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Shah I, Sarim KM, Sikka VK, Dudeja SS, Gahlot DK. Developed Rhizobium Strains Enhance Soil Fertility and Yield of Legume Crops in Haryana, India. J Basic Microbiol 2024:e2400327. [PMID: 39021277 DOI: 10.1002/jobm.202400327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2024] [Revised: 06/17/2024] [Accepted: 06/26/2024] [Indexed: 07/20/2024]
Abstract
Three strains of Gram-negative bacterium, Rhizobium, were developed by gamma (γ)-irradiation random mutagenesis. The developed strains were evaluated for their augmented features for symbiotic association, nitrogen fixation, and crop yield of three leguminous plants-chickpea, field-pea, and lentil-in agricultural fields of the northern Indian state of Haryana. Crops treated with developed mutants exhibited significant improvement in plant features and the yield of crops when compared to the control-uninoculated crops and crops grown with indigenous or commercial crop-specific strains of Rhizobium. This improvement was attributed to generated mutants, MbPrRz1 (on chickpea), MbPrRz2 (on lentil), and MbPrRz3 (on field-pea). Additionally, the cocultured symbiotic response of MbPrRz1 and MbPrRz2 mutants was found to be more pronounced on all three crops. The statistical analysis using Pearson's correlation coefficients revealed that nodulation and plant biomass were the most related parameters of crop yield. Among the effectiveness of developed mutants, MbPrRz1 yielded the best results for all three tested crops. Moreover, the developed mutants enhanced macro- and micronutrients of the experimental fields when compared with fields harboring the indigenous rhizobial community. These developed mutants were further genetically characterized, predominantly expressing nitrogen fixation marker, nifH, and appeared to belong to Mesorhizobium ciceri (MbPrRz1) and Rhizobium leguminosarum (both MbPrRz2 and MbPrRz3). In summary, this study highlights the potential of developed Rhizobium mutants as effective biofertilizers for sustainable agriculture, showcasing their ability to enhance symbiotic relationships, crop yield, and soil fertility.
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Affiliation(s)
- Ikbal Shah
- Department of Molecular Biology, Biotechnology and Bioinformatics, CCS Haryana Agricultural University, Hisar, India
- Department of Microbiology, OM Sterling Global University, Hisar, India
| | - Khan M Sarim
- Department of Microbiology, CCS Haryana Agricultural University, Hisar, India
- Division of Physical Chemistry, Institute Ruđer Bošković, Zagreb, Croatia
| | - Virendra K Sikka
- Department of Molecular Biology, Biotechnology and Bioinformatics, CCS Haryana Agricultural University, Hisar, India
| | - Surjit S Dudeja
- Department of Microbiology, CCS Haryana Agricultural University, Hisar, India
| | - Dharmender K Gahlot
- Department of Molecular Biology, Umeå University, Umeå, Sweden
- Umeå Centre for Microbial Research (UCMR), Umeå University, Umeå, Sweden
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Ali Q, Shabaan M, Ashraf S, Kamran M, Zulfiqar U, Ahmad M, Zahir ZA, Sarwar MJ, Iqbal R, Ali B, Ali MA, Elshikh MS, Arslan M. Comparative efficacy of different salt tolerant rhizobial inoculants in improving growth and productivity of Vigna radiata L. under salt stress. Sci Rep 2023; 13:17442. [PMID: 37838750 PMCID: PMC10576803 DOI: 10.1038/s41598-023-44433-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2023] [Accepted: 10/08/2023] [Indexed: 10/16/2023] Open
Abstract
Worldwide, salinity severely affects agricultural production of crops such as mung bean in arid and semi-arid regions. In saline conditions, various species of Rhizobium can be used to enhance nodulation and induce salinity tolerance in maize. The present study conducted a pot experiment to determine the efficiency of three rhizobial isolates under different salinity conditions, such as 1.41, 4 and 6 dS m-1, on mung bean growth parameters, antioxidant status and yield. Results revealed that salt stress imparted adverse effects on the growth, antioxidants, yield and nodulation of mung bean. Under high salt stress conditions, fresh weights were reduced for roots (78.24%), shoots (64.52%), pods (58.26%) and height (32.33%) as compared to un-inoculated control plants. However, an increase in proline content (46.14%) was observed in high salt stressed plants. Three Rhizobium isolates (Mg1, Mg2, and Mg3), on the other hand, mitigated the negative effects of salt stress after inoculation. However, effects of Mg3 inoculation were prominent at 6 dS m-1 and it enhanced the plant height (45.10%), fresh weight of shoot (58.68%), root (63.64%), pods fresh weight (34.10%), pods number per plant (92.04%), and grain nitrogen concentration (21%) than un-inoculated control. Rhizobium strains Mg1, and Mg2 expressed splendid results at 1.41 and 4 dS m-1 salinity stress. The growth promotion effects might be due to improvement in mineral uptake and ionic balance that minimized the inhibitory effects caused by salinity stress. Thus, inoculating with these strains may boost mung bean growth and yield under salinity stress.
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Affiliation(s)
- Qasim Ali
- Department of Soil Science, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, 63100, Pakistan.
| | - Muhammad Shabaan
- Land Resources Research Institute, National Agricultural Research Centre, Islamabad, Pakistan
| | - Sana Ashraf
- College of Earth and Environmental Sciences, Quaid-e-Azam Campus, University of the Punjab, Lahore, 54590, Pakistan
| | - Muhammad Kamran
- Pakistan Council for Science and Technology, Ministry of Science and Technology, Islamabad, 44000, Pakistan
| | - Usman Zulfiqar
- Department of Agronomy, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, 63100, Pakistan.
| | - Maqshoof Ahmad
- Department of Soil Science, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, 63100, Pakistan
| | - Zahir Ahmad Zahir
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Muhammad Junaid Sarwar
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Rashid Iqbal
- Department of Agronomy, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, 63100, Pakistan
| | - Baber Ali
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan
| | - M Ajmal Ali
- Department of Botany and Microbiology, College of Science, King Saud University, 11451, Riyadh, Saudi Arabia
| | - Mohamed S Elshikh
- Department of Botany and Microbiology, College of Science, King Saud University, 11451, Riyadh, Saudi Arabia
| | - Muhammad Arslan
- Institute of Crop Science and Resource Conservation (INRES), University of Bonn, Bonn, Germany.
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Debnath S, Das A, Maheshwari DK, Pandey P. Treatment with atypical rhizobia, Pararhizobium giardinii and Ochrobactrum sp. modulate the rhizospheric bacterial community, and enhances Lens culinaris growth in fallow-soil. Microbiol Res 2022; 267:127255. [PMID: 36434988 DOI: 10.1016/j.micres.2022.127255] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 09/26/2022] [Accepted: 11/04/2022] [Indexed: 11/09/2022]
Abstract
Diazotrophic nodule isolates are acknowledged promoters of plant growth and rhizospheric community. Consequently, in the lentil agroecosystem, inoculation of atypical rhizobial isolates could be a viable alternative to chemical fertilizers for fallow land usage optimization. The aim of this study is to evaluate and select the rhizobial isolates of lentil nodules with plant-growth-promoting (PGP) attributes and to elucidate their application in rice-fallow soil for determining the growth of lentils and its impact on the rhizospheric bacterial community. Lentil's nodule isolates were identified and screened for their PGP attributes, biofilm, exopolysaccharide (EPS) formation, and early plant growth promotion. The pot experiment with the selected atypical rhizobial isolates Pararhizobium giardinii (P1) and Ochrobactrum sp. (42S) significantly enhanced germination, vigour index, nodule formation (P1 60%, 42S 42% increase), nodule fresh weight, shoot length (65% P1 & 35% 42S), and chlorophyll content as compared to the uninoculated control treatment. The genes for nitrogen fixation nifH and nifK were detected in both isolates. Scanning Electron Microscopy (SEM) revealed successful root and nodule colonization by both isolates, while Transmission Electron Microscopy (TEM) displayed nitrogen-fixing zones within root nodules. Proteobacteria predominated in the lentil rhizosphere of all the treatments. Whereas, application of either P1 or 42S increased Rhizobium, Mesorhizobium, and Bradyrhizobium genra, thus positively modulating rhizospheric community structure. The correlation network analysis revealed an abundance of some interdependent bacterial genera with a possible role in overall plant growth. Functional genes for siderophore biosynthesis and ABC transporter were positively modulated by application of either P1 or 42S. This study showed the significant effect of P. giardinii P1 and Ochrobactrum sp. 42S of L. culinaris on lentil growth, improving fallowsoil health for optimum usage, and modulated rhizospheric community structure which strongly manifest prospects of low-cost, eco-friendly and sustainable biofertilizers.
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Affiliation(s)
- Sourav Debnath
- Department of Microbiology, Assam University, Silchar 788011, India
| | - Ankita Das
- Department of Microbiology, Assam University, Silchar 788011, India
| | - D K Maheshwari
- Department of Botany and Microbiology, Gurukula Kangri University, Haridwar 249404, Uttarakhand, India
| | - Piyush Pandey
- Department of Microbiology, Assam University, Silchar 788011, India.
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Wekesa C, Jalloh AA, Muoma JO, Korir H, Omenge KM, Maingi JM, Furch ACU, Oelmüller R. Distribution, Characterization and the Commercialization of Elite Rhizobia Strains in Africa. Int J Mol Sci 2022; 23:ijms23126599. [PMID: 35743041 PMCID: PMC9223902 DOI: 10.3390/ijms23126599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Revised: 06/07/2022] [Accepted: 06/09/2022] [Indexed: 02/04/2023] Open
Abstract
Grain legumes play a significant role in smallholder farming systems in Africa because of their contribution to nutrition and income security and their role in fixing nitrogen. Biological Nitrogen Fixation (BNF) serves a critical role in improving soil fertility for legumes. Although much research has been conducted on rhizobia in nitrogen fixation and their contribution to soil fertility, much less is known about the distribution and diversity of the bacteria strains in different areas of the world and which of the strains achieve optimal benefits for the host plants under specific soil and environmental conditions. This paper reviews the distribution, characterization, and commercialization of elite rhizobia strains in Africa.
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Affiliation(s)
- Clabe Wekesa
- Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany and Plant Physiology, Friedrich-Schiller-University Jena, Dornburger Str. 159, 07743 Jena, Germany; (C.W.); (K.M.O.); (A.C.U.F.)
| | - Abdul A. Jalloh
- International Centre of Insect Physiology and Ecology, P.O. Box 30772, Nairobi 00100, Kenya;
| | - John O. Muoma
- Department of Biological Sciences, Masinde Muliro University of Science and Technology, P.O. Box 190, Kakamega 50100, Kenya;
| | - Hezekiah Korir
- Crops, Horticulture and Soils Department, Egerton University, P.O. Box 536, Egerton 20115, Kenya;
| | - Keziah M. Omenge
- Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany and Plant Physiology, Friedrich-Schiller-University Jena, Dornburger Str. 159, 07743 Jena, Germany; (C.W.); (K.M.O.); (A.C.U.F.)
| | - John M. Maingi
- Department of Biochemistry, Microbiology and Biotechnology, Kenyatta University, P.O. Box 43844, Nairobi 00100, Kenya;
| | - Alexandra C. U. Furch
- Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany and Plant Physiology, Friedrich-Schiller-University Jena, Dornburger Str. 159, 07743 Jena, Germany; (C.W.); (K.M.O.); (A.C.U.F.)
| | - Ralf Oelmüller
- Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany and Plant Physiology, Friedrich-Schiller-University Jena, Dornburger Str. 159, 07743 Jena, Germany; (C.W.); (K.M.O.); (A.C.U.F.)
- Correspondence: ; Tel.: +49-3641949232
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Qiu Z, Paungfoo-Lonhienne C, Ye J, Garcia AG, Petersen I, Di Bella L, Hobbs R, Ibanez M, Heenan M, Wang W, Reeves S, Schmidt S. Biofertilizers can enhance nitrogen use efficiency of sugarcane. Environ Microbiol 2022; 24:3655-3671. [PMID: 35506306 PMCID: PMC9544788 DOI: 10.1111/1462-2920.16027] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 04/21/2022] [Indexed: 12/01/2022]
Abstract
Fertilizers are costly inputs into crop systems. To compensate for inefficiencies and losses from soil, farmers apply on average double the amount of nitrogen (N) fertilizer acquired by crops. We explored if N efficiency improves with biofertilizers formulated with organic waste, mineral N or plant growth-promoting rhizobacteria (PGPR). We compared treatments receiving mineral N fertilizer or biofertilizers at industry-recommended (100%) or lower (60%) N rates at two commercial sugarcane farms. Biofertilizer at the 60% N-rate generated promising results at one farm with significantly higher biomass and sugar yield than the no-N control, which matched the 100% mineral N treatment. This yield difference was accompanied by a shift in microbial diversity and composition. Correlation analysis confirmed that shifts in microbial communities were strongly linked to soil mineral N levels, as well as crop productivity and yield. Microbial co-occurrence networks further revealed that biofertilizer, including treatments with an added PGPR, can enhance bacterial associations, especially in the context of complex fungal networks. Collectively, the results confirm that biofertilizers have quantifiable effects on soil microbial communities in a crop system setting, which underscores the opportunities for biofertilizers to promote N use efficiency and the circular N economy.
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Affiliation(s)
- Zhiguang Qiu
- School of Agriculture and Food Sciences, The University of Queensland, St Lucia, Qld, 4072, Australia.,School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, China
| | | | - Jun Ye
- School of Agriculture and Food Sciences, The University of Queensland, St Lucia, Qld, 4072, Australia
| | - Axa Gonzalez Garcia
- Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Qld, 4072, Australia
| | - Ian Petersen
- School of Agriculture and Food Sciences, The University of Queensland, St Lucia, Qld, 4072, Australia.,Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Qld, 4072, Australia
| | - Lawrence Di Bella
- Herbert Cane Productivity Services Ltd., Ingham, Qld, 4850, Australia
| | - Richard Hobbs
- Herbert Cane Productivity Services Ltd., Ingham, Qld, 4850, Australia
| | - Minka Ibanez
- Herbert Cane Productivity Services Ltd., Ingham, Qld, 4850, Australia
| | - Marijke Heenan
- Department of Environment and Science, Brisbane, Qld, 4001, Australia
| | - Weijin Wang
- Department of Environment and Science, Brisbane, Qld, 4001, Australia
| | - Steven Reeves
- Department of Environment and Science, Brisbane, Qld, 4001, Australia
| | - Susanne Schmidt
- School of Agriculture and Food Sciences, The University of Queensland, St Lucia, Qld, 4072, Australia
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Riah N, de Lajudie P, Béna G, Heulin K, Djekoun A. Variability in symbiotic efficiency with respect to the growth of pea and lentil inoculated with various rhizobial genotypes originating from sub-humid and semi-arid regions of eastern Algeria. Symbiosis 2021. [DOI: 10.1007/s13199-021-00821-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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7
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Sheteiwy MS, Ali DFI, Xiong YC, Brestic M, Skalicky M, Hamoud YA, Ulhassan Z, Shaghaleh H, AbdElgawad H, Farooq M, Sharma A, El-Sawah AM. Physiological and biochemical responses of soybean plants inoculated with Arbuscular mycorrhizal fungi and Bradyrhizobium under drought stress. BMC PLANT BIOLOGY 2021; 21:195. [PMID: 33888066 PMCID: PMC8061216 DOI: 10.1186/s12870-021-02949-z] [Citation(s) in RCA: 63] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Accepted: 03/22/2021] [Indexed: 05/12/2023]
Abstract
BACKGROUND The present study aims to study the effects of biofertilizers potential of Arbuscular Mycorrhizal Fungi (AMF) and Bradyrhizobium japonicum (B. japonicum) strains on yield and growth of drought stressed soybean (Giza 111) plants at early pod stage (50 days from sowing, R3) and seed development stage (90 days from sowing, R5). RESULTS Highest plant biomass, leaf chlorophyll content, nodulation, and grain yield were observed in the unstressed plants as compared with water stressed-plants at R3 and R5 stages. At soil rhizosphere level, AMF and B. japonicum treatments improved bacterial counts and the activities of the enzymes (dehydrogenase and phosphatase) under well-watered and drought stress conditions. Irrespective of the drought effects, AMF and B. japonicum treatments improved the growth and yield of soybean under both drought (restrained irrigation) and adequately-watered conditions as compared with untreated plants. The current study revealed that AMF and B. japonicum improved catalase (CAT) and peroxidase (POD) in the seeds, and a reverse trend was observed in case of malonaldehyde (MDA) and proline under drought stress. The relative expression of the CAT and POD genes was up-regulated by the application of biofertilizers treatments under drought stress condition. Interestingly a reverse trend was observed in the case of the relative expression of the genes involved in the proline metabolism such as P5CS, P5CR, PDH, and P5CDH under the same conditions. The present study suggests that biofertilizers diminished the inhibitory effect of drought stress on cell development and resulted in a shorter time for DNA accumulation and the cycle of cell division. There were notable changes in the activities of enzymes involved in the secondary metabolism and expression levels of GmSPS1, GmSuSy, and GmC-INV in the plants treated with biofertilizers and exposed to the drought stress at both R3 and R5 stages. These changes in the activities of secondary metabolism and their transcriptional levels caused by biofertilizers may contribute to increasing soybean tolerance to drought stress. CONCLUSIONS The results of this study suggest that application of biofertilizers to soybean plants is a promising approach to alleviate drought stress effects on growth performance of soybean plants. The integrated application of biofertilizers may help to obtain improved resilience of the agro ecosystems to adverse impacts of climate change and help to improve soil fertility and plant growth under drought stress.
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Affiliation(s)
- Mohamed S Sheteiwy
- Department of Agronomy, Faculty of Agriculture, Mansoura University, Mansoura, 35516, Egypt.
- Salt-Soil Agricultural Center, Institute of Agriculture Resources and Environment, Jiangsu Academy of Agricultural Sciences (JAAS), Nanjing, 210014, China.
| | - Dina Fathi Ismail Ali
- Department of Agricultural Microbiology, Faculty of Agriculture, Mansoura University, Mansoura, 35516, Egypt
| | - You-Cai Xiong
- State Key Laboratory of Grassland Agro-ecosystems, Institute of Arid Agroecology, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China.
| | - Marian Brestic
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamycka 129, 16500, Prague, Czech Republic
- Department of Plant Physiology, Slovak University of Agriculture, 94911, Nitra, Slovakia
| | - Milan Skalicky
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamycka 129, 16500, Prague, Czech Republic
| | - Yousef Alhaj Hamoud
- College of Agricultural Science and Engineering, Hohai University, Nanjing, China
| | - Zaid Ulhassan
- Institute of Crop Science and Zhejiang Key Laboratory of Crop Germplasm, Zhejiang University, Hangzhou, 310058, China
| | - Hiba Shaghaleh
- College of Chemical Engineering, Nanjing Forestry University, Nanjing, 210037, China
| | - Hamada AbdElgawad
- Department of Botany, Faculty of Science, University of Beni-Suef, Beni-Suef, 62511, Egypt
| | - Muhammad Farooq
- Department of Plant Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, 123, Al-Khoud, Oman
| | - Anket Sharma
- State Key Laboratory of Silviculture, Zhejiang A&F University, Hangzhou, China
| | - Ahmed M El-Sawah
- Department of Agricultural Microbiology, Faculty of Agriculture, Mansoura University, Mansoura, 35516, Egypt.
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Gunnabo AH, van Heerwaarden J, Geurts R, Wolde-Meskel E, Degefu T, Giller KE. Phylogeography and Symbiotic Effectiveness of Rhizobia Nodulating Chickpea (Cicer arietinum L.) in Ethiopia. MICROBIAL ECOLOGY 2021; 81:703-716. [PMID: 33098438 PMCID: PMC7982387 DOI: 10.1007/s00248-020-01620-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Accepted: 10/12/2020] [Indexed: 06/11/2023]
Abstract
Chickpea (Cicer arietinum L.) used to be considered a restrictive host that nodulated and fixed nitrogen only with Mesorhizobium ciceri and M. mediterraneum. Recent analysis revealed that chickpea can also establish effective symbioses with strains of several other Mesorhizobium species such as M. loti, M. haukuii, M. amorphae, M. muleiense, etc. These strains vary in their nitrogen fixation potential inviting further exploration. We characterized newly collected mesorhizobial strains isolated from various locations in Ethiopia to evaluate genetic diversity, biogeographic structure and symbiotic effectiveness. Symbiotic effectiveness was evaluated in Leonard Jars using a locally released chickpea cultivar "Nattoli". Most of the new isolates belonged to a clade related to M. plurifarium, with very few sequence differences, while the total collection of strains contained three additional mesorhizobial genospecies associated with M. ciceri, M. abyssinicae and an unidentified Mesorhizobium species isolated from a wild host in Eritrea. The four genospecies identified represented a subset of the eight major Mesorhizobium clades recently reported for Ethiopia based on metagenomic data. All Ethiopian strains had nearly identical symbiotic genes that grouped them in a single cluster with M. ciceri, M. mediterraneum and M. muleiense, but not with M. plurifarium. Some phylogeographic structure was observed, with elevation and geography explaining some of the genetic differences among strains, but the relation between genetic identity and symbiotic effectiveness was observed to be weak.
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Affiliation(s)
- A H Gunnabo
- Plant Production Systems Group, Wageningen University and Research, Wageningen, The Netherlands.
| | - J van Heerwaarden
- Plant Production Systems Group, Wageningen University and Research, Wageningen, The Netherlands.
| | - R Geurts
- Laboratory of Molecular Biology, Department of Plant Science, Wageningen University, Wageningen, The Netherlands
| | - E Wolde-Meskel
- World Agroforestry Centre (ICRAF), Addis Ababa, Ethiopia
| | - T Degefu
- International Crops Research Institute for the Semi-Arid Tropics, Addis Ababa, Ethiopia
| | - K E Giller
- Plant Production Systems Group, Wageningen University and Research, Wageningen, The Netherlands
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Allito BB, Ewusi-Mensah N, Logah V, Hunegnaw DK. Legume-rhizobium specificity effect on nodulation, biomass production and partitioning of faba bean (Vicia faba L.). Sci Rep 2021; 11:3678. [PMID: 33574503 PMCID: PMC7878908 DOI: 10.1038/s41598-021-83235-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Accepted: 01/13/2021] [Indexed: 01/30/2023] Open
Abstract
Greenhouse and multi-location experiments were conducted for two consecutive years to investigate the effects of rhizobium on nodulation, biomass production and partitioning of faba bean. Split-plot in randomized complete block design was used for field experiments. Treatments consisted of six rhizobium strains and three faba bean varieties. Peat carrier-based inoculant of each strain was applied at the rate of 10 g kg-1 seed. Non-inoculated plants without N fertilizer and with N fertilizer served as -N and + N controls, respectively. Data on nodulation, shoot dry weight and root dry weight were collected and analyzed. Inoculation of rhizobium significantly increased nodulation of faba bean under greenhouse and field conditions. Location x strain x variety interaction had significant effects on nodulation, dry matter production and partitioning. Rhizobium inoculation increased nodulation, shoot and root dry weights of faba bean across locations. For example, inoculation with rhizobium strains NSFBR-15 and NSFBR-12 to variety Moti resulted in 206.9 and 99.3% shoot dry weight increase at Abala Gase and Hankomolicha, respectively and 133.3 and 70.7% root dry weight increase on the same variety at the same sites, respectively. Nodulation and biomass production depend on the compatibility between faba bean genotype and rhizobium strain and its interaction with soil bio-physical conditions.
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Affiliation(s)
- Bayou Bunkura Allito
- grid.192268.60000 0000 8953 2273Department of Plant and Horticultural Science, Hawassa University College of Agriculture, Hawassa, Ethiopia
| | - Nana Ewusi-Mensah
- grid.9829.a0000000109466120Department of Crop and Soil Sciences, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | - Vincent Logah
- grid.9829.a0000000109466120Department of Crop and Soil Sciences, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | - Demelash Kefale Hunegnaw
- grid.192268.60000 0000 8953 2273Department of Plant and Horticultural Science, Hawassa University College of Agriculture, Hawassa, Ethiopia
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Abstract
AbstractLegume genotype (GL) x rhizobium genotype (GR) interaction in chickpea was studied using a genetically diverse set of accessions and rhizobium strains in modified Leonard Jars. A subset of effective GL x GR combinations was subsequently evaluated in a pot experiment to identify combinations of chickpea genotypes and rhizobium strains with stable and superior symbiotic performance. A linear mixed model was employed to analyse the occurrence of GL x GR interaction and an additive main effects and multiplicative interaction (AMMI) model was used to study patterns in the performance of genotype-strain combinations. We found statistically significant interaction in jars in terms of symbiotic effectiveness that was entirely due to the inclusion of one of the genotypes, ICC6263. No interaction was found in a subsequent pot experiment. The presence of two genetic groups (Kabuli and Desi genepools) did not affect interaction with Mesorhizobium strains. With the exception of a negative interaction with genotype ICC6263 in the jar experiment, the type strain Mesorhizobium ciceri LMG 14989 outperformed or equalled other strains on all chickpea genotypes in both jar and pot experiments. Similar to earlier reports in common bean, our results suggest that efforts to find more effective strains may be more rewarding than aiming for identification of superior combinations of strains and genotypes.
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Legume-Rhizobium Strain Specificity Enhances Nutrition and Nitrogen Fixation in Faba Bean (Vicia faba L.). AGRONOMY-BASEL 2020. [DOI: 10.3390/agronomy10060826] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
This study reports the effectiveness of some selected rhizobium strains in enhancing nitrogen fixation and nutrient uptake in Vicia faba L. Multi-location field experiments were conducted for two years (2016 and 2017) using a split-plot in randomized complete block design. Treatments comprised six rhizobium strains as the main plot factor and three varieties of Vicia faba as the sub-plot factor. Non-inoculated plants with or without N fertilizer served as +N and −N controls, respectively. Peat carrier-based inoculant of each strain was applied at the rate of 10 g kg−1 seed. Data on nodulation were taken at the late-flowering stage, whereas nitrogen and phosphorus concentrations in plant parts were analyzed at physiological maturity. The total nitrogen difference method was employed to quantify nitrogen fixation. Location x rhizobium strain x variety interaction had a significant effect on nodule dry weight plant−1. Rhizobium strains significantly enhanced nodulation, nitrogen fixation, nutrient uptake and soil nitrogen balance. Inoculation with NSFBR-12 and NSFBR-15 resulted in the highest nitrogen fixed, nutrient uptake and soil nitrogen balance. Vicia faba inoculated with the two top performing strains, NSFBR-12 and NSFBR-15 fixed respectively 87.7% and 85.5% of the total nitrogen uptake. Non-inoculated plants fulfilled proportionately more of the total nitrogen uptake through nitrogen derived from the soil rather than fixed nitrogen. Soil available phosphorus and pH had appreciable influences on nitrogen and phosphorus uptake of inoculated Vicia faba. Inoculation with competitive and effective rhizobium strains can improve soil nitrogen balance, nitrogen fixation and nutrient uptake of Vicia faba.
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Phenotypic, stress tolerance, and plant growth promoting characteristics of rhizobial isolates of grass pea. Int Microbiol 2020; 23:607-618. [PMID: 32495247 DOI: 10.1007/s10123-020-00131-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Revised: 03/27/2020] [Accepted: 04/28/2020] [Indexed: 10/24/2022]
Abstract
Grass pea (Lathyrus sativus L.) is widely cultivated for food and feed in some developing countries including Ethiopia. However, due to its overexaggerated neuro-lathyrism alkaloid causing paralysis of limbs, it failed to attract attention of the research community and is one of the most neglected orphan crops in the world. But, the crop is considered an insurance crop by resource-poor farmers due to its strong abiotic stress tolerance and ability to produce high yields when all other crops fail due to unfavorable environmental conditions. This study was aimed at screening rhizobial isolates of grass pea and evaluating their symbiotic nitrogen fixation efficiency and tolerance to abiotic stresses. Fifty rhizobial isolates collected from grass pea nodules were isolated, screened, and characterized based on standard microbiological methods. The rhizobial isolates showed diversity in nodulation, symbiotic nitrogen fixation, and nutrient utilization. The 16S rRNA gene sequencing of 14 rhizobial isolates showed that two of them were identified as Rhizobium leguminosarum and the remaining twelve as Rhizobium species. Based on their overall performance, strains AAUGR-9, AAUGR-11, and AAUGR-14 that performed top and identified as Rhizobium species were recommended for field trials. This study screened and identified effective and competitive rhizobial isolates enriched with high nitrogen-fixing and abiotic stress tolerant traits, which contributes much to the application of microbial inoculants as alternative to chemical fertilizers.
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Pastor-Bueis R, Sánchez-Cañizares C, James EK, González-Andrés F. Formulation of a Highly Effective Inoculant for Common Bean Based on an Autochthonous Elite Strain of Rhizobium leguminosarum bv. phaseoli, and Genomic-Based Insights Into Its Agronomic Performance. Front Microbiol 2019; 10:2724. [PMID: 31920999 PMCID: PMC6927923 DOI: 10.3389/fmicb.2019.02724] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2019] [Accepted: 11/08/2019] [Indexed: 01/08/2023] Open
Abstract
Common bean is a poor symbiotic N-fixer, with a low response to inoculation owing to its promiscuous nodulation with competitive but inefficient resident rhizobia. Consequently, farmers prefer to fertilize them rather than rely on their capacity for Biological Nitrogen Fixation (BNF). However, when rhizobial inoculants are based on autochthonous strains, they often have superior BNF performance in the field due to their genetic adaptations to the local environment. Nevertheless, there is scant information at the genomic level explaining their superiority or on how their genomes may influence the inoculant performance. This information is especially important in technologically advanced agri-systems like Europe, where environmental concerns and increasingly stringent fertilizer regulations are encouraging a return to the use of rhizobial inoculants, but based upon strains that have been thoroughly characterized in terms of their symbiotic performance and their genetics. The aim of this study was to design an inoculant formulation based on a superior autochthonous strain, Rhizobium leguminosarum bv. phaseoli LCS0306, to assess its performance in the field, and to determine the genomic features contributing to the high effectiveness of its symbiosis with common bean. Plants inoculated with the autochthonous strain LCS0306 fixed significantly more nitrogen than those with the allochthonous strains R. phaseoli ATCC 14482T and R. etli CFN42T, and had grain yield similar to the nitrogen-fertilized controls. Inoculation with LCS0306 was particularly efficacious when formulated with a carrier based upon a mixture of perlite and biochar. Whole genome comparisons revealed no differences in the classical symbiotic genes of strain LCS0306 within the symbiovar phaseoli. However, its symbiotic superior performance might be due to its genomic versatility, as it harbors a large assortment of genes contributing to fitness and competitiveness. It is concluded that inoculation with elite rhizobia formulated with perlite-biochar carriers might constitute a step-change in the sustainable cultivation of common bean in Spanish soils.
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Affiliation(s)
- Raquel Pastor-Bueis
- Institute of Environment, Natural Resources and Biodiversity, Universidad de León, León, Spain
| | | | - Euan K James
- The James Hutton Institute, Dundee, United Kingdom
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Effects of Biofertilizer Produced from Bradyrhizobium and Streptomyces griseoflavus on Plant Growth, Nodulation, Nitrogen Fixation, Nutrient Uptake, and Seed Yield of Mung Bean, Cowpea, and Soybean. AGRONOMY-BASEL 2019. [DOI: 10.3390/agronomy9020077] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The use of biofertilizers is important for sustainable agriculture, and the use of nodule bacteria and endophytic actinomycetes is an attractive way to enhance plant growth and yield. This study tested the effects of a biofertilizer produced from Bradyrhizobium strains and Streptomyces griseoflavus on leguminous, cereal, and vegetable crops. Nitrogen fixation was measured using the acetylene reduction assay. Under N-limited or N-supplemented conditions, the biofertilizer significantly promoted the shoot and root growth of mung bean, cowpea, and soybean compared with the control. Therefore, the biofertilizer used in this study was effective in mung bean, cowpea, and soybean regardless of N application. In this study, significant increments in plant growth, nodulation, nitrogen fixation, nitrogen, phosphorus, and potassium (NPK) uptake, and seed yield were found in mung beans and soybeans. Therefore, Bradyrhizobium japonicum SAY3-7 plus Bradyrhizobium elkanii BLY3-8 and Streptomyces griseoflavus are effective bacteria that can be used together as biofertilizer for the production of economically important leguminous crops, especially soybean and mung bean. The biofertilizer produced from Bradyrhizobium and S. griseoflavus P4 will be useful for both soybean and mung bean production.
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Koskey G, Mburu SW, Njeru EM, Kimiti JM, Ombori O, Maingi JM. Potential of Native Rhizobia in Enhancing Nitrogen Fixation and Yields of Climbing Beans ( Phaseolus vulgaris L.) in Contrasting Environments of Eastern Kenya. FRONTIERS IN PLANT SCIENCE 2017; 8:443. [PMID: 28408912 PMCID: PMC5374200 DOI: 10.3389/fpls.2017.00443] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2016] [Accepted: 03/14/2017] [Indexed: 06/07/2023]
Abstract
Climbing bean (Phaseolus vulgaris L.) production in Kenya is greatly undermined by low soil fertility, especially in agriculturally prolific areas. The use of effective native rhizobia inoculants to promote nitrogen fixation could be beneficial in climbing bean production. In this study, we carried out greenhouse and field experiments to evaluate symbiotic efficiency, compare the effect of native rhizobia and commercial inoculant on nodulation, growth and yield parameters of mid-altitude climbing bean (MAC 13 and MAC 64) varieties. The greenhouse experiment included nine native rhizobia isolates, a consortium of native isolates, commercial inoculant Biofix, a mixture of native isolates + Biofix, nitrogen treated control and a non-inoculated control. In the field experiments, the treatments included the best effective native rhizobia isolate ELM3, a consortium of native isolates, a commercial inoculant Biofix, a mixture of native isolates + Biofix, and a non-inoculated control. Remarkably, four native rhizobia isolates ELM3, ELM4, ELM5, and ELM8 showed higher symbiotic efficiencies compared to the Biofix. Interestingly, there was no significant difference in symbiotic efficiency between the two climbing bean varieties. Field results demonstrated a significant improvement in nodule dry weight and seed yields of MAC 13 and MAC 64 climbing bean varieties upon rhizobia inoculation when compared to the non-inoculated controls. Inoculation with ELM3 isolate resulted to the highest seed yield of 4,397.75 kg ha-1, indicating 89% increase over non-inoculated control (2,334.81 kg ha-1) and 30% increase over Biofix (3,698.79 kg ha-1). Farm site significantly influenced nodule dry weight and seed yields. This study, therefore, revealed the potential of native rhizobia isolates to enhance delivery of agroecosystem services including nitrogen fixation and bean production. Further characterization and mapping of the native isolates will be imperative in development of effective and affordable commercial inoculants.
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Affiliation(s)
- Gilbert Koskey
- Department of Microbiology, Kenyatta UniversityNairobi, Kenya
| | - Simon W. Mburu
- Department of Microbiology, Kenyatta UniversityNairobi, Kenya
| | | | - Jacinta M. Kimiti
- Department of Forestry and Land Resources Management, South Eastern Kenya UniversityKitui, Kenya
| | - Omwoyo Ombori
- Department of Plant Sciences, Kenyatta UniversityNairobi, Kenya
| | - John M. Maingi
- Department of Microbiology, Kenyatta UniversityNairobi, Kenya
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Improvement of Faba Bean Yield Using Rhizobium/Agrobacterium Inoculant in Low-Fertility Sandy Soil. AGRONOMY-BASEL 2017. [DOI: 10.3390/agronomy7010002] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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17
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Wondwosen T, Endalkachew WM, Fran W. Response of chickpea (Cicer arietinum L.) to inoculation with native and exotic Mesorhizobium strains in Southern Ethiopia. ACTA ACUST UNITED AC 2016. [DOI: 10.5897/ajb2015.15060] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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