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For: Saminathan T, García M, Ghimire B, Lopez C, Bodunrin A, Nimmakayala P, Abburi VL, Levi A, Balagurusamy N, Reddy UK. Metagenomic and Metatranscriptomic Analyses of Diverse Watermelon Cultivars Reveal the Role of Fruit Associated Microbiome in Carbohydrate Metabolism and Ripening of Mature Fruits. Front Plant Sci 2018;9:4. [PMID: 29403516 PMCID: PMC5780703 DOI: 10.3389/fpls.2018.00004] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2017] [Accepted: 01/03/2018] [Indexed: 05/06/2023]
Number Cited by Other Article(s)
1
Zhao L, Li H, Liu Z, Hu L, Xu D, Zhu X, Mo H. Quality Changes and Fungal Microbiota Dynamics in Stored Jujube Fruits: Insights from High-Throughput Sequencing for Food Preservation. Foods 2024;13:1473. [PMID: 38790773 PMCID: PMC11120314 DOI: 10.3390/foods13101473] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2024] [Revised: 05/06/2024] [Accepted: 05/08/2024] [Indexed: 05/26/2024]  Open
2
Goforth M, Obergh V, Park R, Porchas M, Crosby KM, Jifon JL, Ravishankar S, Brierley P, Leskovar DL, Turini TA, Schultheis J, Coolong T, Miller R, Koiwa H, Patil BS, Cooper MA, Huynh S, Parker CT, Guan W, Cooper KK. Bacterial diversity and composition on the rinds of specific melon cultivars and hybrids from across different growing regions in the United States. PLoS One 2024;19:e0293861. [PMID: 38603714 PMCID: PMC11008840 DOI: 10.1371/journal.pone.0293861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Accepted: 02/03/2024] [Indexed: 04/13/2024]  Open
3
Angamarca E, Castillejo P, Tenea GN. Microbiota and its antibiotic resistance profile in avocado Guatemalan fruits (Persea nubigena var. guatemalensis) sold at retail markets of Ibarra city, northern Ecuador. Front Microbiol 2023;14:1228079. [PMID: 37744909 PMCID: PMC10513466 DOI: 10.3389/fmicb.2023.1228079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 08/11/2023] [Indexed: 09/26/2023]  Open
4
Wang W, He L, Zhang Z, Li W, Chen J, Chen T, Long Y. Activity of the botanical compound thymol against kiwifruit rot caused by Fusarium tricinctum and the underlying mechanisms. PEST MANAGEMENT SCIENCE 2023;79:2493-2502. [PMID: 36864770 DOI: 10.1002/ps.7431] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 01/18/2023] [Accepted: 02/02/2023] [Indexed: 06/02/2023]
5
Wang C, Zhao Z, Lu S, Liu Y, Han S, Jiang H, Yang Y, Liu H. Physiological, Nutritional and Transcriptomic Responses of Sturgeon (Acipenser schrenckii) to Complete Substitution of Fishmeal with Cottonseed Protein Concentrate in Aquafeed. BIOLOGY 2023;12:biology12040490. [PMID: 37106691 PMCID: PMC10135981 DOI: 10.3390/biology12040490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 03/20/2023] [Accepted: 03/22/2023] [Indexed: 04/29/2023]
6
Wang C, Zhou J, Zhang S, Gao X, Yang Y, Hou J, Chen G, Tang X, Wu J, Yuan L. Combined Metabolome and Transcriptome Analysis Elucidates Sugar Accumulation in Wucai (Brassica campestris L.). Int J Mol Sci 2023;24:ijms24054816. [PMID: 36902245 PMCID: PMC10003340 DOI: 10.3390/ijms24054816] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 02/18/2023] [Accepted: 02/23/2023] [Indexed: 03/06/2023]  Open
7
Yuan P, Xu C, He N, Lu X, Zhang X, Shang J, Zhu H, Gong C, Kuang H, Tang T, Xu Y, Ma S, Sun D, Zhang W, Umer MJ, Shi J, Fernie AR, Liu W, Luo J. Watermelon domestication was shaped by stepwise selection and regulation of the metabolome. SCIENCE CHINA. LIFE SCIENCES 2023;66:579-594. [PMID: 36346547 DOI: 10.1007/s11427-022-2198-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2022] [Accepted: 09/16/2022] [Indexed: 11/11/2022]
8
Reyes BMD, Fonseca PLC, Heming NM, Conceição LBDA, Nascimento KTDS, Gramacho KP, Arevalo-Gardini E, Pirovani CP, Aguiar ERGR. Characterization of the microbiota dynamics associated with Moniliophthora roreri, causal agent of cocoa frosty pod rot disease, reveals new viral species. Front Microbiol 2023;13:1053562. [PMID: 36817107 PMCID: PMC9936985 DOI: 10.3389/fmicb.2022.1053562] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2022] [Accepted: 12/23/2022] [Indexed: 02/05/2023]  Open
9
Microbiome-based biotechnology for reducing food loss post harvest. Curr Opin Biotechnol 2022;78:102808. [PMID: 36183451 DOI: 10.1016/j.copbio.2022.102808] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2022] [Revised: 08/21/2022] [Accepted: 08/29/2022] [Indexed: 12/14/2022]
10
Bhatt K, Suyal DC, Kumar S, Singh K, Goswami P. New insights into engineered plant-microbe interactions for pesticide removal. CHEMOSPHERE 2022;309:136635. [PMID: 36183882 DOI: 10.1016/j.chemosphere.2022.136635] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 09/21/2022] [Accepted: 09/25/2022] [Indexed: 06/16/2023]
11
Zhang R, Zhang C, Yu C, Dong J, Hu J. Integration of multi-omics technologies for crop improvement: Status and prospects. FRONTIERS IN BIOINFORMATICS 2022;2:1027457. [PMID: 36438626 PMCID: PMC9689701 DOI: 10.3389/fbinf.2022.1027457] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Accepted: 09/28/2022] [Indexed: 08/03/2023]  Open
12
Debaryomyces nepalensis reduces fungal decay by affecting the postharvest microbiome during jujube storage. Int J Food Microbiol 2022;379:109866. [PMID: 35944358 DOI: 10.1016/j.ijfoodmicro.2022.109866] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 07/18/2022] [Accepted: 07/28/2022] [Indexed: 11/22/2022]
13
Lastochkina O, Aliniaeifard S, SeifiKalhor M, Bosacchi M, Maslennikova D, Lubyanova A. Novel Approaches for Sustainable Horticultural Crop Production: Advances and Prospects. HORTICULTURAE 2022;8:910. [DOI: 10.3390/horticulturae8100910] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/23/2023]
14
Cai J, Lu W, kan Q, Chen X, Cao Y, Xiao J. Volatile composition changes of fruits in a biopolymer-coated polyethylene active packaging: Effects of modified atmosphere and packaging-shaped bacterial community. Food Res Int 2022;152:110843. [DOI: 10.1016/j.foodres.2021.110843] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 10/29/2021] [Accepted: 11/27/2021] [Indexed: 12/19/2022]
15
de Medeiros Azevedo T, Aburjaile FF, Ferreira-Neto JRC, Pandolfi V, Benko-Iseppon AM. The endophytome (plant-associated microbiome): methodological approaches, biological aspects, and biotech applications. World J Microbiol Biotechnol 2021;37:206. [PMID: 34708327 DOI: 10.1007/s11274-021-03168-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Accepted: 10/05/2021] [Indexed: 11/25/2022]
16
Gogolev YV, Ahmar S, Akpinar BA, Budak H, Kiryushkin AS, Gorshkov VY, Hensel G, Demchenko KN, Kovalchuk I, Mora-Poblete F, Muslu T, Tsers ID, Yadav NS, Korzun V. OMICs, Epigenetics, and Genome Editing Techniques for Food and Nutritional Security. PLANTS (BASEL, SWITZERLAND) 2021;10:1423. [PMID: 34371624 PMCID: PMC8309286 DOI: 10.3390/plants10071423] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Revised: 06/30/2021] [Accepted: 07/07/2021] [Indexed: 12/22/2022]
17
Ren Y, Li M, Guo S, Sun H, Zhao J, Zhang J, Liu G, He H, Tian S, Yu Y, Gong G, Zhang H, Zhang X, Alseekh S, Fernie AR, Scheller HV, Xu Y. Evolutionary gain of oligosaccharide hydrolysis and sugar transport enhanced carbohydrate partitioning in sweet watermelon fruits. THE PLANT CELL 2021;33:1554-1573. [PMID: 33570606 PMCID: PMC8254481 DOI: 10.1093/plcell/koab055] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Accepted: 02/06/2021] [Indexed: 05/04/2023]
18
Zhang H, Serwah Boateng NA, Ngolong Ngea GL, Shi Y, Lin H, Yang Q, Wang K, Zhang X, Zhao L, Droby S. Unravelling the fruit microbiome: The key for developing effective biological control strategies for postharvest diseases. Compr Rev Food Sci Food Saf 2021;20:4906-4930. [PMID: 34190408 DOI: 10.1111/1541-4337.12783] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Revised: 05/10/2021] [Accepted: 05/12/2021] [Indexed: 12/15/2022]
19
Manthou E, Coeuret G, Chaillou S, Nychas GJE. Evolution of fungal community associated with ready-to-eat pineapple during storage under different temperature conditions. Food Microbiol 2021;97:103736. [PMID: 33653515 DOI: 10.1016/j.fm.2021.103736] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2020] [Revised: 01/05/2021] [Accepted: 01/06/2021] [Indexed: 11/15/2022]
20
Kumar A, Zhimo Y, Biasi A, Salim S, Feygenberg O, Wisniewski M, Droby S. Endophytic Microbiome in the Carposphere and Its Importance in Fruit Physiology and Pathology. POSTHARVEST PATHOLOGY 2021. [DOI: 10.1007/978-3-030-56530-5_5] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
21
Umer MJ, Bin Safdar L, Gebremeskel H, Zhao S, Yuan P, Zhu H, Kaseb MO, Anees M, Lu X, He N, Gong C, Liu W. Identification of key gene networks controlling organic acid and sugar metabolism during watermelon fruit development by integrating metabolic phenotypes and gene expression profiles. HORTICULTURE RESEARCH 2020;7:193. [PMID: 33328462 PMCID: PMC7705761 DOI: 10.1038/s41438-020-00416-8] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2020] [Revised: 07/14/2020] [Accepted: 09/10/2020] [Indexed: 05/03/2023]
22
Kusstatscher P, Cernava T, Abdelfattah A, Gokul J, Korsten L, Berg G. Microbiome approaches provide the key to biologically control postharvest pathogens and storability of fruits and vegetables. FEMS Microbiol Ecol 2020;96:5857999. [PMID: 32542314 DOI: 10.1093/femsec/fiaa119] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Accepted: 06/14/2020] [Indexed: 01/07/2023]  Open
23
Kasote DM, Jayaprakasha GK, Ong K, Crosby KM, Patil BS. Hormonal and metabolites responses in Fusarium wilt-susceptible and -resistant watermelon plants during plant-pathogen interactions. BMC PLANT BIOLOGY 2020;20:481. [PMID: 33092532 PMCID: PMC7579875 DOI: 10.1186/s12870-020-02686-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Accepted: 10/07/2020] [Indexed: 06/11/2023]
24
Compant S, Cambon MC, Vacher C, Mitter B, Samad A, Sessitsch A. The plant endosphere world - bacterial life within plants. Environ Microbiol 2020;23:1812-1829. [PMID: 32955144 DOI: 10.1111/1462-2920.15240] [Citation(s) in RCA: 88] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Revised: 09/11/2020] [Accepted: 09/16/2020] [Indexed: 12/23/2022]
25
Hu X, Wang K, Chen M, Fan J, Han S, Hou J, Chi L, Liu Y, Wei T. Profiling the composition and metabolic activities of microbial community in fermented grain for the Chinese strong-flavor Baijiu production by using the metatranscriptome, high-throughput 16S rRNA and ITS gene sequencings. Food Res Int 2020;138:109765. [PMID: 33292946 DOI: 10.1016/j.foodres.2020.109765] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Revised: 09/25/2020] [Accepted: 09/27/2020] [Indexed: 10/23/2022]
26
Babalola OO, Fadiji AE, Enagbonma BJ, Alori ET, Ayilara MS, Ayangbenro AS. The Nexus Between Plant and Plant Microbiome: Revelation of the Networking Strategies. Front Microbiol 2020;11:548037. [PMID: 33013781 PMCID: PMC7499240 DOI: 10.3389/fmicb.2020.548037] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Accepted: 08/12/2020] [Indexed: 12/16/2022]  Open
27
Cruz Barrera M, Jakobs-Schoenwandt D, Gómez MI, Serrato J, Ruppel S, Patel AV. Formulating bacterial endophyte: Pre-conditioning of cells and the encapsulation in amidated pectin beads. ACTA ACUST UNITED AC 2020;26:e00463. [PMID: 32405468 PMCID: PMC7210509 DOI: 10.1016/j.btre.2020.e00463] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Revised: 01/14/2020] [Accepted: 04/23/2020] [Indexed: 11/15/2022]
28
Tomato RNA-seq Data Mining Reveals the Taxonomic and Functional Diversity of Root-Associated Microbiota. Microorganisms 2019;8:microorganisms8010038. [PMID: 31878183 PMCID: PMC7022885 DOI: 10.3390/microorganisms8010038] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2019] [Revised: 12/19/2019] [Accepted: 12/21/2019] [Indexed: 02/06/2023]  Open
29
Kumar H, Park W, Lim D, Srikanth K, Kim JM, Jia XZ, Han JL, Hanotte O, Park JE, Oyola SO. Whole metagenome sequencing of cecum microbiomes in Ethiopian indigenous chickens from two different altitudes reveals antibiotic resistance genes. Genomics 2019;112:1988-1999. [PMID: 31759120 DOI: 10.1016/j.ygeno.2019.11.011] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Revised: 10/11/2019] [Accepted: 11/18/2019] [Indexed: 12/24/2022]
30
Shakya M, Lo CC, Chain PSG. Advances and Challenges in Metatranscriptomic Analysis. Front Genet 2019;10:904. [PMID: 31608125 PMCID: PMC6774269 DOI: 10.3389/fgene.2019.00904] [Citation(s) in RCA: 177] [Impact Index Per Article: 35.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 08/26/2019] [Indexed: 11/13/2022]  Open
31
Cruz AF, Barka GD, Blum LEB, Tanaka T, Ono N, Kanaya S, Reineke A. Evaluation of microbial communities in peels of Brazilian tropical fruits by amplicon sequence analysis. Braz J Microbiol 2019;50:739-748. [PMID: 31073985 PMCID: PMC6863208 DOI: 10.1007/s42770-019-00088-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Accepted: 03/20/2019] [Indexed: 10/26/2022]  Open
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