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Reyer H, Honerlagen H, Oster M, Ponsuksili S, Kuhla B, Wimmers K. Multi-tissue gene expression profiling of cows with a genetic predisposition for low and high milk urea levels. Anim Biotechnol 2024; 35:2322542. [PMID: 38426941 DOI: 10.1080/10495398.2024.2322542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2024]
Abstract
Milk urea (MU) concentration is proposed as an indicator trait for breeding toward reduced nitrogen (N) emissions and leaching in dairy. We selected 20 German Holstein cows based on MU breeding values, with 10 cows each having low (LMUg) and high (HMUg) MU genetic predisposition. Using RNA-seq, we characterized these cows to unravel molecular pathways governing post-absorptive body N pools focusing on renal filtration and reabsorption of nitrogenous compounds, hepatic urea formation and mammary gland N excretion. While we observed minor adjustments in cellular energy metabolism in different tissues associated with different MU levels, no transcriptional differences in liver ammonia detoxification were detected, despite significant differences in MU between the groups. Differential expression of AQP3 and SLC38A2 in the kidney provides evidence for higher urea concentration in the collecting duct of LMU cows than HMU cows. The mammary gland exhibited the most significant differences, particularly in tricarboxylic acid (TCA) cycle genes, amino acid transport, tRNA binding, and casein synthesis. These findings suggest that selecting for lower MU could lead to altered urinary urea (UU) handling and changes in milk protein synthesis. However, given the genetic variability in N metabolism components, the long-term effectiveness of MU-based selection in reducing N emissions remains uncertain.
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Affiliation(s)
- Henry Reyer
- Institute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany
| | - Hanne Honerlagen
- Institute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany
- Animal Breeding and Genomics, Wageningen University and Research, Wageningen, The Netherlands
| | - Michael Oster
- Institute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany
| | - Siriluck Ponsuksili
- Institute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany
| | - Björn Kuhla
- Institute of Nutritional Physiology 'Oskar Kellner', Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany
| | - Klaus Wimmers
- Institute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany
- Faculty of Agriculture and Environmental Sciences, Professorship of Animal Breeding and Genetics, University of Rostock, Rostock, Germany
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2
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Atashi H, Chen Y, Vanderick S, Hubin X, Gengler N. Single-step genome-wide association analyses for milk urea concentration in Walloon Holstein cows. J Dairy Sci 2024; 107:3020-3031. [PMID: 38056570 DOI: 10.3168/jds.2023-23902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Accepted: 11/07/2023] [Indexed: 12/08/2023]
Abstract
The aims of this study were to conduct a single-step genome-wide association to identify genomic regions associated with milk urea (MU) and to estimate genetic correlations between MU and milk yield (MY), milk composition (calcium content [CC], fat percentage [FP], protein percentage [PP], and casein percentage [CNP]), and cheese-making properties (CMP; coagulation time [CT], curd firmness after 30 min from rennet addition [a30], and titratable acidity [TA]). The used data have been collected from 2015 to 2020 on 78,073 first-parity (485,218 test-day records) and 48,766 second-parity (284,942 test-day records) Holstein cows distributed in 671 herds in the Walloon Region of Belgium. Data of 565,533 SNP located on 29 BTA of 6,617 animals (1,712 males) were used. Random regression test-day models were used to estimate genetic parameters through the Bayesian Gibbs sampling method. The SNP solutions were estimated using a single-step genomic BLUP approach. The proportion of the total additive genetic variance explained by windows of 50 consecutive SNPs (with an average size of ∼216 kb) was calculated, and the top-3 genomic regions explaining the largest rate of the genetic variance were considered promising regions and used to identify potential candidate genes. Mean (SD) MU was 25.38 (8.02) mg/dL and 25.03 (8.06) mg/dL in the first and second lactation, respectively. Mean heritability estimates for daily MU were 0.21 and 0.23 for the first and second lactation, respectively. The genetic correlations estimated between MU and MY, milk composition, and CMP were quite low (ranged from -0.10 [CC] to 0.10 [TA] and -0.05 [CT] to 0.13 [TA] for the first and second lactations, respectively). The top-3 regions associated with MU were located from 80.61 to 80.74 Mb on BTA6, 103.26 to 103.41 Mb on BTA11, and 1.59 to 2.15 Mb on BTA14. Genes including KCNT1, MROH1, SHARPIN, TSSK5, CPSF1, HSF1, TONSL, DGAT1, SCX, and MAF1 were identified as positional candidate genes for MU. The findings of this study can be used for a better understanding of the genomic architecture underlying MU in Holstein cattle.
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Affiliation(s)
- H Atashi
- TERRA Teaching and Research Center, Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium; Department of Animal Science, Shiraz University, 71441-13131 Shiraz, Iran.
| | - Y Chen
- TERRA Teaching and Research Center, Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium
| | - S Vanderick
- TERRA Teaching and Research Center, Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium
| | - X Hubin
- Elevéo asbl Awé Group, 5590 Ciney, Belgium
| | - N Gengler
- TERRA Teaching and Research Center, Gembloux Agro-Bio Tech, University of Liège, 5030 Gembloux, Belgium
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Tavernier E, Gormley IC, Delaby L, O'Donovan M, Berry DP. Genetic covariance components for measures of nitrogen utilization in grazing dairy cows. J Dairy Sci 2024; 107:2231-2240. [PMID: 37939837 DOI: 10.3168/jds.2023-24117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Accepted: 10/19/2023] [Indexed: 11/10/2023]
Abstract
Improved nitrogen utilization of dairy production systems should improve not only the economic output of the systems but also the environmental metrics. One strategy to improve efficiency is through breeding programs. Improving a trait through breeding is conditional on the presence of exploitable genetic variability. Using a database of 1,291 deeply phenotyped grazing dairy cows, the genetic variability for 2 definitions of nitrogen utilization was studied: nitrogen use efficiency (i.e., nitrogen output in milk and meat divided by nitrogen available) and nitrogen balance (i.e., nitrogen available less nitrogen output in milk and meat). Variance components for both variables were estimated using animal repeatability linear mixed models. Genetic variability was detected for both nitrogen utilization metrics, even though their heritability estimates were low (<0.10). Validation of genetic evaluations revealed that animals divergent for nitrogen use efficiency or nitrogen balance indeed differed phenotypically, further demonstrating that breeding for improved nitrogen efficiency should result in a shift in the population mean toward better efficiency. Nitrogen use efficiency and nitrogen balance were not genetically correlated with each other (<|0.28|), and neither metric was correlated with milk urea nitrogen (<|0.12|). Nitrogen balance was unfavorably correlated with milk yield, showing the importance of including the nitrogen utilization metrics in a breeding index to improve nitrogen utilization without negatively impacting milk yield. In conclusion, improvement of nitrogen utilization through breeding is possible, even if more nitrogen utilization phenotypic data need to be collected to improve the selection accuracy considering the low heritability estimates.
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Affiliation(s)
- E Tavernier
- School of Mathematics and Statistics, University College Dublin D04 V1W8, Ireland; Department of Animal Bioscience, Animal and Grassland Research and Innovation Centre, Teagasc, Moorepark, P61 C996 Fermoy, Co. Cork, Ireland
| | - I C Gormley
- School of Mathematics and Statistics, University College Dublin D04 V1W8, Ireland
| | - L Delaby
- INRAE, Institut Agro, UMR Physiologie, Environnement et Génétique pour l'Animal et les Systèmes d'Elevage, 35590 Saint-Gilles, France
| | - M O'Donovan
- Department of Animal Bioscience, Animal and Grassland Research and Innovation Centre, Teagasc, Moorepark, P61 C996 Fermoy, Co. Cork, Ireland
| | - D P Berry
- Department of Animal Bioscience, Animal and Grassland Research and Innovation Centre, Teagasc, Moorepark, P61 C996 Fermoy, Co. Cork, Ireland.
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Marshall CJ, Garrett K, Van Vliet S, Beck MR, Gregorini P. Dietary and Animal Strategies to Reduce the Environmental Impact of Pastoral Dairy Systems Result in Altered Nutraceutical Profiles in Milk. Animals (Basel) 2022; 12:ani12212994. [PMID: 36359120 PMCID: PMC9657149 DOI: 10.3390/ani12212994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Revised: 10/14/2022] [Accepted: 10/24/2022] [Indexed: 11/06/2022] Open
Abstract
The objective of this study was to evaluate and provide further insights into how dairy cows genetically divergent for milk urea N breeding values [MUNBV, high (2.21 ± 0.21) vs. low (−1.16 ± 0.21); µ ± SEM], consuming either fresh cut Plantain (Plantago lanceolata L., PL) or Ryegrass (Lolium perenne L., RG) herbage, impacted the nutraceutical profile of whole milk by investigating amino and fatty acid composition and applying metabolomic profiling techniques. Both diet and MUNBV, and their interaction term, were found to affect the relative abundance of alanine, glycine, histidine, and phenylalanine in the milk (p < 0.05), but their minor absolute differences (up to ~0.13%) would not be considered biologically relevant. Differences were also detected in the fatty acid profile based on MUNBV and diet (p < 0.05) with low MUNBV cows having a greater content of total unsaturated fatty acids (+16%) compared to high MUNBV cows and cows consuming PL having greater content of polyunsaturated fatty acids (+92%), omega 3 (+101%) and 6 (+113%) compared to RG. Differences in the metabolomic profile of the milk were also detected for both MUNBV and dietary treatments. Low MUNBV cows were found to have greater abundances of choline phosphate, phosphorylethanolamine, N-acetylglucosamine 1-phosphate, and 2-dimethylaminoethanol (p < 0.05). High MUNBV cows had a greater abundance of methionine sulfoxide, malate, 1,5-anhydroglucitol (1,5-AG), glycerate, arabitol/xylitol, 3-hydroxy-3-methylglutarate, 5-hydroxylysine and cystine (p < 0.05). Large differences (p < 0.05) were also detected as a result of diet with PL diets having greater abundances of the phytochemicals 4-acetylcatechol sulfate, 4-methylcatechol sulfate, and p-cresol glucuronide whilst RG diets had greater abundances of 2,6-dihydroxybenzoic acid, 2-acetamidophenol sulfate, and 2-hydroxyhippurate. The results of this study indicate the potential to alter the nutraceutical value of milk from dietary and genetic strategies that have been previously demonstrated to reduce environmental impact.
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Affiliation(s)
- Cameron Joel Marshall
- Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln 7647, New Zealand
- Correspondence:
| | - Konagh Garrett
- Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln 7647, New Zealand
| | - Stephan Van Vliet
- Department of Nutrition, Dietetics, and Food Sciences, Utah State University, Logan, UT 84322, USA
| | - Matthew Raymond Beck
- Livestock Nutrient Management Research Unit, The Agricultural Research Service, The United States Department of Agriculture (USDA-ARS), 300 Simmons Drive, Unit 10, Bushland, TX 79012, USA
| | - Pablo Gregorini
- Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln 7647, New Zealand
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Damato A, Vianello F, Novelli E, Balzan S, Gianesella M, Giaretta E, Gabai G. Comprehensive Review on the Interactions of Clay Minerals With Animal Physiology and Production. Front Vet Sci 2022; 9:889612. [PMID: 35619608 PMCID: PMC9127995 DOI: 10.3389/fvets.2022.889612] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Accepted: 04/11/2022] [Indexed: 11/13/2022] Open
Abstract
Clay minerals are naturally occurring rock and soil materials primarily composed of fine-grained aluminosilicate minerals, characterized by high hygroscopicity. In animal production, clays are often mixed with feed and, due to their high binding capacity towards organic molecules, used to limit animal absorption of feed contaminants, such as mycotoxins and other toxicants. Binding capacity of clays is not specific and these minerals can form complexes with different compounds, such as nutrients and pharmaceuticals, thus possibly affecting the intestinal absorption of important substances. Indeed, clays cannot be considered a completely inert feed additive, as they can interfere with gastro-intestinal (GI) metabolism, with possible consequences on animal physiology. Moreover, clays may contain impurities, constituted of inorganic micronutrients and/or toxic trace elements, and their ingestion can affect animal health. Furthermore, clays may also have effects on the GI mucosa, possibly modifying nutrient digestibility and animal microbiome. Finally, clays may directly interact with GI cells and, depending on their mineral grain size, shape, superficial charge and hydrophilicity, can elicit an inflammatory response. As in the near future due to climate change the presence of mycotoxins in feedstuffs will probably become a major problem, the use of clays in feedstuff, given their physico-chemical properties, low cost, apparent low toxicity and eco-compatibility, is expected to increase. The present review focuses on the characteristics and properties of clays as feed additives, evidencing pros and cons. Aims of future studies are suggested, evidencing that, in particular, possible interferences of these minerals with animal microbiome, nutrient absorption and drug delivery should be assessed. Finally, the fate of clay particles during their transit within the GI system and their long-term administration/accumulation should be clarified.
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Affiliation(s)
- Anna Damato
- Department of Comparative Biomedicine and Food Science, University of Padua, Padua, Italy
| | - Fabio Vianello
- Department of Comparative Biomedicine and Food Science, University of Padua, Padua, Italy
| | - Enrico Novelli
- Department of Comparative Biomedicine and Food Science, University of Padua, Padua, Italy
| | - Stefania Balzan
- Department of Comparative Biomedicine and Food Science, University of Padua, Padua, Italy
| | - Matteo Gianesella
- Department of Animal Medicine, Production and Health, University of Padua, Padua, Italy
| | - Elisa Giaretta
- Department of Comparative Biomedicine and Food Science, University of Padua, Padua, Italy
- *Correspondence: Elisa Giaretta
| | - Gianfranco Gabai
- Department of Comparative Biomedicine and Food Science, University of Padua, Padua, Italy
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Marshall C, Beck M, Garrett K, Barrell G, Al-Marashdeh O, Gregorini P. Urine and fecal excretion patterns of dairy cows divergent for milk urea nitrogen breeding values consuming either a plantain or ryegrass diet. J Dairy Sci 2022; 105:4218-4236. [DOI: 10.3168/jds.2021-21490] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Accepted: 01/31/2022] [Indexed: 01/25/2023]
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Estimation of Nitrogen Use Efficiency for Ryegrass-Fed Dairy Cows: Model Development Using Diet- and Animal-Based Proxy Measures. DAIRY 2021. [DOI: 10.3390/dairy2030035] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
This study aimed to identify suitable predictors of nitrogen (N) use efficiency (NUE; milk N/N intake) for cows that differed in breeds and were fed with ryegrass pasture, using existing data from the scientific literature. Data from 16 studies were used to develop models based on the relationships between NUE and dietary and animal-based factors. Data from a further 10 studies were used for model validation. Milk urea N (MUN) and dietary water-soluble carbohydrate-to-crudeprotein ratio (WSC/CP) were the best and most practical animal- and diet-based proxies to predict NUE. The results indicate that it might be necessary to adopt separate models for different breeds when using WSC/CP to predict NUE but not when using MUN.
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van den Berg I, Ho PN, Haile-Mariam M, Beatson PR, O'Connor E, Pryce JE. Genetic parameters of blood urea nitrogen and milk urea nitrogen concentration in dairy cattle managed in pasture-based production systems of New Zealand and Australia. ANIMAL PRODUCTION SCIENCE 2021. [DOI: 10.1071/an21049] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Context
Urinary nitrogen excretion by grazing cattle causes environmental pollution. Selecting for cows with a lower concentration of urinary nitrogen excretion may reduce the environmental impact. While urinary nitrogen excretion is difficult to measure, blood urea nitrogen (BUN), mid-infrared spectroscopy (MIR)-predicted BUN (MBUN), which is predicted from MIR spectra measured on milk samples, and milk urea nitrogen (MUN) are potential indicator traits. Australia and New Zealand have increasing datasets of cows with urea records, with 18 120 and 15 754 cows with urea records in Australia and New Zealand respectively. A collaboration between Australia and New Zealand could further increase the size of the dataset by sharing data.
Aims
Our aims were to estimate genetic parameters for urea traits within country, and genetic correlations between countries to gauge the benefit of having a joint reference population for genomic prediction of an indicator trait that is potentially suitable for selection to reduce urinary nitrogen excretion for both countries.
Methods
Genetic parameters were estimated within country (Australia and New Zealand) in Holstein, Jersey and a multibreed population, for BUN, MBUN and MUN in Australia and MUN in New Zealand, using high-density genotypes. Genetic correlations were also estimated between the urea traits recorded in Australia and MUN in New Zealand. Analyses used the first record available for each cow or within days-in-milk (DIM) intervals.
Key results
Heritabilities ranged from 0.08 to 0.32 for the various urea traits. Higher heritabilities were obtained for Jersey than for Holstein, and for the New Zealand cows than for the Australian cows. While urea traits were highly correlated within Australia (0.71–0.94), genetic correlations between Australia and New Zealand were small to moderate (0.08–0.58).
Conclusions
Our results showed that the heritability for urea traits differs among trait, breed, and country. While urea traits are highly correlated within country, genetic correlations between urea traits in Australia and MUN in New Zealand were only low to moderate.
Implications
Further study is required to identify the underlying causes of the difference in heritabilities observed, to compare the accuracies of different reference populations, and to estimate genetic correlations between urea traits and other traits such as fertility and feed intake. Larger datasets may help estimate genetic correlations more accurately between countries.
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