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Zhao XR, Zhao DT, Zhang LY, Chang JH, Cui JH. Combining transcriptome and metabolome analysis to understand the response of sorghum to Melanaphis sacchari. BMC PLANT BIOLOGY 2024; 24:529. [PMID: 38862926 PMCID: PMC11165916 DOI: 10.1186/s12870-024-05229-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Accepted: 05/31/2024] [Indexed: 06/13/2024]
Abstract
BACKGROUND The sorghum aphid Melanaphis sacchari (Zehntner) (Homoptera: Aphididae) is an important insect in the late growth phase of sorghum (Sorghum bicolor L.). However, the mechanisms of sorghum response to aphid infestation are unclear. RESULTS In this paper, the mechanisms of aphid resistance in different types of sorghum varieties were revealed by studying the epidermal cell structure and performing a transcriptome and metabolome association analysis of aphid-resistant and aphid-susceptible varieties. The epidermal cell results showed that the resistance of sorghum to aphids was positively correlated with epidermal cell regularity and negatively correlated with the intercellular space and leaf thickness. Transcriptome and metabolomic analyses showed that differentially expressed genes in the resistant variety HN16 and susceptible variety BTX623 were mainly enriched in the flavonoid biosynthesis pathway and differentially expressed metabolites were mainly related to isoflavonoid biosynthesis and flavonoid biosynthesis. The q-PCR results of key genes were consistent with the transcriptome expression results. Meanwhile, the metabolome test results showed that after aphidinfestation, naringenin and genistein were significantly upregulated in the aphid-resistant variety HN16 and aphid-susceptible variety BTX623 while luteolin was only significantly upregulated in BTX623. These results show that naringenin, genistein, and luteolin play important roles in plant resistance to aphid infestation. The results of exogenous spraying tests showed that a 1‰ concentration of naringenin and genistein is optimal for improving sorghum resistance to aphid feeding. CONCLUSIONS In summary, the physical properties of the sorghum leaf structure related to aphid resistance were studied to provide a reference for the breeding of aphid-resistant varieties. The flavonoid biosynthesis pathway plays an important role in the response of sorghum aphids and represents an important basis for the biological control of these pests. The results of the spraying experiment provide insights for developing anti-aphid substances in the future.
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Affiliation(s)
- Xin-Rui Zhao
- College of Agronomy, Hebei Agricultural University, Baoding, 071000, China
- North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Baoding, 071000, China
| | - Dong-Ting Zhao
- College of Agronomy, Hebei Agricultural University, Baoding, 071000, China
- North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Baoding, 071000, China
| | - Ling-Yu Zhang
- College of Agronomy, Hebei Agricultural University, Baoding, 071000, China
- North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Baoding, 071000, China
| | - Jin-Hua Chang
- College of Agronomy, Hebei Agricultural University, Baoding, 071000, China.
- North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Baoding, 071000, China.
| | - Jiang-Hui Cui
- College of Agronomy, Hebei Agricultural University, Baoding, 071000, China.
- North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Baoding, 071000, China.
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Lohn AF, Trtikova M, Chapela I, van den Berg J, du Plessis H, Hilbeck A. Effect of herbivore stress on transgene behaviour in maize crosses with different genetic backgrounds: cry1Ab transgene transcription, insecticidal protein expression and bioactivity against insect pests. ENVIRONMENTAL SCIENCES EUROPE 2023; 35:106. [PMID: 38037561 PMCID: PMC10684648 DOI: 10.1186/s12302-023-00815-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Accepted: 11/18/2023] [Indexed: 12/02/2023]
Abstract
Background Decades after their first commercial release, many theoretical assumptions are still taken for granted in the deployment of genetically modified (GM) crops. Theoretically, in the case of maize, active transcription of the cry1Ab transgene would result in dose-dependent production of the insecticidal Cry1Ab protein, which would in turn induce dose-dependent mortality on lepidopteran pests. We produced data to realistically approach this question by using a model that includes two genetic background contexts from two geographical provenances in Brazil and South Africa, and two lepidopteran pests (Helicoverpa armigera and Spodoptera littoralis). However, in this study, the effect of insect herbivory was superimposed to investigate possible stress-induced effects in transgene expression at three levels: mRNA, protein and bioactivity. Results Overall, we found that herbivore damage by H. armigera was reflected only at the translational level, with a higher level of Cry1Ab protein measured in the Brazilian crosses under herbivore stress. On the other hand, compared to non-stress growing conditions, the herbivore damage by S. littoralis was not directly reflected in mRNA, protein or bioactivity in the South African crosses. Conclusions The differences between South African and Brazilian genetic backgrounds, and between the stressor effect of the two herbivores used, highlight the complexity of transgene expression at the agroecological level. Supplementary Information The online version contains supplementary material available at 10.1186/s12302-023-00815-3.
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Affiliation(s)
- André Felipe Lohn
- Plant Ecological Genetics, Institute of Integrative Biology, Department of Environmental Systems Science, ETH Zürich, Zurich, Switzerland
| | - Miluse Trtikova
- Plant Ecological Genetics, Institute of Integrative Biology, Department of Environmental Systems Science, ETH Zürich, Zurich, Switzerland
| | - Ignacio Chapela
- Department of Environmental Science, Policy and Management, University of California Berkeley, Berkeley, CA USA
| | - Johnnie van den Berg
- Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa
| | - Hannalene du Plessis
- Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa
| | - Angelika Hilbeck
- Plant Ecological Genetics, Institute of Integrative Biology, Department of Environmental Systems Science, ETH Zürich, Zurich, Switzerland
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Zhang X, Liu D, Gao D, Zhao W, Du H, Qiu Z, Huang J, Wen P, Wang Y, Li Q, Wang W, Xu H, He J, Liu Y, Wan J. Cytokinin Confers Brown Planthopper Resistance by Elevating Jasmonic Acid Pathway in Rice. Int J Mol Sci 2022; 23:5946. [PMID: 35682620 PMCID: PMC9180265 DOI: 10.3390/ijms23115946] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 05/22/2022] [Accepted: 05/22/2022] [Indexed: 01/23/2023] Open
Abstract
Plants have evolved a sophisticated defense system that employs various hormone pathways to defend against attacks by insect pests. Cytokinin (CK) plays an important role in plant growth and stress tolerance, but the role of CKs in plant-insect interaction remains largely unclear. Here, we report that CKs act as a positive regulator in rice resistance against brown planthopper (BPH), a devastating insect pest of rice. We found that BPH feeding promotes CK biosynthesis and signaling in rice. Exogenous application of CKs significantly increased the rice resistance to BPH. Increasing endogenous CKs by knocking out cytokinin oxidase/dehydrogenase (OsCKXs) led to enhanced resistance to BPH. Moreover, the levels of the plant hormone jasmonic acid (JA) and the expression of JA-responsive genes were elevated by CK treatment and in OsCKXs knockout plants. Furthermore, JA-deficient mutant og1 was more susceptible to BPH, and CK-induced BPH resistance was suppressed in og1. These results indicate that CK-mediated BPH resistance is JA-dependent. Our findings provide the direct evidence for the novel role of CK in promoting insect resistance, and demonstrate that CK-induced insect resistance is JA-dependent. These results provide important guidance for effective pest management strategies in the future.
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Affiliation(s)
- Xiao Zhang
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Daoming Liu
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Dong Gao
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Weining Zhao
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Huaying Du
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Zeyu Qiu
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Jie Huang
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Peizheng Wen
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Yongsheng Wang
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Qi Li
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Wenhui Wang
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Haosen Xu
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Jun He
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Yuqiang Liu
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
| | - Jianmin Wan
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Research Center of Plant Gene Editing Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China; (X.Z.); (D.L.); (D.G.); (W.Z.); (H.D.); (Z.Q.); (J.H.); (P.W.); (Y.W.); (Q.L.); (W.W.); (H.X.); (J.H.)
- National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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Florencio-Ortiz V, Sellés-Marchart S, Casas JL. Proteome changes in pepper (Capsicum annuum L.) leaves induced by the green peach aphid (Myzus persicae Sulzer). BMC PLANT BIOLOGY 2021; 21:12. [PMID: 33407137 PMCID: PMC7788789 DOI: 10.1186/s12870-020-02749-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Accepted: 11/22/2020] [Indexed: 05/09/2023]
Abstract
BACKGROUND Aphid attack induces defense responses in plants activating several signaling cascades that led to the production of toxic, repellent or antinutritive compounds and the consequent reorganization of the plant primary metabolism. Pepper (Capsicum annuum L.) leaf proteomic response against Myzus persicae (Sulzer) has been investigated and analyzed by LC-MS/MS coupled with bioinformatics tools. RESULTS Infestation with an initially low density (20 aphids/plant) of aphids restricted to a single leaf taking advantage of clip cages resulted in 6 differentially expressed proteins relative to control leaves (3 proteins at 2 days post-infestation and 3 proteins at 4 days post-infestation). Conversely, when plants were infested with a high density of infestation (200 aphids/plant) 140 proteins resulted differentially expressed relative to control leaves (97 proteins at 2 days post-infestation, 112 proteins at 4 days post-infestation and 105 proteins at 7 days post-infestation). The majority of proteins altered by aphid attack were involved in photosynthesis and photorespiration, oxidative stress, translation, protein folding and degradation and amino acid metabolism. Other proteins identified were involved in lipid, carbohydrate and hormone metabolism, transcription, transport, energy production and cell organization. However proteins directly involved in defense were scarce and were mostly downregulated in response to aphids. CONCLUSIONS The unexpectedly very low number of regulated proteins found in the experiment with a low aphid density suggests an active mitigation of plant defensive response by aphids or alternatively an aphid strategy to remain undetected by the plant. Under a high density of aphids, pepper leaf proteome however changed significantly revealing nearly all routes of plant primary metabolism being altered. Photosynthesis was so far the process with the highest number of proteins being regulated by the presence of aphids. In general, at short times of infestation (2 days) most of the altered proteins were upregulated. However, at longer times of infestation (7 days) the protein downregulation prevailed. Proteins involved in plant defense and in hormone signaling were scarce and mostly downregulated.
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Affiliation(s)
- Victoria Florencio-Ortiz
- Unidad Asociada CSIC-UA IPAB. Instituto Universitario de Investigación CIBIO (Centro Iberoamericano de la Biodiversidad), University of Alicante, Carretera de San Vicente del Raspeig, s/n, E-03690 San Vicente del Raspeig, Alicante, Spain.
| | - Susana Sellés-Marchart
- Genomics and Proteomics Unit, Servicios Técnicos de Investigación, University of Alicante, Carretera de San Vicente del Raspeig, s/n, E-03690 San Vicente del Raspeig, Alicante, Spain
| | - José L Casas
- Unidad Asociada CSIC-UA IPAB. Instituto Universitario de Investigación CIBIO (Centro Iberoamericano de la Biodiversidad), University of Alicante, Carretera de San Vicente del Raspeig, s/n, E-03690 San Vicente del Raspeig, Alicante, Spain
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Li H, Zhou Z, Hua H, Ma W. Comparative transcriptome analysis of defense response of rice to Nilaparvata lugens and Chilo suppressalis infestation. Int J Biol Macromol 2020; 163:2270-2285. [PMID: 32971164 DOI: 10.1016/j.ijbiomac.2020.09.105] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Revised: 09/07/2020] [Accepted: 09/14/2020] [Indexed: 10/23/2022]
Abstract
The brown planthopper (BPH, Nilaparvata lugens) and striped stem borer (SSB, Chilo suppressalis) are two of the most devastating insect pests in rice, causing significant losses of rice yield. Plants evolve multiple defense responses in the process of coexisting with pests. According to different pest infestation, the plants selectively activate related pathways and downstream gene expression. However, there are very few reports of differences in defense signaling pathways after rice was attacked by BPH or SSB. We determined the transcriptional responses of rice infested with BPH and SSB for 3 and 6 h using Illumina sequencing. By comparing the difference in gene changes caused by BPH and SSB infestation in rice, multiple signal pathways and gene expression patterns, including phytohormones, secondary metabolites, plant-pathogen interaction, reactive oxygen species, defense response, transcription factors, protease inhibitor and chitinase were found significantly different. Our results provide a basis for further exploring the molecular mechanism of rice defense response caused by BPH and SSB infestation, which will add to further understanding the interactions between plants and insects, and could provide valuable resources that could be applied in insect-resistant crop breeding.
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Affiliation(s)
- Hanpeng Li
- National Key Laboratory of Crop Genetic Improvement, National Centre of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, Hubei, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China
| | - Zaihui Zhou
- National Key Laboratory of Crop Genetic Improvement, National Centre of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, Hubei, China
| | - Hongxia Hua
- National Key Laboratory of Crop Genetic Improvement, National Centre of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, Hubei, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China
| | - Weihua Ma
- National Key Laboratory of Crop Genetic Improvement, National Centre of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, Hubei, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China.
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6
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Lu Z, Dang C, Wang F, Liu Z, Chen J, Wang Y, Yao H, Fang Q, Peng Y, Gatehouse AMR, Hua H, Ye G. Does long-term Bt rice planting pose risks to spider communities and their capacity to control planthoppers? PLANT BIOTECHNOLOGY JOURNAL 2020; 18:1851-1853. [PMID: 32058661 PMCID: PMC7415778 DOI: 10.1111/pbi.13358] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2019] [Revised: 02/03/2020] [Accepted: 02/07/2020] [Indexed: 05/03/2023]
Affiliation(s)
- Zengbin Lu
- State Key Laboratory of Rice Biology & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and InsectsInstitute of Insect SciencesZhejiang UniversityHangzhouChina
| | - Cong Dang
- State Key Laboratory of Rice Biology & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and InsectsInstitute of Insect SciencesZhejiang UniversityHangzhouChina
| | - Fang Wang
- State Key Laboratory of Rice Biology & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and InsectsInstitute of Insect SciencesZhejiang UniversityHangzhouChina
| | - Zhicheng Liu
- State Key Laboratory of Rice Biology & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and InsectsInstitute of Insect SciencesZhejiang UniversityHangzhouChina
| | - Jie Chen
- Hubei Insect Resources Utilization and Sustainable Pest Management Key LaboratoryCollege of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Yu Wang
- Hubei Insect Resources Utilization and Sustainable Pest Management Key LaboratoryCollege of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Hongwei Yao
- State Key Laboratory of Rice Biology & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and InsectsInstitute of Insect SciencesZhejiang UniversityHangzhouChina
| | - Qi Fang
- State Key Laboratory of Rice Biology & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and InsectsInstitute of Insect SciencesZhejiang UniversityHangzhouChina
| | - Yufa Peng
- State Key Laboratory for Biology of Plant Diseases and Insect PestsInstitute of Plant ProtectionChinese Academy of Agricultural SciencesBeijingChina
| | | | - Hongxia Hua
- Hubei Insect Resources Utilization and Sustainable Pest Management Key LaboratoryCollege of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Gongyin Ye
- State Key Laboratory of Rice Biology & Ministry of Agricultural and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and InsectsInstitute of Insect SciencesZhejiang UniversityHangzhouChina
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Hao Y, Geng P, Wu W, Wen Q, Rao M. Identification of Rice Varieties and Transgenic Characteristics Based on Near-Infrared Diffuse Reflectance Spectroscopy and Chemometrics. Molecules 2019; 24:molecules24244568. [PMID: 31847134 PMCID: PMC6943625 DOI: 10.3390/molecules24244568] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Revised: 11/29/2019] [Accepted: 12/10/2019] [Indexed: 12/31/2022] Open
Abstract
Background: In recent years, genetically modified technology has developed rapidly, and the potential impact of genetically modified foods on human health and the ecological environment has received increasing attention. The currently used methods for testing genetically modified foods are cumbersome, time-consuming, and expensive. This paper proposed a more efficient and convenient detection method. Methods: Near-infrared diffuse reflectance spectroscopy (NIRDRS) combined with multivariate calibration methods, including principal component analysis (PCA), partial least squares discriminant analysis (PLS-DA), and support vector machines (SVM), were used for identification of different rice varieties and transgenic (Bt63)/non-transgenic rice. Spectral pretreatment methods, including Norris–Williams smooth (NWS), standard normal variate (SNV), multiplicative scatter correction (MSC), and Savitzky–Golay 1st derivative (SG 1st-Der), were used for spectral noise reduction and effective information enhancement. Accuracy was used to evaluate the qualitative discriminant models. Results: The results showed that the SG 1st-Der pretreatment method, combined with the SVM, provided the optimal model to distinguish different rice varieties. The accuracy of the optimal model was 98.33%. For the discrimination model of transgenic/non-transgenic rice, the SNV-SVM model, MSC-SVM model, and SG 1st-Der-PLS-DA model all achieved good analysis results with the accuracy of 100%. Conclusion: The results showed that portable NIR spectroscopy combined with chemometrics methods could be used to identify rice varieties and transgenic characteristics (Bt63) due to its fast, non-destructive, and accurate advantages.
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Affiliation(s)
- Yong Hao
- School of Mechatronics & Vehicle Engineering, East China Jiaotong University, Nanchang 330013, China; (P.G.); (W.W.); (Q.W.)
- Correspondence: ; Tel.: +86-136-0706-0672
| | - Pei Geng
- School of Mechatronics & Vehicle Engineering, East China Jiaotong University, Nanchang 330013, China; (P.G.); (W.W.); (Q.W.)
| | - Wenhui Wu
- School of Mechatronics & Vehicle Engineering, East China Jiaotong University, Nanchang 330013, China; (P.G.); (W.W.); (Q.W.)
| | - Qinhua Wen
- School of Mechatronics & Vehicle Engineering, East China Jiaotong University, Nanchang 330013, China; (P.G.); (W.W.); (Q.W.)
| | - Min Rao
- Ganzhou Entry-Exit Inspection and Quarantine Bureau, Ganzhou 341000, China;
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8
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Barker HL, Riehl JF, Bernhardsson C, Rubert-Nason KF, Holeski LM, Ingvarsson PK, Lindroth RL. Linking plant genes to insect communities: Identifying the genetic bases of plant traits and community composition. Mol Ecol 2019; 28:4404-4421. [PMID: 31233634 DOI: 10.1111/mec.15158] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Revised: 05/31/2019] [Accepted: 06/03/2019] [Indexed: 12/30/2022]
Abstract
Community genetics aims to understand the effects of intraspecific genetic variation on community composition and diversity, thereby connecting community ecology with evolutionary biology. Thus far, research has shown that plant genetics can underlie variation in the composition of associated communities (e.g., insects, lichen and endophytes), and those communities can therefore be considered as extended phenotypes. This work, however, has been conducted primarily at the plant genotype level and has not identified the key underlying genes. To address this gap, we used genome-wide association mapping with a population of 445 aspen (Populus tremuloides) genets to identify the genes governing variation in plant traits (defence chemistry, bud phenology, leaf morphology, growth) and insect community composition. We found 49 significant SNP associations in 13 Populus genes that are correlated with chemical defence compounds and insect community traits. Most notably, we identified an early nodulin-like protein that was associated with insect community diversity and the abundance of interacting foundation species (ants and aphids). These findings support the concept that particular plant traits are the mechanistic link between plant genes and the composition of associated insect communities. In putting the "genes" into "genes to ecosystems ecology", this work enhances understanding of the molecular genetic mechanisms that underlie plant-insect associations and the consequences thereof for the structure of ecological communities.
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Affiliation(s)
- Hilary L Barker
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, USA
| | - Jennifer F Riehl
- Department of Entomology, University of Wisconsin-Madison, Madison, WI, USA
| | | | | | - Liza M Holeski
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA
| | - Pär K Ingvarsson
- Department of Plant Biology, Uppsala BioCenter, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Richard L Lindroth
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, USA.,Department of Entomology, University of Wisconsin-Madison, Madison, WI, USA
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9
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Sperotto RA, Grbic V, Pappas ML, Leiss KA, Kant MR, Wilson CR, Santamaria ME, Gao Y. Editorial: Plant Responses to Phytophagous Mites/Thrips and Search for Resistance. FRONTIERS IN PLANT SCIENCE 2019; 10:866. [PMID: 31333703 PMCID: PMC6620531 DOI: 10.3389/fpls.2019.00866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Accepted: 06/17/2019] [Indexed: 06/10/2023]
Affiliation(s)
- Raul A. Sperotto
- Graduate Program in Biotechnology, University of Taquari Valley–Univates, Lajeado, Brazil
| | - Vojislava Grbic
- Department of Biology, University of Western Ontario, London, ON, Canada
| | - Maria L. Pappas
- Department of Agricultural Development, Democritus University of Thrace, Orestiada, Greece
| | - Kirsten A. Leiss
- Horticulture, Wageningen University & Research, Wageningen, Netherlands
| | - Merijn R. Kant
- Department of Evolutionary and Population Biology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, Netherlands
| | - Calum R. Wilson
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS, Australia
| | - M. Estrella Santamaria
- Centro de Biotecnología y Genómica de Plantas, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Universidad Politécnica de Madrid, Madrid, Spain
| | - Yulin Gao
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
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10
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Zhou S, Chen M, Zhang Y, Gao Q, Noman A, Wang Q, Li H, Chen L, Zhou P, Lu J, Lou Y. OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics. Int J Mol Sci 2019; 20:E3023. [PMID: 31226870 PMCID: PMC6628034 DOI: 10.3390/ijms20123023] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Revised: 06/17/2019] [Accepted: 06/17/2019] [Indexed: 11/16/2022] Open
Abstract
Plants undergo several but very precise molecular, physiological, and biochemical modulations in response to biotic stresses. Mitogen-activated protein kinase (MAPK) cascades orchestrate multiple cellular processes including plant growth and development as well as plant responses against abiotic and biotic stresses. However, the role of MAPK kinases (MAPKKs/MKKs/MEKs) in the regulation of plant resistance to herbivores has not been extensively investigated. Here, we cloned a rice MKK gene, OsMKK3, and investigated its function. It was observed that mechanical wounding, infestation of brown planthopper (BPH) Nilaparvata lugens, and treatment with methyl jasmonate (MeJA) or salicylic acid (SA) could induce the expression of OsMKK3. The over-expression of OsMKK3 (oe-MKK3) increased levels of jasmonic acid (JA), jasmonoyl-L-isoleucine (JA-Ile), and abscisic acid (ABA), and decreased SA levels in rice after BPH attack. Additionally, the preference for feeding and oviposition, the hatching rate of BPH eggs, and BPH nymph survival rate were significantly compromised due to over-expression of OsMKK3. Besides, oe-MKK3 also augmented chlorophyll content but impaired plant growth. We confirm that MKK3 plays a pivotal role in the signaling pathway. It is proposed that OsMKK3 mediated positive regulation of rice resistance to BPH by means of herbivory-induced phytohormone dynamics.
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Affiliation(s)
- Shuxing Zhou
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.
| | - Mengting Chen
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.
| | - Yuebai Zhang
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.
| | - Qing Gao
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.
| | - Ali Noman
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.
- Department of Botany, Government college university, Faisalabad 38040, Pakistan.
| | - Qi Wang
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.
| | - Heng Li
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.
| | - Lin Chen
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.
| | - Pengyong Zhou
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.
| | - Jing Lu
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.
| | - Yonggen Lou
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China.
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11
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Gupta MK, Vadde R, Gouda G, Donde R, Kumar J, Behera L. Computational approach to understand molecular mechanism involved in BPH resistance in Bt- rice plant. J Mol Graph Model 2019; 88:209-220. [PMID: 30743158 DOI: 10.1016/j.jmgm.2019.01.018] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2018] [Revised: 01/05/2019] [Accepted: 01/30/2019] [Indexed: 12/13/2022]
Abstract
In silico approach was utilised to identify differentially expressed key hub genes during BPH infestation on Bt rice plant, under laboratory conditions. Re-analysis of GSE74745 data with in-house R scripts and STRING database reveals that only 5 key hub genes, namely Os05g0176100, Os06g0683200, Os07g0208500, Os07g0252400 and Os07g0424400, belonging to cellulose synthase family, are differentially expressed and have confidence score ≥0.9 among themselves. Conserve domain analysis of all proteins encoded via these 5 key hub genes reveals that they have a common cellulose synthase domain, in which "Plant-Conserved Region" (PCR) is highly conserved. After binding with other domains of cellulose synthase proteins or other accessory proteins, like sucrose synthase, PCR serves as a metabolic channel to deliver UDP-Glucose, which is the main substrate for cellulose synthesis, into the active site of cellulose synthase and initiate cellulose synthesis. Simulation study of recently solved topological model of PCR [PDB ID: 5JNP] and molecular docking studies of PCR with UDP-glucose reveals that, during BPH infestation, in nearby phloem tissue where BPH suck sap, there is an increase interaction of UDP-glucose with PCR and other accessory proteins which in turn increases both the stability of PCR and the production of cellulose, finally causing callose deposition at that site and hence causing longer nymphal developmental period and lower fertility of BPH infested on Bt rice. In near future, these differentially identified 5 hub genes could be possible targets for controlling BPH infestation in rice plant under field conditions and increasing rice yield globally.
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Affiliation(s)
- Manoj Kumar Gupta
- Department of Biotechnology & Bioinformatics, Yogi Vemana University, Kadapa, 516003, Andhra Pradesh, India
| | - Ramakrishna Vadde
- Department of Biotechnology & Bioinformatics, Yogi Vemana University, Kadapa, 516003, Andhra Pradesh, India
| | - Gayatri Gouda
- ICAR-National Rice Research Institute, Cuttack, Odisha, 753 006, India
| | - Ravindra Donde
- ICAR-National Rice Research Institute, Cuttack, Odisha, 753 006, India
| | - Jitendra Kumar
- ICAR-National Rice Research Institute, Cuttack, Odisha, 753 006, India
| | - Lambodar Behera
- ICAR-National Rice Research Institute, Cuttack, Odisha, 753 006, India.
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12
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Pan G, Liu Y, Ji L, Zhang X, He J, Huang J, Qiu Z, Liu D, Sun Z, Xu T, Liu L, Wang C, Jiang L, Cheng X, Wan J. Brassinosteroids mediate susceptibility to brown planthopper by integrating with the salicylic acid and jasmonic acid pathways in rice. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:4433-4442. [PMID: 29893903 PMCID: PMC6093477 DOI: 10.1093/jxb/ery223] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2018] [Accepted: 06/08/2018] [Indexed: 05/03/2023]
Abstract
Improved knowledge of the interactions between plants and insects will facilitate better insect control in crops. Brassinosteroids (BRs) play a vital role in plant growth, developmental processes, and responses to pathogen infection, but the role of BRs in interactions between plants and insects remain largely unknown. In this study, we characterized a negative role of BRs in rice defense against brown planthopper (BPH, Nilaparvata lugens) and examined its underlying mechanisms. We found that BPH infestation suppressed the BR pathway while successively activating the salicylic acid (SA) and jasmonic acid (JA) pathways. In addition, BR-overproducing mutants and plants treated with 24-epibrassinolide (BL) showed increased susceptibility to BPH, whereas BR-deficient mutants were more resistant than the wild-type. BRs down-regulated the expression of genes related to the SA pathway and reduced SA content while genes related to the JA pathway were up-regulated and JA content increased after BPH infestation. Furthermore, BR-mediated suppression of the SA pathway was impaired both in JA-deficient and JA-insensitive mutants. Our results demonstrate that BRs promote the susceptibility of rice plants to BPH by modulating the SA and JA pathways.
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Affiliation(s)
- Gen Pan
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Yuqiang Liu
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Linshan Ji
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Xiao Zhang
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Jun He
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Jie Huang
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Zeyu Qiu
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Daoming Liu
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Zhiguang Sun
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Tingting Xu
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Linglong Liu
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Chunming Wang
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Ling Jiang
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Xianian Cheng
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
| | - Jianmin Wan
- State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang, Nanjing, China
- Institute of Crop Science, the National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing, China
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13
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Sperotto RA, Buffon G, Schwambach J, Ricachenevsky FK. Checkmite!? Is the Resistance to Phytophagous Mites on Short and Stocky Wild Oryza Species? FRONTIERS IN PLANT SCIENCE 2018; 9:321. [PMID: 29593771 PMCID: PMC5859031 DOI: 10.3389/fpls.2018.00321] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Accepted: 02/27/2018] [Indexed: 05/03/2023]
Affiliation(s)
- Raul A. Sperotto
- Graduate Program in Biotechnology, University of Taquari Valley, Univates, Lajeado, Brazil
- Biological Sciences and Health Center, University of Taquari Valley, Univates, Lajeado, Brazil
- *Correspondence: Raul A. Sperotto
| | - Giseli Buffon
- Graduate Program in Biotechnology, University of Taquari Valley, Univates, Lajeado, Brazil
| | - Joséli Schwambach
- Graduate Program in Biotechnology, University of Caxias do Sul, Caxias do Sul, Brazil
| | - Felipe K. Ricachenevsky
- Graduate Program in Agrobiology, Federal University of Santa Maria, Santa Maria, Brazil
- Graduate Program in Cell and Molecular Biology, Federal University of Rio Grande do Sul, Porto Alegre, Brazil
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14
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Li C, Luo C, Zhou Z, Wang R, Ling F, Xiao L, Lin Y, Chen H. Gene expression and plant hormone levels in two contrasting rice genotypes responding to brown planthopper infestation. BMC PLANT BIOLOGY 2017; 17:57. [PMID: 28245796 PMCID: PMC5331639 DOI: 10.1186/s12870-017-1005-7] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2016] [Accepted: 02/23/2017] [Indexed: 05/13/2023]
Abstract
BACKGROUND The brown planthopper (BPH; Nilaparvata lugens Stål) is a destructive piercing-sucking insect pest of rice. The plant hormones salicylic acid (SA) and jasmonic acid (JA) play important roles in plant-pest interactions. Many isolated rice genes that modulate BPH resistance are involved in the metabolism or signaling pathways of SA, JA and ethylene. 'Rathu Heenati' (RH) is a rice cultivar with a high-level, broad-spectrum resistance to all BPH biotypes. Here, RH was used as the research material, while a BPH-susceptible rice cultivar 'Taichung Native 1' (TN1) was the control. A cDNA microarray analysis illuminated the resistance response at the genome level of RH under BPH infestation. The levels of SA and JA in RH and TN1 seedlings after BPH infestation were also determined. RESULTS The expression pattern clustering indicated that 1467 differential probe sets may be associated with constitutive resistance and 67 with the BPH infestation-responsive resistance of RH. A Venn diagram analysis revealed 192 RH-specific and BPH-inducible probe sets. Finally, 23 BPH resistance-related gene candidates were selected based on the expression pattern clustering and Venn diagram analysis. In RH, the SA content significantly increased and the JA content significantly decreased after BPH infestation, with the former occurring prior to the latter. In RH, the differential genes in the SA pathway were synthesis-related and were up-regulated after BPH infestation. The differential genes in the JA pathway were also up-regulated. They were jasmonate ZIM-domain transcription factors, which are important negative regulators of the JA pathway. Comparatively, genes involved in the ET pathway were less affected by a BPH infestation in RH. DNA sequence analysis revealed that most BPH infestation-inducible genes may be regulated by the genetic background in a trans-acting manner, instead of by their promoters. CONCLUSIONS We profiled the analysis of the global gene expression in RH and TN1 under BPH infestation, together with changes in the SA and JA levels. SA plays a leading role in the resistance response of rice to BPH. Our results will aid in understanding the molecular basis of RH's BPH resistance and facilitate the identification of new resistance-related genes for breeding BPH-resistant rice varieties.
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Affiliation(s)
- Changyan Li
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070 China
| | - Chao Luo
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070 China
| | - Zaihui Zhou
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070 China
| | - Rui Wang
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070 China
| | - Fei Ling
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070 China
| | - Langtao Xiao
- Hunan Provincial Key Laboratory of Phytohormones and Growth Development, Hunan Agricultural University, Changsha, 410128 China
| | - Yongjun Lin
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070 China
| | - Hao Chen
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070 China
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15
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Liu Q, Wang X, Tzin V, Romeis J, Peng Y, Li Y. Combined transcriptome and metabolome analyses to understand the dynamic responses of rice plants to attack by the rice stem borer Chilo suppressalis (Lepidoptera: Crambidae). BMC PLANT BIOLOGY 2016; 16:259. [PMID: 27923345 PMCID: PMC5142284 DOI: 10.1186/s12870-016-0946-6] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Accepted: 11/23/2016] [Indexed: 05/19/2023]
Abstract
BACKGROUND Rice (Oryza sativa L.), which is a staple food for more than half of the world's population, is frequently attacked by herbivorous insects, including the rice stem borer, Chilo suppressalis. C. suppressalis substantially reduces rice yields in temperate regions of Asia, but little is known about how rice plants defend themselves against this herbivore at molecular and biochemical level. RESULTS In the current study, we combined next-generation RNA sequencing and metabolomics techniques to investigate the changes in gene expression and in metabolic processes in rice plants that had been continuously fed by C. suppressalis larvae for different durations (0, 24, 48, 72, and 96 h). Furthermore, the data were validated using quantitative real-time PCR. There were 4,729 genes and 151 metabolites differently regulated when rice plants were damaged by C. suppressalis larvae. Further analyses showed that defense-related phytohormones, transcript factors, shikimate-mediated and terpenoid-related secondary metabolism were activated, whereas the growth-related counterparts were suppressed by C. suppressalis feeding. The activated defense was fueled by catabolism of energy storage compounds such as monosaccharides, which meanwhile resulted in the increased levels of metabolites that were involved in rice plant defense response. Comparable analyses showed a correspondence between transcript patterns and metabolite profiles. CONCLUSION The current findings greatly enhance our understanding of the mechanisms of induced defense response in rice plants against C. suppressalis infestation at molecular and biochemical levels, and will provide clues for development of insect-resistant rice varieties.
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Affiliation(s)
- Qingsong Liu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Xingyun Wang
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Vered Tzin
- The French Associates Institute for Agriculture and Biotechnology of Drylands, The Jacob Blaustein Institute for Desert Research, Ben-Gurion University of the Negev, Sede Boqer, Israel
| | - Jörg Romeis
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
- Agroscope, Biosafety Research Group, Zurich, Switzerland
| | - Yufa Peng
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Yunhe Li
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
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