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Man JN, Zhu J, Weng GJ, Li JJ, Zhao JW. Using gold-based nanomaterials for fighting pathogenic bacteria: from detection to therapy. Mikrochim Acta 2024; 191:627. [PMID: 39325115 DOI: 10.1007/s00604-024-06713-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Accepted: 09/14/2024] [Indexed: 09/27/2024]
Abstract
Owing to the unique quantum size effect and surface effect, gold-based nanomaterials (GNMs) are promising for pathogen detection and broad-spectrum antimicrobial activity. This review summarizes recent research on GNMs as sensors for detecting pathogens and as tools for their elimination. Firstly, the need for pathogen detection is briefly introduced with an overview of the physicochemical properties of gold nanomaterials. And then strategies for the application of GNMs in pathogen detection are discussed. Colorimetric, fluorescence, surface-enhanced Raman scattering (SERS) techniques, dark-field microscopy detection and electrochemical methods can enable efficient, sensitive, and specific pathogen detection. The third section describes the antimicrobial applications of GNMs. They can be used for antimicrobial agent delivery and photothermal conversion and can act synergistically with photosensitizers to achieve the precise killing of pathogens. In addition, GNMs are promising for integrated pathogen detection and treatment; for example, combinations of colorimetric or SERS detection with photothermal sterilization have been demonstrated. Finally, future outlooks for the applications of GNMs in pathogen detection and treatment are summarized.
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Affiliation(s)
- Jia-Ni Man
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, 710049, China
| | - Jian Zhu
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, 710049, China.
| | - Guo-Jun Weng
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, 710049, China
| | - Jian-Jun Li
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, 710049, China
| | - Jun-Wu Zhao
- The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an, 710049, China
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Souza AS, Bezerra MA, Cerqueira UMFM, Rodrigues CJO, Santos BC, Novaes CG, Almeida ERV. An introductory review on the application of principal component analysis in the data exploration of the chemical analysis of food samples. Food Sci Biotechnol 2024; 33:1323-1336. [PMID: 38585573 PMCID: PMC10991959 DOI: 10.1007/s10068-023-01509-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 11/21/2023] [Accepted: 12/15/2023] [Indexed: 04/09/2024] Open
Abstract
Principal component analysis (PCA) is currently one of the most used multivariate data analysis techniques for evaluating information from food analysis. In this review, a brief introduction to the theoretical principles that underlie PCA will be given, in addition to presenting the most commonly used computer programs. An example from the literature was discussed to illustrate the use of this chemometric tool and interpretation of graphs and parameters obtained. A list of recently published articles will also be presented, in order to show the applicability and potential of the technique in the food analysis field.
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Affiliation(s)
- Anderson Santos Souza
- Instituto Multidisciplinar em Saúde, Universidade Federal da Bahia, Campus Anísio Teixeira, Rua Hormindo Barros, 58, Vitória da Conquista, Bahia 45029-094 Brazil
- Instituto Nacional de Ciência e Tecnologia em Energia e Ambiente - INCT E&A, Universidade Federal da Bahia, Salvador, Bahia 40170-115 Brazil
| | - Marcos Almeida Bezerra
- Departamento de Ciências e Tecnologias, Universidade Estadual do Sudoeste da Bahia, Campus de Jequié, Rua José Moreira Sobrinho, Jequié, Bahia 45206-190 Brazil
| | | | - Caiene Jesus Oliveira Rodrigues
- Instituto Multidisciplinar em Saúde, Universidade Federal da Bahia, Campus Anísio Teixeira, Rua Hormindo Barros, 58, Vitória da Conquista, Bahia 45029-094 Brazil
| | - Bianca Cotrim Santos
- Instituto Multidisciplinar em Saúde, Universidade Federal da Bahia, Campus Anísio Teixeira, Rua Hormindo Barros, 58, Vitória da Conquista, Bahia 45029-094 Brazil
| | - Cleber Galvão Novaes
- Departamento de Ciências e Tecnologias, Universidade Estadual do Sudoeste da Bahia, Campus de Jequié, Rua José Moreira Sobrinho, Jequié, Bahia 45206-190 Brazil
| | - Erica Raina Venâncio Almeida
- Departamento de Ciências e Tecnologias, Universidade Estadual do Sudoeste da Bahia, Campus de Jequié, Rua José Moreira Sobrinho, Jequié, Bahia 45206-190 Brazil
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Gong D, Li B, Wu B, Fu D, Li Z, Wei H, Guo S, Ding G, Wang B. The Integration of the Metabolome and Transcriptome for Dendrobium nobile Lindl. in Response to Methyl Jasmonate. Molecules 2023; 28:7892. [PMID: 38067620 PMCID: PMC10707931 DOI: 10.3390/molecules28237892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 11/23/2023] [Accepted: 11/28/2023] [Indexed: 12/18/2023] Open
Abstract
Dendrobium nobile Lindl., as an endangered medicinal plant within the genus Dendrobium, is widely distributed in southwestern China and has important ecological and economic value. There are a variety of metabolites with pharmacological activity in D. nobile. The alkaloids and polysaccharides contained within D. nobile are very important active components, which mainly have antiviral, anti-tumor, and immunity improvement effects. However, the changes in the compounds and functional genes of D. nobile induced by methyl jasmonate (MeJA) are not clearly understood. In this study, the metabolome and transcriptome of D. nobile were analyzed after exposure to MeJA. A total of 377 differential metabolites were obtained through data analysis, of which 15 were related to polysaccharide pathways and 35 were related to terpenoids and alkaloids pathways. Additionally, the transcriptome sequencing results identified 3256 differentially expressed genes that were discovered in 11 groups. Compared with the control group, 1346 unigenes were differentially expressed in the samples treated with MeJA for 14 days (TF14). Moreover, the expression levels of differentially expressed genes were also significant at different growth and development stages. According to GO and KEGG annotations, 189 and 99 candidate genes were identified as being involved in terpenoid biosynthesis and polysaccharide biosynthesis, respectively. In addition, the co-expression analysis indicated that 238 and 313 transcription factors (TFs) may contribute to the regulation of terpenoid and polysaccharide biosynthesis, respectively. Through a heat map analysis, fourteen terpenoid synthetase genes, twenty-three cytochrome P450 oxidase genes, eight methyltransferase genes, and six aminotransferase genes were identified that may be related to dendrobine biosynthesis. Among them, one sesquiterpene synthase gene was found to be highly expressed after the treatment with MeJA and was positively correlated with the content of dendrobine. This study provides important and valuable metabolomics and transcriptomic information for the further understanding of D. nobile at the metabolic and molecular levels and provides candidate genes and possible intermediate compounds for the dendrobine biosynthesis pathway, which lays a certain foundation for further research on and application of Dendrobium.
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Affiliation(s)
- Daoyong Gong
- College of Bioengineering, Chongqing University, Chongqing 400045, China;
- Institute of Medicinal Plant Development, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100193, China; (B.W.); (H.W.); (S.G.); (G.D.)
| | - Biao Li
- Institute of Medicinal Plant Development, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100193, China; (B.W.); (H.W.); (S.G.); (G.D.)
| | - Bin Wu
- Institute of Medicinal Plant Development, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100193, China; (B.W.); (H.W.); (S.G.); (G.D.)
| | - Deru Fu
- Steinhardt School of Culture, Education, and Human Development, New York University, New York, NY 10003, USA;
| | - Zesheng Li
- Dehong Tropical Agriculture Research Institute of Yunnan, Ruili 678600, China;
| | - Haobo Wei
- Institute of Medicinal Plant Development, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100193, China; (B.W.); (H.W.); (S.G.); (G.D.)
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu 611137, China
| | - Shunxing Guo
- Institute of Medicinal Plant Development, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100193, China; (B.W.); (H.W.); (S.G.); (G.D.)
| | - Gang Ding
- Institute of Medicinal Plant Development, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100193, China; (B.W.); (H.W.); (S.G.); (G.D.)
| | - Bochu Wang
- College of Bioengineering, Chongqing University, Chongqing 400045, China;
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Shi L, DuJiang M, Gao P. A high performance computing technology powered multimedia fusion model in university English translation. PeerJ Comput Sci 2023; 9:e1608. [PMID: 37869466 PMCID: PMC10588685 DOI: 10.7717/peerj-cs.1608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Accepted: 08/31/2023] [Indexed: 10/24/2023]
Abstract
Various forms of materials, such as pictures, videos and texts, have rapidly brought the college English translation teaching model into the era of multimedia integration. This makes it difficult for English teachers to improve college English translation by using unique materials, so as to form their own unique teaching style. In view of this, a multimedia comprehensive English translation framework based on the combination of big data technology and multimedia teaching mode is proposed. At the same time, the idea of building the framework is introduced from two perspectives: the integration of big data technology and multimedia, and the integration of multimedia and English teaching process. Then, a recursive neural network algorithm based on ant colony optimization algorithm is proposed and tested. Finally, the simulation results show that the proposed method has significantly improved the accuracy and retention rate, indicating the effectiveness of the framework.
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Affiliation(s)
- Lin Shi
- Xi’an University of Architecture and Technology, Xi’an, China
| | - Minne DuJiang
- Xi’an University of Architecture and Technology, Xi’an, China
| | - Ping Gao
- Xi’an University of Architecture and Technology, Xi’an, China
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Xu S, Wu W, Gong C, Dong J, Qiao C. Identification of the interference spectra of edible oil samples based on neighborhood rough set attribute reduction. APPLIED OPTICS 2023; 62:1537-1546. [PMID: 36821315 DOI: 10.1364/ao.475459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 01/22/2023] [Indexed: 06/18/2023]
Abstract
Due to numerous edible oil safety problems in China, an automatic oil quality detection technique is urgently needed. In this study, rough set theory and Fourier transform spectrum are combined for proposing a digital identification method for edible oil. First, the Fourier transform spectra of three different types of edible oil samples, including colza oil, waste oil, and peanut oil, are measured. After the input spectra are differentially and smoothly processed, the characteristic wavelength bands are selected with neighborhood rough set attribution reduction (NRSAR). Moreover, the classification models are established based on random forest (RF) and extreme learning machine (ELM) algorithms. Finally, confusion matrix, classification accuracy, sensitivity, specificity, and the distribution of judgment are calculated for evaluating the classification performances of different models and determining the optimal oil identification model. The results show that by using the third-order difference pre-processing method, 193 wavelength bands in the visible range can be reduced to 10 characteristic wavelengths, with a compression ratio of over 88.61%. Using the established NRS-RF and NRS-ELM models, the total identification accuracies are 91.67% and 93.33%, respectively. In particular, the identification accuracy of peanut oil using the NRS-ELM model reaches up to 100%, whereas the identification accuracies obtained using the principal component analysis (PCA)-based models that are commonly used in information processing (PCA-RF and PCA-ELM) are 81.67% and 90.00%, respectively. As compared with feature extraction methods, the proposed NRSAR shows directive advantages in terms of precision, sensitivity, specificity, and the distribution of judgment. In addition, the execution time is also reduced by approximately 1/3. Conclusively, the NRSAR method and NRS-ELM the model in the spectral identification of edible oil show favorable performance. They are expected to bring forth insightful oil identification techniques.
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