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Bergman ME, Kortbeek RWJ, Gutensohn M, Dudareva N. Plant terpenoid biosynthetic network and its multiple layers of regulation. Prog Lipid Res 2024; 95:101287. [PMID: 38906423 DOI: 10.1016/j.plipres.2024.101287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Revised: 06/13/2024] [Accepted: 06/17/2024] [Indexed: 06/23/2024]
Abstract
Terpenoids constitute one of the largest and most chemically diverse classes of primary and secondary metabolites in nature with an exceptional breadth of functional roles in plants. Biosynthesis of all terpenoids begins with the universal five‑carbon building blocks, isopentenyl diphosphate (IPP) and its allylic isomer dimethylallyl diphosphate (DMAPP), which in plants are derived from two compartmentally separated but metabolically crosstalking routes, the mevalonic acid (MVA) and methylerythritol phosphate (MEP) pathways. Here, we review the current knowledge on the terpenoid precursor pathways and highlight the critical hidden constraints as well as multiple regulatory mechanisms that coordinate and homeostatically govern carbon flux through the terpenoid biosynthetic network in plants.
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Affiliation(s)
- Matthew E Bergman
- Department of Biochemistry, Purdue University, West Lafayette, IN, United States; Purdue Center for Plant Biology, Purdue University, West Lafayette, IN, United States
| | - Ruy W J Kortbeek
- Department of Biochemistry, Purdue University, West Lafayette, IN, United States; Purdue Center for Plant Biology, Purdue University, West Lafayette, IN, United States
| | - Michael Gutensohn
- Division of Plant and Soil Sciences, West Virginia University, Morgantown, WV, United States
| | - Natalia Dudareva
- Department of Biochemistry, Purdue University, West Lafayette, IN, United States; Purdue Center for Plant Biology, Purdue University, West Lafayette, IN, United States; Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN, United States.
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Han T, Shao Y, Gao R, Gao J, Jiang Y, Yang Y, Wang Y, Yang S, Gao X, Wang L, Li Y. Functional Characterization of a ( E)-β-Ocimene Synthase Gene Contributing to the Defense against Spodoptera litura. Int J Mol Sci 2023; 24:ijms24087182. [PMID: 37108345 PMCID: PMC10139113 DOI: 10.3390/ijms24087182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 04/03/2023] [Accepted: 04/11/2023] [Indexed: 04/29/2023] Open
Abstract
Soybean is a worldwide crop that offers valuable proteins, fatty acids, and phytonutrients to humans but is always damaged by insect pests or pathogens. Plants have captured sophisticated defense mechanisms in resisting the attack of insects and pathogens. How to protect soybean in an environment- or human-friendly way or how to develop plant-based pest control is a hotpot. Herbivore-induced plant volatiles that are released by multiple plant species have been assessed in multi-systems against various insects, of which (E)-β-ocimene has been reported to show anti-insect function in a variety of plants, including soybean. However, the responsible gene in soybean is unknown, and its mechanism of synthesis and anti-insect properties lacks comprehensive assessment. In this study, (E)-β-ocimene was confirmed to be induced by Spodoptera litura treatment. A plastidic localized monoterpene synthase gene, designated as GmOCS, was identified to be responsible for the biosynthesis of (E)-β-ocimene through genome-wide gene family screening and in vitro and in vivo assays. Results from transgenic soybean and tobacco confirmed that (E)-β-ocimene catalyzed by GmOCS had pivotal roles in repelling a S. litura attack. This study advances the understanding of (E)-β-ocimene synthesis and its function in crops, as well as provides a good candidate for further anti-insect soybean improvement.
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Affiliation(s)
- Taotao Han
- Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China
| | - Yan Shao
- Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China
| | - Ruifang Gao
- College of Plant Science, Jilin University, Changchun 130024, China
| | - Jinshan Gao
- Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Yu Jiang
- Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China
- Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Yue Yang
- Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China
- Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Yanan Wang
- Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China
| | - Siqi Yang
- Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China
| | - Xiang Gao
- Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China
| | - Li Wang
- Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China
| | - Yueqing Li
- Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China
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Huang Y, Xie FJ, Cao X, Li MY. Research progress in biosynthesis and regulation of plant terpenoids. BIOTECHNOL BIOTEC EQ 2022. [DOI: 10.1080/13102818.2021.2020162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
Affiliation(s)
- Ying Huang
- Department of Horticulture, College of Agriculture and Forestry Sciences, Linyi University, Linyi, Shandong, PR China
| | - Fang-Jie Xie
- Department of Horticulture, College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, PR China
| | - Xue Cao
- Department of Horticulture, College of Agriculture and Forestry Sciences, Linyi University, Linyi, Shandong, PR China
| | - Meng-Yao Li
- Department of Horticulture, College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, PR China
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Ramos YJ, da Costa-Oliveira C, Candido-Fonseca I, de Queiroz GA, Guimarães EF, Defaveri ACAE, Sadgrove NJ, Moreira DDL. Advanced Chemophenetic Analysis of Essential Oil from Leaves of Piper gaudichaudianum Kunth (Piperaceae) Using a New Reduction-Oxidation Index to Explore Seasonal and Circadian Rhythms. PLANTS 2021; 10:plants10102116. [PMID: 34685925 PMCID: PMC8540104 DOI: 10.3390/plants10102116] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 09/26/2021] [Accepted: 09/28/2021] [Indexed: 11/16/2022]
Abstract
The aromatic species Piper gaudichaudianum Kunth (Piperaceae) is widely used in Brazil for medicinal and ritualistic applications. In the current study, chemophenetic patterns were realized across season and circadian rhythm based on the chemical profile of essential oils (EOs) from leaves. Hydrodistilled essential oils were analyzed by GC-MS and GC-FID, and a new calculation of metabolite oxidation level, averaged for each individual molecule component of the EO, was used to explore the patterns of metabolism/biosynthesis. This new index used an intermediate calculation, the 'weighted average redox standard' (SRO), to enable a value for mixtures of metabolites to be generated, the 'general mixture redox index' (GMOR). The indices were subjected to a proof-of-concept approach by making comparison to outcomes from multivariate analyses, i.e., PCA and HCA. Chemical analysis demonstrated that the essential oils were dominated by sesquiterpenes, constructed of 15 classes of compound (C-skeletons), and 4 C-skeletons were recognized in the monoterpene group, giving a total of 19. The variation of chemical profiles was distinct at different phenological stages, but stronger chemical variation was evident between day and night as compared to season. Furthermore, due to comprehensive sampling across different regions, nine chemotypes were recognized, including those previously reported. The SRO and GMRO indices demonstrate that phenological variation of chemistry is mainly an outcome of redox fluctuations in terpene biosynthesis, changing from day to night. These indices also corroborate that chemical diversity is increased with oxidative metabolism. Lastly, the current study demonstrates pronounced phenotypic plasticity in P. gaudichaudianum, which makes it a suitable candidate to help further our understanding of chemophenetics and chemical ecology.
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Affiliation(s)
- Ygor Jessé Ramos
- Instituto de Biologia, Pós-Graduação em Biologia Vegetal, Universidade do Estado do Rio de Janeiro, Maracanã, Rio de Janeiro 20550-013, Brazil;
- Diretoria de Pesquisa do Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Jardim Botânico, Rio de Janeiro 22460-030, Brazil;
- Centro de Responsabilidade Socioambiental do Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Jardim Botânico, Rio de Janeiro 22460-030, Brazil; (G.A.d.Q.); (A.C.A.e.D.)
- Fundação Oswaldo Cruz, Farmanguinhos, Manguinhos, Rio de Janeiro 21041-250, Brazil; (C.d.C.-O.); (I.C.-F.)
| | - Claudete da Costa-Oliveira
- Fundação Oswaldo Cruz, Farmanguinhos, Manguinhos, Rio de Janeiro 21041-250, Brazil; (C.d.C.-O.); (I.C.-F.)
| | - Irene Candido-Fonseca
- Fundação Oswaldo Cruz, Farmanguinhos, Manguinhos, Rio de Janeiro 21041-250, Brazil; (C.d.C.-O.); (I.C.-F.)
| | - George Azevedo de Queiroz
- Centro de Responsabilidade Socioambiental do Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Jardim Botânico, Rio de Janeiro 22460-030, Brazil; (G.A.d.Q.); (A.C.A.e.D.)
| | - Elsie Franklin Guimarães
- Diretoria de Pesquisa do Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Jardim Botânico, Rio de Janeiro 22460-030, Brazil;
| | - Anna C. Antunes e Defaveri
- Centro de Responsabilidade Socioambiental do Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Jardim Botânico, Rio de Janeiro 22460-030, Brazil; (G.A.d.Q.); (A.C.A.e.D.)
| | | | - Davyson de Lima Moreira
- Instituto de Biologia, Pós-Graduação em Biologia Vegetal, Universidade do Estado do Rio de Janeiro, Maracanã, Rio de Janeiro 20550-013, Brazil;
- Diretoria de Pesquisa do Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Jardim Botânico, Rio de Janeiro 22460-030, Brazil;
- Fundação Oswaldo Cruz, Farmanguinhos, Manguinhos, Rio de Janeiro 21041-250, Brazil; (C.d.C.-O.); (I.C.-F.)
- Correspondence:
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Pu X, Dong X, Li Q, Chen Z, Liu L. An update on the function and regulation of methylerythritol phosphate and mevalonate pathways and their evolutionary dynamics. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2021; 63:1211-1226. [PMID: 33538411 DOI: 10.1111/jipb.13076] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Accepted: 02/02/2021] [Indexed: 05/29/2023]
Abstract
Isoprenoids are among the largest and most chemically diverse classes of organic compounds in nature and are involved in the processes of photosynthesis, respiration, growth, development, and plant responses to stress. The basic building block units for isoprenoid synthesis-isopentenyl diphosphate and its isomer dimethylallyl diphosphate-are generated by the mevalonate (MVA) and methylerythritol phosphate (MEP) pathways. Here, we summarize recent advances on the roles of the MEP and MVA pathways in plant growth, development and stress responses, and attempt to define the underlying gene networks that orchestrate the MEP and MVA pathways in response to developmental or environmental cues. Through phylogenomic analysis, we also provide a new perspective on the evolution of the plant isoprenoid pathway. We conclude that the presence of the MVA pathway in plants may be associated with the transition from aquatic to subaerial and terrestrial environments, as lineages for its core components are absent in green algae. The emergence of the MVA pathway has acted as a key evolutionary event in plants that facilitated land colonization and subsequent embryo development, as well as adaptation to new and varied environments.
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Affiliation(s)
- Xiaojun Pu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, 434200, China
- Key Laboratory for Economic Plants and Biotechnology, Kunming Institute of Botany, the Chinese Academy of Sciences, and Yunnan Key Laboratory for Wild Plant Resources, Kunming, 650201, China
| | - Xiumei Dong
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, 434200, China
- Key Laboratory for Economic Plants and Biotechnology, Kunming Institute of Botany, the Chinese Academy of Sciences, and Yunnan Key Laboratory for Wild Plant Resources, Kunming, 650201, China
| | - Qing Li
- Key Laboratory for Economic Plants and Biotechnology, Kunming Institute of Botany, the Chinese Academy of Sciences, and Yunnan Key Laboratory for Wild Plant Resources, Kunming, 650201, China
- School of Life Sciences, Yunnan University, Kunming, 650091, China
| | - Zexi Chen
- Key Laboratory for Economic Plants and Biotechnology, Kunming Institute of Botany, the Chinese Academy of Sciences, and Yunnan Key Laboratory for Wild Plant Resources, Kunming, 650201, China
- University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Li Liu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, 434200, China
- Key Laboratory for Economic Plants and Biotechnology, Kunming Institute of Botany, the Chinese Academy of Sciences, and Yunnan Key Laboratory for Wild Plant Resources, Kunming, 650201, China
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Ashaari NS, Ab. Rahim MH, Sabri S, Lai KS, Song AAL, Abdul Rahim R, Wan Abdullah WMAN, Ong Abdullah J. Functional characterization of a new terpene synthase from Plectranthus amboinicus. PLoS One 2020; 15:e0235416. [PMID: 32614884 PMCID: PMC7332032 DOI: 10.1371/journal.pone.0235416] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Accepted: 06/15/2020] [Indexed: 12/21/2022] Open
Abstract
Plectranthus amboinicus (Lour.) Spreng is an aromatic medicinal herb known for its therapeutic and nutritional properties attributed by the presence of monoterpene and sesquiterpene compounds. Up until now, research on terpenoid biosynthesis has focused on a few mint species with economic importance such as thyme and oregano, yet the terpene synthases responsible for monoterpene production in P. amboinicus have not been described. Here we report the isolation, heterologous expression and functional characterization of a terpene synthase involved in P. amboinicus terpenoid biosynthesis. A putative monoterpene synthase gene (PamTps1) from P. amboinicus was isolated with an open reading frame of 1797 bp encoding a predicted protein of 598 amino acids with molecular weight of 69.6 kDa. PamTps1 shares 60–70% amino acid sequence similarity with other known terpene synthases of Lamiaceae. The in vitro enzymatic activity of PamTps1 demonstrated the conversion of geranyl pyrophosphate and farnesyl pyrophosphate exclusively into linalool and nerolidol, respectively, and thus PamTps1 was classified as a linalool/nerolidol synthase. In vivo activity of PamTps1 in a recombinant Escherichia coli strain revealed production of linalool and nerolidol which correlated with its in vitro activity. This outcome validated the multi-substrate usage of this enzyme in producing linalool and nerolidol both in in vivo and in vitro systems. The transcript level of PamTps1 was prominent in the leaf during daytime as compared to the stem. Gas chromatography-mass spectrometry (GC-MS) and quantitative real-time PCR analyses showed that maximal linalool level was released during the daytime and lower at night following a diurnal circadian pattern which correlated with the PamTps1 expression pattern. The PamTps1 cloned herein provides a molecular basis for the terpenoid biosynthesis in this local herb that could be exploited for valuable production using metabolic engineering in both microbial and plant systems.
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Affiliation(s)
- Nur Suhanawati Ashaari
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Selangor, Malaysia
| | - Mohd Hairul Ab. Rahim
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Selangor, Malaysia
| | - Suriana Sabri
- Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Selangor, Malaysia
| | - Kok Song Lai
- Health Sciences Division, Abu Dhabi Women’s College, Higher Colleges of Technology, Abu Dhabi, United Arab of Emirates
| | - Adelene Ai-Lian Song
- Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Selangor, Malaysia
| | - Raha Abdul Rahim
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Selangor, Malaysia
| | | | - Janna Ong Abdullah
- Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Selangor, Malaysia
- * E-mail:
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Zheng R, Zhu Z, Wang Y, Hu S, Xi W, Xiao W, Qu X, Zhong L, Fu Q, Wang C. UGT85A84 Catalyzes the Glycosylation of Aromatic Monoterpenes in Osmanthus fragrans Lour. Flowers. FRONTIERS IN PLANT SCIENCE 2019; 10:1376. [PMID: 31849999 PMCID: PMC6902048 DOI: 10.3389/fpls.2019.01376] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Accepted: 10/07/2019] [Indexed: 06/10/2023]
Abstract
The monoterpenes linalool and its oxides are the key aroma-active compounds in Osmanthus fragrans Lour. flowers. The glycosides of these monoterpenes accumulate throughout flowering, leading to considerable storage of potential aroma constituents that account for the majority of non-volatile aroma compounds. However, the UDP-glycosyltransferase (UGT) responsible for the glycosylation of linalool and its oxides has not been clarified. Four candidate OfUGTs (UGT85A82, UGT85A83, UGT85AF3, and UGT85A84) with high homology to the known terpenoid UGTs were screened by transcriptome sequencing. Over-expression of the candidate OfUGTs in tobacco showed that UGT85A84 glycosylated linalool oxides in planta. Since the transcript levels of UGT85A84 were positively correlated with glycoside accumulation, the recombinant UGT85A84 protein was subjected to reactions with aglycones and sugar donors. Two formate adducts were exclusively detected in UDP-Glc with linalool and linalool oxide reactions by liquid chromatography-mass spectrometry (LC-MS), indicating that UDP-Glc was the specific sugar donor. The kinetic parameters demonstrated that UGT85A84 glycosylated both linalool and lianlool oxides in vitro. Further analysis demonstrated that the transcription levels of MEP pathway genes might play an important role in mediating terpenoid glycosylation. Our findings unraveled the mechanism underlying the glycosylation of essential aroma compounds in flowers. This study will facilitate the application of potential aroma contributors in future industries.
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Affiliation(s)
- Riru Zheng
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture, Wuhan, China
| | - Zhenyin Zhu
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture, Wuhan, China
| | - Yanli Wang
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture, Wuhan, China
| | - Shiyang Hu
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture, Wuhan, China
| | - Wan Xi
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture, Wuhan, China
| | - Wei Xiao
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture, Wuhan, China
| | - Xiaolu Qu
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture, Wuhan, China
| | - Linlin Zhong
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture, Wuhan, China
| | - Qiang Fu
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture, Wuhan, China
| | - Caiyun Wang
- Key Laboratory for Biology of Horticultural Plants, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
- Key Laboratory of Urban Agriculture in Central China, Ministry of Agriculture, Wuhan, China
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Ramya M, Park PH, Chuang YC, Kwon OK, An HR, Park PM, Baek YS, Kang BC, Tsai WC, Chen HH. RNA sequencing analysis of Cymbidium goeringii identifies floral scent biosynthesis related genes. BMC PLANT BIOLOGY 2019; 19:337. [PMID: 31375064 PMCID: PMC6679452 DOI: 10.1186/s12870-019-1940-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2019] [Accepted: 07/17/2019] [Indexed: 05/21/2023]
Abstract
BACKGROUND Cymbidium goeringii belongs to the Orchidaceae, which is one of the most abundant angiosperm families. Cymbidium goeringii consist with high economic value and characteristics include fragrance and multiple flower colors. Floral scent is one of the important strategies for ensuring fertilization. However, limited genetic data is available in this non-model plant, and little known about the molecular mechanism responsible for floral scent in this orchid. Transcriptome and expression profiling data are needed to identify genes and better understand the biological mechanisms of floral scents in this species. Present transcriptomic data provides basic information on the genes and enzymes related to and pathways involved in flower secondary metabolism in this plant. RESULTS In this study, RNA sequencing analyses were performed to identify changes in gene expression and biological pathways related scent metabolism. Three cDNA libraries were obtained from three developmental floral stages: closed bud, half flowering stage and full flowering stage. Using Illumina technique 159,616,374 clean reads were obtained and were assembled into 85,868 final unigenes (average length 1194 nt), 33.85% of which were annotated in the NCBI non redundant protein database. Among this unigenes 36,082 were assigned to gene ontology and 23,164 were combined with COG groups. Total 33,417 unigenes were assigned in 127 pathways according to the Kyoto Encyclopedia of Genes and Genomes pathway database. According these transcriptomic data we identified number of candidates genes which differentially expressed in different developmental stages of flower related to fragrance biosynthesis. In q-RT-PCR most of the fragrance related genes highly expressed in half flowering stage. CONCLUSIONS RNA-seq and DEG data provided comprehensive gene expression information at the transcriptional level that could be facilitate the molecular mechanisms of floral biosynthesis pathways in three developmental phase's flowers in Cymbidium goeringii, moreover providing useful information for further analysis on C. goeringii, and other plants of genus Cymbidium.
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Affiliation(s)
- Mummadireddy Ramya
- Floriculture Research Division, National Institute of Horticultural & Herbal Science (NIHHS), Rural Development Administration (RDA), Wanju, 55365 South Korea
| | - Pue Hee Park
- Floriculture Research Division, National Institute of Horticultural & Herbal Science (NIHHS), Rural Development Administration (RDA), Wanju, 55365 South Korea
- Department of Life Sciences, National Cheng Kung University (NCKU), Tainan, 701 Taiwan
- Department of Horticultural Science and Biotechnology, Seoul National University (SNU), Seoul, 08826 South Korea
| | - Yu-Chen Chuang
- Department of Life Sciences, National Cheng Kung University (NCKU), Tainan, 701 Taiwan
| | - Oh Keun Kwon
- Floriculture Research Division, National Institute of Horticultural & Herbal Science (NIHHS), Rural Development Administration (RDA), Wanju, 55365 South Korea
| | - Hye Ryun An
- Floriculture Research Division, National Institute of Horticultural & Herbal Science (NIHHS), Rural Development Administration (RDA), Wanju, 55365 South Korea
| | - Pil Man Park
- Floriculture Research Division, National Institute of Horticultural & Herbal Science (NIHHS), Rural Development Administration (RDA), Wanju, 55365 South Korea
| | - Yun Su Baek
- Floriculture Research Division, National Institute of Horticultural & Herbal Science (NIHHS), Rural Development Administration (RDA), Wanju, 55365 South Korea
| | - Byoung-Chorl Kang
- Department of Horticultural Science and Biotechnology, Seoul National University (SNU), Seoul, 08826 South Korea
| | - Wen-Chieh Tsai
- Department of Life Sciences, National Cheng Kung University (NCKU), Tainan, 701 Taiwan
- Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan, 701 Taiwan
- Orchid Research and Development Center, National Cheng Kung University, Tainan, 701 Taiwan
| | - Hong-Hwa Chen
- Department of Life Sciences, National Cheng Kung University (NCKU), Tainan, 701 Taiwan
- Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan, 701 Taiwan
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