Prediction of Tail Biting Events in Finisher Pigs from Automatically Recorded Sensor Data

Detecting tail biters by monitoring pig screams in weaning pigs

Early identification of tail biting and intervention are necessary to reduce tail lesions and their impact on animal health and welfare. Removal of biters has become an effective intervention strategy, but finding them can be difficult and time-consuming. The aim of this study was to investigate whether tail biting and, in particular, individual biters could be identified by detecting pig screams in audio recordings. The study included 288 undocked weaner pigs housed in six pens in two batches. Once a tail biter (n = 7) was identified by visual inspection in the stable and removed by the farm staff, the previous days of video and audio recordings were analyzed for pig screams (sudden increase in loudness with frequencies above 1 kHz) and tail biting events until no biting before the removal was observed anymore. In total, 2893 screams were detected in four pens where tail biting occurred. Of these screams, 52.9% were caused by tail biting in the observed pen, 25.6% originated from other pens, 8.8% were not assignable, and 12.7% occurred due to other reasons. In case of a tail biting event, screams were assigned individually to biter and victim pigs. Based on the audio analysis, biters were identified between one and nine days prior to their removal from the pen after visual inspection. Screams were detected earlier than the increase in hanging tails and could therefore be favored as an early warning indicator. Analyzing animal vocalization has potential for monitoring and early detection of tail biting events. In combination with individual marks and automatic analysis algorithms, biters could be identified and tail biting efficiently reduced. In this way, biters can be removed earlier to increase animal health and welfare.

Farmers' Perspectives of the Benefits and Risks in Precision Livestock Farming in the EU Pig and Poultry Sectors

More efficient livestock production systems are necessary, considering that only 41% of global meat demand will be met by 2050. Moreover, the COVID-19 pandemic crisis has clearly illustrated the necessity of building sustainable and stable agri-food systems. Precision Livestock Farming (PLF) offers the continuous capacity of agriculture to contribute to overall human and animal welfare by providing sufficient goods and services through the application of technical innovations like digitalization. However, adopting new technologies is a challenging issue for farmers, extension services, agri-business and policymakers. We present a review of operational concepts and technological solutions in the pig and poultry sectors, as reflected in 41 and 16 European projects from the last decade, respectively. The European trend of increasing broiler-meat production, which is soon to outpace pork, stresses the need for more outstanding research efforts in the poultry industry. We further present a review of farmers' attitudes and obstacles to the acceptance of technological solutions in the pig and poultry sectors using examples and lessons learned from recent European projects. Despite the low resonance at the research level, the investigation of farmers' attitudes and concerns regarding the acceptance of technological solutions in the livestock sector should be incorporated into any technological development.

Automatic monitoring and detection of tail-biting behavior in groups of pigs using video-based deep learning methods

Automated monitoring of pigs for timely detection of changes in behavior and the onset of tail biting might enable farmers to take immediate management actions, and thus decrease health and welfare issues on-farm. Our goal was to develop computer vision-based methods to detect tail biting in pigs using a convolutional neural network (CNN) to extract spatial information, combined with secondary networks accounting for temporal information. Two secondary frameworks were utilized, being a long short-term memory (LSTM) network applied to sequences of image features (CNN-LSTM), and a CNN applied to image representations of sequences (CNN-CNN). To achieve our goal, this study aimed to answer the following questions: (a) Can the methods detect tail biting from video recordings of entire pens? (b) Can we utilize principal component analyses (PCA) to reduce the dimensionality of the feature vector and only use relevant principal components (PC)? (c) Is there potential to increase performance in optimizing the threshold for class separation of the predicted probabilities of the outcome? (d) What is the performance of the methods with respect to each other? The study utilized one-hour video recordings of 10 pens with pigs prior to weaning, containing a total of 208 tail-biting events of varying lengths. The pre-trained VGG-16 was used to extract spatial features from the data, which were subsequently pre-processed and divided into train/test sets before input to the LSTM/CNN. The performance of the methods regarding data pre-processing and model building was systematically compared using cross-validation. Final models were run with optimal settings and evaluated on an independent test-set. The proposed methods detected tail biting with a major-mean accuracy (MMA) of 71.3 and 64.7% for the CNN-LSTM and the CNN-CNN network, respectively. Applying PCA and using a limited number of PCs significantly increased the performance of both methods, while optimizing the threshold for class separation did result in a consistent but not significant increase of the performance. Both methods can detect tail biting from video data, but the CNN-LSTM was superior in generalizing when evaluated on new data, i.e., data not used for training the models, compared to the CNN-CNN method.

Machine learning algorithms can predict tail biting outbreaks in pigs using feeding behaviour records

Tail biting is a damaging behaviour that impacts the welfare and health of pigs. Early detection of precursor signs of tail biting provides the opportunity to take preventive measures, thus avoiding the occurrence of the tail biting event. This study aimed to build a machine-learning algorithm for real-time detection of upcoming tail biting outbreaks, using feeding behaviour data recorded by an electronic feeder. Prediction capacities of seven machine learning algorithms (Generalized Linear Model with Stepwise Feature Selection, random forest, Support Vector Machines with Radial Basis Function Kernel, Bayesian Generalized Linear Model, Neural network, K-nearest neighbour, and Partial Least Squares Discriminant Analysis) were evaluated from daily feeding data collected from 65 pens originating from two herds of grower-finisher pigs (25-100kg), in which 27 tail biting events occurred. Data were divided into training and testing data in two different ways, either by randomly splitting data into 75% (training set) and 25% (testing set), or by randomly selecting pens to constitute the testing set. In the first data splitting, the model is regularly updated with previous data from the pen, whereas in the second data splitting, the model tries to predict for a pen that it has never seen before. The K-nearest neighbour algorithm was able to predict 78% of the upcoming events with an accuracy of 96%, when predicting events in pens for which it had previous data. Our results indicate that machine learning models can be considered for implementation into automatic feeder systems for real-time prediction of tail biting events.

Identifying Early Indicators of Tail Biting in Pigs by Variable Selection Using Partial Least Squares Regression

This study examined relevant variables for predicting the prevalence of pigs with a tail lesion in rearing (REA) and fattening (FAT). Tail lesions were recorded at two scoring days a week in six pens in both REA (10 batches, 840 scoring days) and FAT (5 batches, 624 scoring days). To select the variables that best explain the variation within the prevalence of pigs with a tail lesion, partial least squares regression models were used with the variable importance in projection (VIP) and regression coefficients (β) as selection criteria. In REA, five factors were extracted explaining 60.6% of the dependent variable's variance, whereas in FAT five extracted factors explained 62.4% of the dependent variable's variance. According to VIP and β, seven variables were selected in REA and six in FAT with the tail posture being the most important variable. In addition, skin lesions, treatment index in the suckling phase, water consumption (mean), activity time (mean; CV) and exhaust air rate (CV) were selected in REA. In FAT, additional musculoskeletal system issues, activity time (mean; CV) and exhaust air rate (mean; CV) were selected according to VIP and β. The selected variables indicate which variables should be collected in the stable to e.g., predict tail biting.

Use of drinkers by finisher pigs depend on drinker location, pig age, time of day, stocking density and tail damage

Water is a vital nutrient for mammals, including the pig. Despite this, the use of drinkers and water have not yet been explicitly quantified across the finisher period. The current study aimed at gaining greater insight into finisher pigs' drinker use and its relation to drinker location, age, time of day, stocking density, enrichment provision and tail damage. The experiment included 110 pens of finisher pigs over a 9-week period, with two drinker cups per pen. Pens had a stocking density of either 0.73 m²/pig (n = 54 pens, 18 pigs per pen) or 1.21 m²/pig (n = 56 pens, 11 pigs per pen), were either provided with straw (n = 54, 150 g per pig and day) or not (n = 56), and had pigs with either undocked (n = 50) or docked tails (n = 60). Drinker use was recorded automatically by water-flow meters and summed to L and number of activations per hour and pig. Pens never experiencing a tail damage event (at least one pig in the pen with a bleeding tail) were used to investigate the normal drinker use of finisher pigs (n = 56). The water use of pigs increased from 3.7 to 8.2 L per pig and day during the 9 weeks, and this increase was mainly seen during the two large peaks of the diurnal pattern within the pigs' active period (06:00-18:00 h). No such increase was seen in the activation frequency at average 50 activations per pig and day. A decrease in stocking density increased both water use and activation frequency during the active period, suggesting that pigs at the standard space allowance and pig:drinker ratio could be restricted in their access to the drinking cups. The pigs also seemed to prefer to use the drinking cup closest to the feeder. Water use and activation frequency did not change the last 3 days prior to an event of tail damage, but general differences were seen between pens with and without a tail damage event. The current results may explain the success of previous studies in classifying tail damage pens from pens without tail damage using sensor data on drinker use.

Water consumption and wastage behaviour in pigs: implications for antimicrobial administration and stewardship

Daily water use and wastage patterns of pigs have major effects on the efficacy of in-water antimicrobial dosing events when conducted for metaphylaxis or to treat clinical disease. However, daily water use and wastage patterns of pigs are not routinely quantified on farms and are not well understood. We conducted a prospective, observational 27-day study of the daily water use and wastage patterns of a pen group of 15 finisher pigs reared in a farm building. We found that the group of pigs wasted a median of 36.5% of the water used per day. We developed models of the patterns of water used and wasted by pigs over each 24-h period using a Bayesian statistical method with the brm() function in the brms package. Both patterns were uni-modal, peaking at 1400-1700, and closely aligned. Wastage was slightly greater during hours of higher water use. We have shown that it is feasible to quantify the water use and wastage patterns of pigs in farm buildings using a system that records and aggregates data, and analyses them using hierarchical generalised additive models. This system could support more efficacious in-water antimicrobial dosing on farms, and better antimicrobial stewardship, by helping to reduce the quantities of antimicrobials used and disseminated into the environment.

Effect of De-noising by Wavelet Filtering and Data Augmentation by Borderline SMOTE on the Classification of Imbalanced Datasets of Pig Behavior

Classification of imbalanced datasets of animal behavior has been one of the top challenges in the field of animal science. An imbalanced dataset will lead many classification algorithms to being less effective and result in a higher misclassification rate for the minority classes. The aim of this study was to assess a method for addressing the problem of imbalanced datasets of pigs' behavior by using an over-sampling method, namely Borderline-SMOTE. The pigs' activity was measured using a triaxial accelerometer, which was mounted on the back of the pigs. Wavelet filtering and Borderline-SMOTE were both applied as methods to pre-process the dataset. A multilayer feed-forward neural network was trained and validated with 21 input features to classify four pig activities: lying, standing, walking, and exploring. The results showed that wavelet filtering and Borderline-SMOTE both lead to improved performance. Furthermore, Borderline-SMOTE yielded greater improvements in classification performance than an alternative method for balancing the training data, namely random under-sampling, which is commonly used in animal science research. However, the overall performance was not adequate to satisfy the research needs in this field and to address the common but urgent problem of imbalanced behavior dataset.

A Systematic Review on Validated Precision Livestock Farming Technologies for Pig Production and Its Potential to Assess Animal Welfare

Several precision livestock farming (PLF) technologies, conceived for optimizing farming processes, are developed to detect the physical and behavioral changes of animals continuously and in real-time. The aim of this review was to explore the capacity of existing PLF technologies to contribute to the assessment of pig welfare. In a web search for commercially available PLF for pigs, 83 technologies were identified. A literature search was conducted, following systematic review guidelines (PRISMA), to identify studies on the validation of sensor technologies for assessing animal-based welfare indicators. Two validation levels were defined: internal (evaluation during system building within the same population that were used for system building) and external (evaluation on a different population than during system building). From 2,463 articles found, 111 were selected, which validated some PLF that could be applied to the assessment of animal-based welfare indicators of pigs (7% classified as external, and 93% as internal validation). From our list of commercially available PLF technologies, only 5% had been externally validated. The more often validated technologies were vision-based solutions (n = 45), followed by load-cells (n = 28; feeders and drinkers, force plates and scales), accelerometers (n = 14) and microphones (n = 14), thermal cameras (n = 10), photoelectric sensors (n = 5), radio-frequency identification (RFID) for tracking (n = 2), infrared thermometers (n = 1), and pyrometer (n = 1). Externally validated technologies were photoelectric sensors (n = 2), thermal cameras (n = 2), microphone (n = 1), load-cells (n = 1), RFID (n = 1), and pyrometer (n = 1). Measured traits included activity and posture-related behavior, feeding and drinking, other behavior, physical condition, and health. In conclusion, existing PLF technologies are potential tools for on-farm animal welfare assessment in pig production. However, validation studies are lacking for an important percentage of market available tools, and in particular research and development need to focus on identifying the feature candidates of the measures (e.g., deviations from diurnal pattern, threshold levels) that are valid signals of either negative or positive animal welfare. An important gap identified are the lack of technologies to assess affective states (both positive and negative states).

Information Technologies for Welfare Monitoring in Pigs and Their Relation to Welfare Quality®

The assessment of animal welfare on-farm is important to ensure that current welfare standards are followed. The current manual assessment proposed by Welfare Quality® (WQ), although being an essential tool, is only a point-estimate in time, is very time consuming to perform, only evaluates a subset of the animals, and is performed by the subjective human. Automation of the assessment through information technologies (ITs) could provide a continuous objective assessment in real-time on all animals. The aim of the current systematic review was to identify ITs developed for welfare monitoring within the pig production chain, evaluate the ITs developmental stage and evaluate how these ITs can be related to the WQ assessment protocol. The systematic literature search identified 101 publications investigating the development of ITs for welfare monitoring within the pig production chain. The systematic literature analysis revealed that the research field is still young with 97% being published within the last 20 years, and still growing with 63% being published between 2016 and mid-2020. In addition, most focus is still on the development of ITs (sensors) for the extraction and analysis of variables related to pig welfare; this being the first step in the development of a precision livestock farming system for welfare monitoring. The majority of the studies have used sensor technologies detached from the animals such as cameras and microphones, and most investigated animal biomarkers over environmental biomarkers with a clear focus on behavioural biomarkers over physiological biomarkers. ITs intended for many different welfare issues have been studied, although a high number of publications did not specify a welfare issue and instead studied a general biomarker such as activity, feeding behaviour and drinking behaviour. The ‘good feeding’ principle of the WQ assessment protocol was the best represented with ITs for real-time on-farm welfare assessment, while for the other principles only few of the included WQ measures are so far covered. No ITs have yet been developed for the ‘Comfort around resting’ and the ‘Good human-animal relationship’ criteria. Thus, the potential to develop ITs for welfare assessment within the pig production is high and much work is still needed to end up with a remote solution for welfare assessment on-farm and in real-time.

Understanding German Pig Farmers' Intentions to Design and Construct Pig Housing for the Improvement of Animal Welfare

Improving farm animal welfare requires modifications to the behavior of many stakeholders. Investments in more animal-friendly barns to improve animal welfare have already been made by some farmers. However, more farmers must be persuaded to modernize their barns. The marketing of animal-friendly products is the responsibility of retailers, and consumers have to purchase these products. Currently, little is known about what (and how) underlying psychological factors influence a farmer's intention to construct pig housing to improve farm animal welfare. Pig farmers in Germany were questioned via an online questionnaire in May 2020 (n = 424). Based on the Theory of Planned Behavior (TPB), partial least squares path modeling was used. The constructs: attitude, subjective norm, direct and indirect experience associated with the construction of pig housing substantially influenced the farmers' behaviors. As expected, the impact of perceived behavioral control on intention was negative but was also very low and only slightly significant. Contrary to expectations, the perceived behavioral control had no significant influence on farmers' behaviors. Pig farmers who have already rebuilt their pigs' housing should be motivated to share their experiences to influence their colleagues' intentions to construct. Our results will encourage policy makers to consider the important role of the different psychological and intrinsic factors influencing pig farmers. Thus, the sustainability of pig farming can be improved by giving politicians a better understanding of farmers´ behaviors.

Review: Precision livestock farming: building 'digital representations' to bring the animals closer to the farmer

Economic pressures continue to mount on modern-day livestock farmers, forcing them to increase herds sizes in order to be commercially viable. The natural consequence of this is to drive the farmer and the animal further apart. However, closer attention to the animal not only positively impacts animal welfare and health but can also increase the capacity of the farmer to achieve a more sustainable production. State-of-the-art precision livestock farming (PLF) technology is one such means of bringing the animals closer to the farmer in the facing of expanding systems. Contrary to some current opinions, it can offer an alternative philosophy to 'farming by numbers'. This review addresses the key technology-oriented approaches to monitor animals and demonstrates how image and sound analyses can be used to build 'digital representations' of animals by giving an overview of some of the core concepts of PLF tool development and value discovery during PLF implementation. The key to developing such a representation is by measuring important behaviours and events in the livestock buildings. The application of image and sound can realise more advanced applications and has enormous potential in the industry. In the end, the importance lies in the accuracy of the developed PLF applications in the commercial farming system as this will also make the farmer embrace the technological development and ensure progress within the PLF field in favour of the livestock animals and their well-being.