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Zheng J, Tang H, Wang J, Liu Y, Ge L, Liu G, Shi Q, Zhang Y. Genome-Wide Identification and Expression Analysis of the High-Mobility Group B ( HMGB) Gene Family in Plant Response to Abiotic Stress in Tomato. Int J Mol Sci 2024; 25:5850. [PMID: 38892039 PMCID: PMC11172549 DOI: 10.3390/ijms25115850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 05/24/2024] [Accepted: 05/25/2024] [Indexed: 06/21/2024] Open
Abstract
High-mobility group B (HMGB) proteins are a class of non-histone proteins associated with eukaryotic chromatin and are known to regulate a variety of biological processes in plants. However, the functions of HMGB genes in tomato (Solanum lycopersicum) remain largely unexplored. Here, we identified 11 members of the HMGB family in tomato using BLAST. We employed genome-wide identification, gene structure analysis, domain conservation analysis, cis-acting element analysis, collinearity analysis, and qRT-PCR-based expression analysis to study these 11 genes. These genes were categorized into four groups based on their unique protein domain structures. Despite their structural diversity, all members contain the HMG-box domain, a characteristic feature of the HMG superfamily. Syntenic analysis suggested that tomato SlHMGBs have close evolutionary relationships with their homologs in other dicots. The promoter regions of SlHMGBs are enriched with numerous cis-elements related to plant growth and development, phytohormone responsiveness, and stress responsiveness. Furthermore, SlHMGB members exhibited distinct tissue-specific expression profiles, suggesting their potential roles in regulating various aspects of plant growth and development. Most SlHMGB genes respond to a variety of abiotic stresses, including salt, drought, heat, and cold. For instance, SlHMGB2 and SlHMGB4 showed positive responses to salt, drought, and cold stresses. SlHMGB1, SlHMGB3, and SlHMGB8 were involved in responses to two types of stress: SlHMGB1 responded to drought and heat, while SlHMGB3 and SlHMGB8 responded to salt and heat. SlHMGB6 and SlHMGB11 were solely regulated by drought and heat stress, respectively. Under various treatment conditions, the number of up-regulated genes significantly outnumbered the down-regulated genes, implying that the SlHMGB family may play a crucial role in mitigating abiotic stress in tomato. These findings lay a foundation for further dissecting the precise roles of SlHMGB genes.
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Affiliation(s)
| | | | | | | | | | | | | | - Yan Zhang
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai’an 271018, China; (J.Z.); (H.T.); (J.W.); (Y.L.); (L.G.); (G.L.); (Q.S.)
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Niu J, Xu M, Zong N, Sun J, Zhao L, Hui W. Ascorbic acid releases dormancy and promotes germination by an integrated regulation of abscisic acid and gibberellin in Pyrus betulifolia seeds. PHYSIOLOGIA PLANTARUM 2024; 176:e14271. [PMID: 38566130 DOI: 10.1111/ppl.14271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Revised: 02/28/2024] [Accepted: 03/08/2024] [Indexed: 04/04/2024]
Abstract
Seed dormancy is an important life history state in which intact viable seeds delay or prevent germination under suitable conditions. Ascorbic acid (AsA) acts as a small molecule antioxidant, and breaking seed dormancy and promoting subsequent growth are among its numerous functions. In this study, a germination test using Pyrus betulifolia seeds treated with exogenous AsA or AsA synthesis inhibitor lycorine (Lyc) and water absorption was conducted. The results indicated that AsA released dormancy and increased germination and 20 mmol L-1 AsA promoted cell division, whereas Lyc reduced germination. Seed germination showed typical three phases of water absorption; and seeds at five key time points were sampled for transcriptome analysis. It revealed that multiple pathways were involved in breaking dormancy and promoting germination through transcriptome data, and 12 differentially expressed genes (DEGs) related to the metabolism and signal transduction of abscisic acid (ABA) and gibberellins (GA) were verified by subsequent RT-qPCR. For metabolites, exogenous AsA increased endogenous AsA and GA3 but reduced ABA and the ABA/GA3 ratio. In addition, three genes regulating ABA synthesis were downregulated by AsA, while five genes mediating ABA degradation were upregulated. Taken together, AsA regulates the pathways associated with ABA and GA synthesis, catalysis, and signal transduction, with subsequent reduction in ABA and increase in GA and further the balance of ABA/GA, ultimately releasing dormancy and promoting germination.
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Affiliation(s)
- Junpeng Niu
- College of Life Sciences, Shaanxi Normal University, China
- College of Grassland Agriculture, Northwest A&F University, Yangling, China
| | - Mingzhen Xu
- College of Life Sciences, Shaanxi Normal University, China
| | - Na Zong
- College of Life Sciences, Shaanxi Normal University, China
| | - Jia Sun
- College of Life Sciences, Shaanxi Normal University, China
| | - Lei Zhao
- College of Life Sciences, Shaanxi Normal University, China
| | - Wei Hui
- College of Life Sciences, Shaanxi Normal University, China
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Peng X, Wang N, Sun S, Geng L, Guo N, Liu A, Chen S, Ahammed GJ. Reactive oxygen species signaling is involved in melatonin-induced reduction of chlorothalonil residue in tomato leaves. JOURNAL OF HAZARDOUS MATERIALS 2023; 443:130212. [PMID: 36308936 DOI: 10.1016/j.jhazmat.2022.130212] [Citation(s) in RCA: 22] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Revised: 10/02/2022] [Accepted: 10/17/2022] [Indexed: 06/16/2023]
Abstract
Pesticide overuse has led to serious global concerns regarding food safety and environmental pollution. Although the reduction of pesticide residue is critical, our knowledge about induced pesticide metabolism in plants remains fragmentary. Melatonin (N-acetyl-5-methoxytryptamine) is an effective stress-relieving agent in both animals and plants, but little is known about the melatonin signaling mechanism and its effect on pesticide metabolism in plants. Here, we found that exogenous melatonin treatment significantly reduced chlorothalonil residue by 41 % but suppression of endogenous melatonin accumulation increased chlorothalonil residue in tomato leaves. Moreover, melatonin increased photosynthesis, Fv/Fm, Calvin cycle enzyme activity, antioxidant enzyme activity, glutathione pool, and RESPIRATORY BURST HOMOLOG1 (RBOH1) expression in tomato leaves. However, the upregulation of RBOH1, CYP724B2, GST1, GST2, GSH and ABC, the increased glutathione concentrations and the activity of detoxification enzymes due to melatonin treatment were all significantly attenuated by the treatment with an NADPH oxidase inhibitor and a ROS scavenger, indicating a clear relationship between the reduction of pesticide residue and induction in detoxifying enzymes and genes upon melatonin treatment in an apoplastic H2O2-dependent manner. These results reveal that melatonin-induced reduction in chlorothalonil residue is mediated by H2O2 signaling in tomato leaves.
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Affiliation(s)
- Xiaohua Peng
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, PR China
| | - Nannan Wang
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, PR China
| | - Shuangsheng Sun
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, PR China
| | - Lijiahong Geng
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, PR China
| | - Ning Guo
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, PR China
| | - Airong Liu
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, PR China
| | - Shuangchen Chen
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, PR China; Henan International Joint Laboratory of Stress Resistance Regulation and Safe Production of Protected Vegetables, Luoyang 471023, PR China; Henan Engineering Technology Research Center for Horticultural Crop safety and Disease Control, Luoyang 471023, PR China.
| | - Golam Jalal Ahammed
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, PR China; Henan International Joint Laboratory of Stress Resistance Regulation and Safe Production of Protected Vegetables, Luoyang 471023, PR China; Henan Engineering Technology Research Center for Horticultural Crop safety and Disease Control, Luoyang 471023, PR China.
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Huang Y, Liu J, Li J, Sun M, Duan Y. The heat shock protein 20 gene editing suppresses mycelial growth of Botryosphaeria dothidea and decreases its pathogenicity to postharvest apple fruits. Front Microbiol 2022; 13:930012. [PMID: 35966691 PMCID: PMC9363843 DOI: 10.3389/fmicb.2022.930012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 07/04/2022] [Indexed: 11/25/2022] Open
Abstract
Apple ring rot caused by Botryosphaeria dothidea is an essential and prevalent disease in the apple orchard in China. Our previous study demonstrated that dimethyl trisulfide (DT) from Chinese leek (Allium tuberosum) significantly suppressed the mycelial growth of B. dothidea and inhibited the incidence of apple ring rot postharvest. However, the mechanism underlying the inhibitory role of DT against B. dothidea is not fully understood. Comparing the control and the DT-treated B. dothidea mycelial transcriptomes revealed that heat shock protein 20 (Hsp20) strongly responded to DT treatment. This study identified four Hsp20 genes throughout the B. dothidea genome (BdHsp20_1-4). Each BdHsp20 gene had a conserved ACD with a variable N-terminal region and a short C-terminal extension. The segmental duplication event has contributed to the expansion of the BdHsp20 gene family. Compared to the wild-type strain, the CRISPR/Cas9 gene-edited BdHsp20 mutant (ΔBdHsp20) decreased the mycelial growth by 55.95% and reduced the disease symptom in postharvest apple fruit by 96.34%. However, the BdHsp20 complemented strain (ΔBdHsp20_C) significantly restored the growth and pathogenicity, which suggested that the BdHsp20 gene was closely involved in the growth and pathogenicity of B. dothidea. This study would accelerate the exploration of the molecular mechanism of the inhibitory effect of DT against B. dothidea and also provide new insights for the management of apple ring rot disease.
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Affiliation(s)
- Yonghong Huang
- College of Horticulture, Qingdao Agricultural University, Qingdao, China
- Laboratory of Quality and Safety Risk Assessment for Fruit (Qingdao), Ministry of Agriculture and Rural Affairs, Qingdao, China
- National Technology Centre for Whole Process Quality Control of FSEN Horticultural Products (Qingdao), Qingdao, China
- Qingdao Key Laboratory of Modern Agriculture Quality and Safety Engineering, Qingdao, China
- *Correspondence: Yonghong Huang
| | - Junping Liu
- College of Horticulture, Qingdao Agricultural University, Qingdao, China
- Laboratory of Quality and Safety Risk Assessment for Fruit (Qingdao), Ministry of Agriculture and Rural Affairs, Qingdao, China
- National Technology Centre for Whole Process Quality Control of FSEN Horticultural Products (Qingdao), Qingdao, China
- Qingdao Key Laboratory of Modern Agriculture Quality and Safety Engineering, Qingdao, China
| | - Jinghui Li
- College of Horticulture, Qingdao Agricultural University, Qingdao, China
- Laboratory of Quality and Safety Risk Assessment for Fruit (Qingdao), Ministry of Agriculture and Rural Affairs, Qingdao, China
- National Technology Centre for Whole Process Quality Control of FSEN Horticultural Products (Qingdao), Qingdao, China
- Qingdao Key Laboratory of Modern Agriculture Quality and Safety Engineering, Qingdao, China
| | - Meng Sun
- College of Horticulture, Qingdao Agricultural University, Qingdao, China
- Laboratory of Quality and Safety Risk Assessment for Fruit (Qingdao), Ministry of Agriculture and Rural Affairs, Qingdao, China
- National Technology Centre for Whole Process Quality Control of FSEN Horticultural Products (Qingdao), Qingdao, China
- Qingdao Key Laboratory of Modern Agriculture Quality and Safety Engineering, Qingdao, China
| | - Yanxin Duan
- College of Horticulture, Qingdao Agricultural University, Qingdao, China
- Laboratory of Quality and Safety Risk Assessment for Fruit (Qingdao), Ministry of Agriculture and Rural Affairs, Qingdao, China
- National Technology Centre for Whole Process Quality Control of FSEN Horticultural Products (Qingdao), Qingdao, China
- Qingdao Key Laboratory of Modern Agriculture Quality and Safety Engineering, Qingdao, China
- Yanxin Duan
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