospheric nitrogen is fixed and assimilated by the symbiont, resulting from the close cooperation between the plant cell and the bacteria. To date, the transcriptome of individual cells isolated from developing soybean nodules has been established, but the transcriptomic signatures of cells from the mature soybean nodule have not yet been characterized. Using single-nucleus RNA-seq and Molecular Cartography technologies, we precisely characterized the transcriptomic signature of soybean root and mature nodule cell types and revealed the co-existence of different sub-populations of B. diazoefficiens-infected cells in the mature soybean nodule, including those actively involved in nitrogen fixation and those engaged in senescence. Mining of the single-cell-resolution nodule transcriptome atlas and the associated gene co-expression network confirmed the role of known nodulation-related genes and identified new genes that control the nodulation process. For instance, we functionally characterized the role of GmFWL3, a plasma membrane microdomain-associated protein that controls rhizobial infection. Our study reveals the unique cellular complexity of the mature soybean nodule and helps redefine the concept of cell types when considering the infection zone of the soybean nodule.
Collapse
Affiliation(s)
| | - Prince Zogli
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68503, USA
| | - Sahand Amini
- Division of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO 65211, USA; Interdisciplinary Plant Group of Missouri-Columbia, Columbia, MO 65211, USA
| | - Sandra Thibivilliers
- Division of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO 65211, USA; Interdisciplinary Plant Group of Missouri-Columbia, Columbia, MO 65211, USA
| | - Sutton Tennant
- Division of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO 65211, USA; Interdisciplinary Plant Group of Missouri-Columbia, Columbia, MO 65211, USA
| | - Md Sabbir Hossain
- Division of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO 65211, USA; Interdisciplinary Plant Group of Missouri-Columbia, Columbia, MO 65211, USA
| | - Hengping Xu
- Division of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO 65211, USA; Interdisciplinary Plant Group of Missouri-Columbia, Columbia, MO 65211, USA
| | - Ian Meyer
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68503, USA
| | - Akash Nooka
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE 68503, USA
| | - Pengchong Ma
- School of Computing, University of Nebraska-Lincoln, Lincoln, NE 68503, USA
| | - Qiuming Yao
- School of Computing, University of Nebraska-Lincoln, Lincoln, NE 68503, USA
| | - Michael J Naldrett
- Proteomics and Metabolomics Facility, Center for Biotechnology, University of Nebraska-Lincoln, Lincoln, NE 68588, USA
| | - Andrew Farmer
- National Center for Genome Resources, Santa Fe, NM 87505, USA
| | - Olivier Martin
- INRAE, Université Paris-Saclay, Institut des Sciences des Plantes de Paris Saclay, IPS2, Batiment 630 Plateau du Moulon, Rue Noetzlin, 91192 Gif sur Yvette Cedex, France
| | | | | | - Marc Libault
- Division of Plant Science and Technology, College of Agriculture, Food, and Natural Resources, University of Missouri-Columbia, Columbia, MO 65211, USA; Interdisciplinary Plant Group of Missouri-Columbia, Columbia, MO 65211, USA.
| |
Collapse
|
2
|
Oxidative Status of Medicago truncatula Seedlings after Inoculation with Rhizobacteria of the Genus Pseudomonas, Paenibacillus and Sinorhizobium. Int J Mol Sci 2023; 24:ijms24054781. [PMID: 36902209 PMCID: PMC10003724 DOI: 10.3390/ijms24054781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 02/21/2023] [Accepted: 02/28/2023] [Indexed: 03/06/2023] Open
Abstract
An increasing number of scientists working to raise agricultural productivity see the potential in the roots and the soil adjacent to them, together with a wealth of micro-organisms. The first mechanisms activated in the plant during any abiotic or biotic stress concern changes in the oxidative status of the plant. With this in mind, for the first time, an attempt was made to check whether the inoculation of seedlings of the model plant Medicago truncatula with rhizobacteria belonging to the genus Pseudomonas (P. brassicacearum KK5, P. corrugata KK7), Paenibacillus borealis KK4 and a symbiotic strain Sinorhizobium meliloti KK13 would change the oxidative status in the days following inoculation. Initially, an increase in H2O2 synthesis was observed, which led to an increase in the activity of antioxidant enzymes responsible for regulating hydrogen peroxide levels. The main enzyme involved in the reduction of H2O2 content in the roots was catalase. The observed changes indicate the possibility of using the applied rhizobacteria to induce processes related to plant resistance and thus to ensure protection against environmental stress factors. In the next stages, it seems reasonable to check whether the initial changes in the oxidative state affect the activation of other pathways related to plant immunity.
Collapse
|
3
|
Sharma T, Sharma U, Kumar S. Iridoid glycosides from Picrorhiza genus endemic to the Himalayan region: phytochemistry, biosynthesis, pharmacological potential and biotechnological intercessions to boost production. Crit Rev Biotechnol 2022; 44:1-16. [PMID: 36184806 DOI: 10.1080/07388551.2022.2117681] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Accepted: 08/19/2022] [Indexed: 06/16/2023]
Abstract
Iridoid glycosides are monoterpenoids synthesized in several plant species known to exhibit a diverse range of pharmacological activities. They are used as important bioactive ingredients in many commercially available drug formulations and as lead compounds in pharmaceutical research. The genus Picrorhiza comprises two medicinally important herbs endemic to the Himalayan region viz. Picrorhiza kurrooa Royle and Picrorhiza scrophulariiflora Hong. The medicinal properties of these two species are mainly due to iridoid glycosides present in their root, rhizome, and leaves. Unregulated harvesting from the wild, habitat specificity, narrow distribution range, small population size and lack of organized cultivation led to the enrolling of these species in the endangered category by the International Union for Conservation of Nature and Natural Resources (IUCN). Therefore, there is a need for immediate biotechnological and molecular interventions. Such intercessions will open up new vistas for large-scale propagation, development of genomic/transcriptomic resources for understanding the biosynthetic pathway, the possibility of genetic/metabolic manipulations, and possible commercialization of iridoid glycosides. The current review article elucidates the phytochemistry and pharmacological importance of iridoid glycosides from the genus Picrorhiza. In addition, the role of biotechnological approaches and opportunities offered by next-generation sequencing technologies in overcoming challenges associated with the genetic engineering of these species are also discussed.
Collapse
Affiliation(s)
- Tanvi Sharma
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| | - Upendra Sharma
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
- Chemical Technology Division, CSIR-Institute of Himalayan Bioresource and Technology, Palampur, India
| | - Sanjay Kumar
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| |
Collapse
|
4
|
Ma Y, Ankit, Tiwari J, Bauddh K. Plant-Mycorrhizal Fungi Interactions in Phytoremediation of Geogenic Contaminated Soils. Front Microbiol 2022; 13:843415. [PMID: 35283821 PMCID: PMC8908265 DOI: 10.3389/fmicb.2022.843415] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2021] [Accepted: 01/25/2022] [Indexed: 11/26/2022] Open
Abstract
Soil contamination by geogenic contaminants (GCs) represents an imperative environmental problem. Various soil remediation methods have been successfully employed to ameliorate the health risks associated with GCs. Phytoremediation is considered as an eco-friendly and economical approach to revegetate GC-contaminated soils. However, it is a very slow process, as plants take a considerable amount of time to gain biomass. Also, the process is limited only to the depth and surface area of the root. Inoculation of arbuscular mycorrhizal fungi (AMF) with remediating plants has been found to accelerate the phytoremediation process by enhancing plant biomass and their metal accumulation potential while improving the soil physicochemical and biological characteristics. Progress in the field application is hindered by a lack of understanding of complex interactions between host plant and AMF that contribute to metal detoxification/(im)mobilization/accumulation/translocation. Thus, this review is an attempt to reveal the underlying mechanisms of plant-AMF interactions in phytoremediation.
Collapse
Affiliation(s)
- Ying Ma
- College of Resources and Environment, Southwest University, Chongqing, China
| | - Ankit
- Department of Environmental Sciences, Central University of Jharkhand, Ranchi, India
| | - Jaya Tiwari
- Department of Community Medicine and School of Public Health, Postgraduate Institute of Medical Education and Research, Chandigarh, India
| | - Kuldeep Bauddh
- Department of Environmental Sciences, Central University of Jharkhand, Ranchi, India
| |
Collapse
|
5
|
Fujita K, Inui H. Review: Biological functions of major latex-like proteins in plants. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2021; 306:110856. [PMID: 33775363 DOI: 10.1016/j.plantsci.2021.110856] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Revised: 01/20/2021] [Accepted: 02/14/2021] [Indexed: 05/23/2023]
Abstract
Major latex-like proteins (MLPs) have been identified in dicots and monocots. They are members of the birch pollen allergen Bet v 1 family as well as pathogenesis-related proteins class 10. MLPs have two main features. One is binding affinity toward various hydrophobic compounds, such as long-chain fatty acids, steroids, and systemic acquired resistance signals, via its internal hydrophobic cavity or hydrophobic residues on its surface. MLPs transport such compounds to other organs via phloem and xylem vessels and contribute to the expression of physiologically important ligands' activity in the particular organs. The second feature is responses to abiotic and biotic stresses. MLPs are involved in drought and salt tolerance through the mediation of plant hormone signaling pathways. MLPs generate resistance against pathogens by the induction of pathogenesis-related protein genes. Therefore, MLPs play crucial roles in drought and salt tolerance and resistance against pathogens. However, knowledge of MLPs is fragmented, and an overview of them is needed. Herein, we summarize the current knowledge of the biological functions of MLPs, which to our knowledge, is the first review about MLPs that has been reported.
Collapse
Affiliation(s)
- Kentaro Fujita
- Graduate School of Agricultural Science, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501, Japan.
| | - Hideyuki Inui
- Graduate School of Agricultural Science, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501, Japan; Biosignal Research Center, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501, Japan.
| |
Collapse
|
6
|
Abstract
Root rot diseases remain a major global threat to the productivity of agricultural crops. They are usually caused by more than one type of pathogen and are thus often referred to as a root rot complex. Fungal and oomycete species are the predominant participants in the complex, while bacteria and viruses are also known to cause root rot. Incorporating genetic resistance in cultivated crops is considered the most efficient and sustainable solution to counter root rot, however, resistance is often quantitative in nature. Several genetics studies in various crops have identified the quantitative trait loci associated with resistance. With access to whole genome sequences, the identity of the genes within the reported loci is becoming available. Several of the identified genes have been implicated in pathogen responses. However, it is becoming apparent that at the molecular level, each pathogen engages a unique set of proteins to either infest the host successfully or be defeated or contained in attempting so. In this review, a comprehensive summary of the genes and the potential mechanisms underlying resistance or susceptibility against the most investigated root rots of important agricultural crops is presented.
Collapse
|
7
|
Electroacupuncture Pretreatment against Cerebral Ischemia/Reperfusion Injury through Mitophagy. EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE 2020; 2020:7486041. [PMID: 32963572 PMCID: PMC7499311 DOI: 10.1155/2020/7486041] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Revised: 08/18/2020] [Accepted: 09/02/2020] [Indexed: 12/13/2022]
Abstract
Cerebral ischemia/reperfusion (I/R) injury can induce the mitophagy of neurons in the ischemic brain. Electroacupuncture (EA) pretreatment has a protective effect on cerebral ischemia/reperfusion injury. However, its internal mechanism still needs to be further studied. The present study's purpose is to investigate whether mitophagy is involved in neuroprotection elicited by EA pretreatment in a rat model of cerebral ischemia/reperfusion injury. The rats were pretreated with vehicle, EA at the Baihui (GV20) and Shuigou (GV26) acupoints 30 min daily, for 5 days consecutively prior to the focal cerebral ischemia injury induced by the middle cerebral artery occlusion (MCAO) model. Compared to the sham group, the neurological scores, infarction volume, number of autophagosomes, FUNDC1, p62, and the ratio of LC3-II/I were significantly increased but mitochondrial membrane potential and autophagy-related protein p-mTORC1 significantly decreased in the I/R group. However, EA pretreatment significantly reversed these trends. Overall, the results of this study demonstrated that EA pretreatment protected the cerebral ischemia/reperfusion injury which maybe correlated with mitophagy.
Collapse
|
8
|
Engelhardt S, Trutzenberg A, Hückelhoven R. Regulation and Functions of ROP GTPases in Plant-Microbe Interactions. Cells 2020; 9:E2016. [PMID: 32887298 PMCID: PMC7565977 DOI: 10.3390/cells9092016] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 08/28/2020] [Accepted: 08/31/2020] [Indexed: 02/07/2023] Open
Abstract
Rho proteins of plants (ROPs) form a specific clade of Rho GTPases, which are involved in either plant immunity or susceptibility to diseases. They are intensively studied in grass host plants, in which ROPs are signaling hubs downstream of both cell surface immune receptor kinases and intracellular nucleotide-binding leucine-rich repeat receptors, which activate major branches of plant immune signaling. Additionally, invasive fungal pathogens may co-opt the function of ROPs for manipulation of the cytoskeleton, cell invasion and host cell developmental reprogramming, which promote pathogenic colonization. Strikingly, mammalian bacterial pathogens also initiate both effector-triggered susceptibility for cell invasion and effector-triggered immunity via Rho GTPases. In this review, we summarize central concepts of Rho signaling in disease and immunity of plants and briefly compare them to important findings in the mammalian research field. We focus on Rho activation, downstream signaling and cellular reorganization under control of Rho proteins involved in disease progression and pathogen resistance.
Collapse
Affiliation(s)
| | | | - Ralph Hückelhoven
- Phytopathology, TUM School of Life Sciences Weihenstephan, Technical University of Munich, Emil-Ramann-Straße 2, 85354 Freising, Germany; (S.E.); (A.T.)
| |
Collapse
|
9
|
Fonseca-García C, Zayas AE, Montiel J, Nava N, Sánchez F, Quinto C. Transcriptome analysis of the differential effect of the NADPH oxidase gene RbohB in Phaseolus vulgaris roots following Rhizobium tropici and Rhizophagus irregularis inoculation. BMC Genomics 2019; 20:800. [PMID: 31684871 PMCID: PMC6827182 DOI: 10.1186/s12864-019-6162-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2019] [Accepted: 10/09/2019] [Indexed: 12/22/2022] Open
Abstract
BACKGROUND Reactive oxygen species (ROS) are generated by NADPH oxidases known as respiratory burst oxidase homologs (RBOHs) in plants. ROS regulate various cellular processes, including the mutualistic interactions between legumes and nitrogen-fixing bacteria or arbuscular mycorrhizal (AM) fungi. Rboh is a multigene family comprising nine members (RbohA-I) in common bean (Phaseolus vulgaris). The RNA interference-mediated silencing of RbohB (PvRbohB-RNAi) in this species diminished its ROS production and greatly impaired nodulation. By contrast, the PvRbohB-RNAi transgenic roots showed early hyphal root colonization with enlarged fungal hypopodia; therefore, we proposed that PvRbohB positively regulates rhizobial infection (Rhizobium tropici) and inhibits AM colonization by Rhizophagus irregularis in P. vulgaris. RESULTS To corroborate this hypothesis, an RNA-Seq transcriptomic analysis was performed to identify the differentially expressed genes in the PvRbohB-RNAi roots inoculated with Rhizobium tropici or Rhizophagus irregularis. We found that, in the early stages, root nodule symbioses generated larger changes of the transcriptome than did AM symbioses in P. vulgaris. Genes related to ROS homeostasis and cell wall flexibility were markedly upregulated in the early stages of rhizobial colonization, but not during AM colonization. Compared with AM colonization, the rhizobia induced the expression of a greater number of genes encoding enzymes involved in the metabolism of auxins, cytokinins, and ethylene, which were typically repressed in the PvRbohB-RNAi roots. CONCLUSIONS Our research provides substantial insights into the genetic interaction networks in the early stages of rhizobia and AM symbioses with P. vulgaris, as well as the differential roles that RbohB plays in processes related to ROS scavenging, cell wall remodeling, and phytohormone homeostasis during nodulation and mycorrhization in this legume.
Collapse
Affiliation(s)
- Citlali Fonseca-García
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, Cuernavaca, Morelos, 62210, Mexico
| | - Alejandra E Zayas
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, Cuernavaca, Morelos, 62210, Mexico
| | - Jesús Montiel
- Department of Molecular Biology and Genetics, Aarhus University, C 8000, Aarhus, Denmark
| | - Noreide Nava
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, Cuernavaca, Morelos, 62210, Mexico
| | - Federico Sánchez
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, Cuernavaca, Morelos, 62210, Mexico
| | - Carmen Quinto
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, Cuernavaca, Morelos, 62210, Mexico.
| |
Collapse
|
10
|
Zhai L, Sun C, Feng Y, Li D, Chai X, Wang L, Sun Q, Zhang G, Li Y, Wu T, Zhang X, Xu X, Wang Y, Han Z. At
ROP
6
is involved in reactive oxygen species signaling in response to iron‐deficiency stress in
Arabidopsis thaliana. FEBS Lett 2018; 592:3446-3459. [DOI: 10.1002/1873-3468.13257] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Revised: 08/25/2018] [Accepted: 09/01/2018] [Indexed: 01/01/2023]
Affiliation(s)
- Longmei Zhai
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Chaohua Sun
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Yi Feng
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Duyue Li
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Xiaofen Chai
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Lei Wang
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Qiran Sun
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Guifen Zhang
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Yi Li
- Department of Plant Science and Landscape Architecture University of Connecticut Storrs CT USA
| | - Ting Wu
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Xinzhong Zhang
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Xuefeng Xu
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Yi Wang
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| | - Zhenhai Han
- College of Horticulture China Agricultural University Beijing China
- Key Laboratory of Stress Physiology and Molecular Biology for Fruit Trees in Beijing Municipality China Agricultural University Beijing China
| |
Collapse
|
11
|
Upasani ML, Limaye BM, Gurjar GS, Kasibhatla SM, Joshi RR, Kadoo NY, Gupta VS. Chickpea-Fusarium oxysporum interaction transcriptome reveals differential modulation of plant defense strategies. Sci Rep 2017; 7:7746. [PMID: 28798320 PMCID: PMC5552786 DOI: 10.1038/s41598-017-07114-x] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2016] [Accepted: 06/21/2017] [Indexed: 12/22/2022] Open
Abstract
Fusarium wilt is one of the major biotic stresses reducing chickpea productivity. The use of wilt-resistant cultivars is the most appropriate means to combat the disease and secure productivity. As a step towards understanding the molecular basis of wilt resistance in chickpea, we investigated the transcriptomes of wilt-susceptible and wilt-resistant cultivars under both Fusarium oxysporum f.sp. ciceri (Foc) challenged and unchallenged conditions. Transcriptome profiling using LongSAGE provided a valuable insight into the molecular interactions between chickpea and Foc, which revealed several known as well as novel genes with differential or unique expression patterns in chickpea contributing to lignification, hormonal homeostasis, plant defense signaling, ROS homeostasis, R-gene mediated defense, etc. Similarly, several Foc genes characteristically required for survival and growth of the pathogen were expressed only in the susceptible cultivar with null expression of most of these genes in the resistant cultivar. This study provides a rich resource for functional characterization of the genes involved in resistance mechanism and their use in breeding for sustainable wilt-resistance. Additionally, it provides pathogen targets facilitating the development of novel control strategies.
Collapse
Affiliation(s)
- Medha L Upasani
- Biochemical Sciences Division, CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pashan, Pune, 411008, India.,Department of Microbiology, Savitribai Phule Pune University, Pune, 411007, India
| | - Bhakti M Limaye
- HPC-Medical and Bioinformatics Applications Group, Center for Development of Advanced Computing, Savitribai Phule Pune University Campus, Pune, 411007, India
| | - Gayatri S Gurjar
- Biochemical Sciences Division, CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pashan, Pune, 411008, India
| | - Sunitha M Kasibhatla
- HPC-Medical and Bioinformatics Applications Group, Center for Development of Advanced Computing, Savitribai Phule Pune University Campus, Pune, 411007, India
| | - Rajendra R Joshi
- HPC-Medical and Bioinformatics Applications Group, Center for Development of Advanced Computing, Savitribai Phule Pune University Campus, Pune, 411007, India
| | - Narendra Y Kadoo
- Biochemical Sciences Division, CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pashan, Pune, 411008, India.
| | - Vidya S Gupta
- Biochemical Sciences Division, CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pashan, Pune, 411008, India.
| |
Collapse
|
12
|
Nath M, Bhatt D, Prasad R, Gill SS, Anjum NA, Tuteja N. Reactive Oxygen Species Generation-Scavenging and Signaling during Plant-Arbuscular Mycorrhizal and Piriformospora indica Interaction under Stress Condition. FRONTIERS IN PLANT SCIENCE 2016; 7:1574. [PMID: 27818671 PMCID: PMC5073151 DOI: 10.3389/fpls.2016.01574] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2016] [Accepted: 10/06/2016] [Indexed: 05/18/2023]
Abstract
A defined balance between the generation and scavenging of reactive oxygen species (ROS) is essential to utilize ROS as an adaptive defense response of plants under biotic and abiotic stress conditions. Moreover, ROS are not only a major determinant of stress response but also act as signaling molecule that regulates various cellular processes including plant-microbe interaction. In particular, rhizosphere constitutes the biologically dynamic zone for plant-microbe interactions which forms a mutual link leading to reciprocal signaling in both the partners. Among plant-microbe interactions, symbiotic associations of arbuscular mycorrhizal fungi (AMF) and arbuscular mycorrhizal-like fungus especially Piriformospora indica with plants are well known to improve plant growth by alleviating the stress-impacts and consequently enhance the plant fitness. AMF and P. indica colonization mainly enhances ROS-metabolism, maintains ROS-homeostasis, and thereby averts higher ROS-level accrued inhibition in plant cellular processes and plant growth and survival under stressful environments. This article summarizes the major outcomes of the recent reports on the ROS-generation, scavenging and signaling in biotic-abiotic stressed plants with AMF and P. indica colonization. Overall, a detailed exploration of ROS-signature kinetics during plant-AMF/P. indica interaction can help in designing innovative strategies for improving plant health and productivity under stress conditions.
Collapse
Affiliation(s)
- Manoj Nath
- Amity Institute of Microbial Technology, Amity University Uttar PradeshNoida, India
- *Correspondence: Manoj Nath, Narendra Tuteja,
| | - Deepesh Bhatt
- Department of Biotechnology, Shree Ramkrishna Institute of Computer Education and Applied Sciences, Veer Narmad South Gujarat UniversitySurat, India
| | - Ram Prasad
- Amity Institute of Microbial Technology, Amity University Uttar PradeshNoida, India
| | - Sarvajeet S. Gill
- Stress Physiology and Molecular Biology Laboratory, Centre for Biotechnology, Maharshi Dayanand UniversityRohtak, India
| | - Naser A. Anjum
- Centre for Environmental and Marine Studies and Department of Chemistry, University of AveiroAveiro, Portugal
| | - Narendra Tuteja
- Amity Institute of Microbial Technology, Amity University Uttar PradeshNoida, India
- *Correspondence: Manoj Nath, Narendra Tuteja,
| |
Collapse
|
13
|
Galindo-González L, Deyholos MK. RNA-seq Transcriptome Response of Flax ( Linum usitatissimum L.) to the Pathogenic Fungus Fusarium oxysporum f. sp. lini. FRONTIERS IN PLANT SCIENCE 2016; 7:1766. [PMID: 27933082 PMCID: PMC5121121 DOI: 10.3389/fpls.2016.01766] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2016] [Accepted: 11/09/2016] [Indexed: 05/19/2023]
Abstract
Fusarium oxysporum f. sp. lini is a hemibiotrophic fungus that causes wilt in flax. Along with rust, fusarium wilt has become an important factor in flax production worldwide. Resistant flax cultivars have been used to manage the disease, but the resistance varies, depending on the interactions between specific cultivars and isolates of the pathogen. This interaction has a strong molecular basis, but no genomic information is available on how the plant responds to attempted infection, to inform breeding programs on potential candidate genes to evaluate or improve resistance across cultivars. In the current study, disease progression in two flax cultivars [Crop Development Center (CDC) Bethune and Lutea], showed earlier disease symptoms and higher susceptibility in the later cultivar. Chitinase gene expression was also divergent and demonstrated and earlier molecular response in Lutea. The most resistant cultivar (CDC Bethune) was used for a full RNA-seq transcriptome study through a time course at 2, 4, 8, and 18 days post-inoculation (DPI). While over 100 genes were significantly differentially expressed at both 4 and 8 DPI, the broadest deployment of plant defense responses was evident at 18 DPI with transcripts of more than 1,000 genes responding to the treatment. These genes evidenced a reception and transduction of pathogen signals, a large transcriptional reprogramming, induction of hormone signaling, activation of pathogenesis-related genes, and changes in secondary metabolism. Among these, several key genes that consistently appear in studies of plant-pathogen interactions, had increased transcript abundance in our study, and constitute suitable candidates for resistance breeding programs. These included: an induced RPMI-induced protein kinase; transcription factors WRKY3, WRKY70, WRKY75, MYB113, and MYB108; the ethylene response factors ERF1 and ERF14; two genes involved in auxin/glucosinolate precursor synthesis (CYP79B2 and CYP79B3); the flavonoid-related enzymes chalcone synthase, dihydroflavonol reductase and multiple anthocyanidin synthases; and a peroxidase implicated in lignin formation (PRX52). Additionally, regulation of some genes indicated potential pathogen manipulation to facilitate infection; these included four disease resistance proteins that were repressed, indole acetic acid amido/amino hydrolases which were upregulated, activated expansins and glucanases, amino acid transporters and aquaporins, and finally, repression of major latex proteins.
Collapse
Affiliation(s)
| | - Michael K. Deyholos
- IK Barber School of Arts and Sciences, University of British Columbia, KelownaBC, Canada
- *Correspondence: Michael K. Deyholos,
| |
Collapse
|
14
|
Weldearegay YB, Pich A, Schieck E, Liljander A, Gicheru N, Wesonga H, Thiaucourt F, Kiirika LM, Valentin-Weigand P, Jores J, Meens J. Proteomic characterization of pleural effusion, a specific host niche of Mycoplasma mycoides subsp. mycoides from cattle with contagious bovine pleuropneumonia (CBPP). J Proteomics 2015; 131:93-103. [PMID: 26476145 DOI: 10.1016/j.jprot.2015.10.016] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2015] [Revised: 09/30/2015] [Accepted: 10/09/2015] [Indexed: 10/22/2022]
Abstract
Mycoplasma mycoides subsp. mycoides (Mmm) is the causative agent of contagious bovine pleuropneumonia (CBPP), a severe pleuropneumonia in cattle. The abnormal accumulation of pleural fluid, called pleural effusion (PE), is one of the characteristics of this disease. We performed a proteomic analysis of seven PE samples from experimentally infected cattle and characterized their composition with respect to bovine and Mmm proteins. We detected a total of 963 different bovine proteins. Further analysis indicated a strong enrichment of proteins involved in antigen processing, platelet activation and degranulation and apoptosis and an increased abundance of acute phase proteins.With regard to the pathogen, up to 108 viable mycoplasma cells per ml were detected in the PE supernatant. The proteomic analysis revealed 350 mycoplasma proteins, including proteins involved in virulence-associated processes like hydrogen peroxide (H2O2) production and capsule synthesis. The bovine proteins detected will aid to characterize the inflammasome during an acute pleuropneumonia in cattle and the identified mycoplasma proteins will serve as baseline data to be compared with in vitro studies to improve our understanding of pathogenicity mechanisms. Based on our results, we named the pleural effusion an “in vivo niche” of Mmm during the acute phase of CBPP. Biological significance: This is the first study on bovine pleural effusions derived from an infectious disease and the first approach to characterize the proteome of Mycoplasma mycoides in vivo. This study revealed a high number of viable Mmm cells in the pleural effusion. The bovine pleural effusion proteome during Mmm infection is qualitatively similar to plasma, but differs with respect to high abundance of acute phase proteins. On the other hand,Mmm in its natural host produces proteins involved in capsule synthesis, H2O2 production and induction of inflammatory response, supporting previous knowledge on mechanisms underlying the survival and virulence of this pathogen while inside the natural host. This knowledge forms a profound basis for testing the identified protein candidates for diagnostics or vaccines.
Collapse
Affiliation(s)
- Yenehiwot B Weldearegay
- Institute for Microbiology, Department of Infectious Diseases, University of Veterinary Medicine Hannover, Hannover, Germany
| | - Andreas Pich
- Core Unit Proteomics, Hannover Medical School, Hannover, Germany
| | - Elise Schieck
- International Livestock Research Institute, Old Naivasha Road, P. O. Box 30709, 00100 Nairobi, Kenya
| | - Anne Liljander
- International Livestock Research Institute, Old Naivasha Road, P. O. Box 30709, 00100 Nairobi, Kenya
| | - Nimmo Gicheru
- International Livestock Research Institute, Old Naivasha Road, P. O. Box 30709, 00100 Nairobi, Kenya
| | - Hezron Wesonga
- Kenya Agricultural & Livestock Research Organization (KALRO), P. O. Box 32, 00902 Kikuyu, Kenya
| | - Francois Thiaucourt
- Centre de coopération internationale en recherche agronomique pour le développement (CIRAD) UMR CMAEE, Montpellier F-34398, France; INRA, UMR1309 CMAEE, Montpellier F-34398, France
| | - Leonard M Kiirika
- Department of Plant Molecular Biology, Institute for Plant Genetics, Leibniz University Hannover, Hannover, Germany
| | - Peter Valentin-Weigand
- Institute for Microbiology, Department of Infectious Diseases, University of Veterinary Medicine Hannover, Hannover, Germany
| | - Joerg Jores
- International Livestock Research Institute, Old Naivasha Road, P. O. Box 30709, 00100 Nairobi, Kenya; Institute of Veterinary Bacteriology, University of Bern, CH-3001 Bern, Switzerland
| | - Jochen Meens
- Institute for Microbiology, Department of Infectious Diseases, University of Veterinary Medicine Hannover, Hannover, Germany.
| |
Collapse
|