Biostimulation in Desert Soils for Microbial-Induced Calcite Precipitation

Ammonium nitrogen and phosphorus removal by bacterial-algal symbiotic dynamic sponge bioremediation system in micropolluted water: Operational mechanism and transformation pathways

Construct a bacteria-algae symbiotic dynamic sponge bioremediation system to simultaneously remove multiple pollutants under micro-pollution conditions. The average removal efficiencies of NH4+-N, PO43--P, total nitrogen (TN), and Ca2+ were 98.35, 78.74, 95.64, and 84.92 %, respectively. Comparative studies with Auxenochlorella sp. sponge and bacterial sponge bioremediation system confirmed that NH4+-N and TN were mainly removed by bacterial heterotrophic nitrification - aerobic denitrification (HN-AD). PO43--P was removed by algal assimilation and the generation of Ca3(PO4)2 and Ca5(PO4)3OH, and Ca2+ was removed by algal electron transfer formation of precipitates and microbially induced calcium precipitation (MICP) by bacteria. Algae provided an aerobic environment for the bacterial HN-AD process through photosynthesis, while respiration produced CO2 and adsorbed Ca2+ to promote the formation of calcium precipitates. Immobilization of Ca2+ with microalgae via bacterial MICP helped to lift microalgal photoinhibition. The bioremediation system provides theoretical support for research on micropolluted water treatment while increasing phosphorus recovery pathways.

Application of microbially induced calcium carbonate precipitation (MICP) process in concrete self-healing and environmental restoration to facilitate carbon neutrality: a critical review

Soil contamination, land desertification and concrete cracking can have significant adverse impacts on sustainable human economic and societal development. Cost-effective and environmentally friendly approaches are recommended to resolve these issues. Microbially induced carbonate precipitation (MICP) is an innovative, attractive and cost-effective in situ biotechnology with high potential for remediation of polluted or desertified soils/lands and cracked concrete and has attracted widespread attention in recent years. Accordingly, the principles of MICP technology and its applications in the remediation of heavy metal-contaminated and desertified soils and self-healing of concrete were reviewed in this study. The production of carbonate mineral precipitates during the MICP process can effectively reduce the mobility of heavy metals in soils, improve the cohesion of dispersed sands and realize self-healing of cracks in concrete. Moreover, CO2 can be fixed during MICP, which can facilitate carbon neutrality and contribute to global warming mitigation. Overall, MICP technology exhibits great promise in environmental restoration and construction engineering applications, despite some challenges remaining in its large-scale implementation, such as the substantial impacts of fluctuating environmental factors on microbial activity and MICP efficacy. Several methods, such as the use of natural materials or wastes as nutrient and calcium sources and isolation of bacterial strains with strong resistance to harsh environmental conditions, are employed to improve the remediation performance of MICP. However, more studies on the efficiency enhancement, mechanism exploration and field-scale applications of MICP are needed.

Loofah sponge crosslinked polyethyleneimine loaded with biochar biofilm reactor for ecological remediation of oligotrophic water: Mechanism, performance, and functional characterization

The removal of complex pollutants from oligotrophic water is an important challenge for researchers. In this study, the HCl-modified loofah sponge crosslinked polyethyleneimine loaded with biochar (LS/PEI@biochar) biofilm reactor was adapted to achieve efficient removal of complex pollutants in oligotrophic water. On the 35 d, the average removal efficiency of chemical oxygen demand (COD), ammonia nitrogen (NH4+-N), calcium (Ca2+), and phosphate (PO43--P) in water was 51, 95, 81, and 77 %, respectively. Additionally, it effectively used a low molecular weight carbon source. Scanning electron microscopy (SEM) results showed that the LS/PEI@biochar biocarrier had superior biofilm suspension performance. Meanwhile, analysis of the biocrystals confirmed Ca2+ and PO43- removal through the generation of CaCO3 (calcite and vaterite) and Ca5(PO4)3OH. This study demonstrated that the system has great efficiency and application prospect in treating oligotrophic water on the laboratory scale, and will be further validated for practical application on large-scale oligotrophic water.

The interplay between microbial communities and soil properties

In recent years, there has been considerable progress in determining the soil properties that influence the structure of the soil microbiome. By contrast, the effects of microorganisms on their soil habitat have received less attention with most previous studies focusing on microbial contributions to soil carbon and nitrogen dynamics. However, soil microorganisms are not only involved in nutrient cycling and organic matter transformations but also alter the soil habitat through various biochemical and biophysical mechanisms. Such microbially mediated modifications of soil properties can have local impacts on microbiome assembly with pronounced ecological ramifications. In this Review, we describe the processes by which microorganisms modify the soil environment, considering soil physics, hydrology and chemistry. We explore how microorganism-soil interactions can generate feedback loops and discuss how microbially mediated modifications of soil properties can serve as an alternative avenue for the management and manipulation of microbiomes to combat soil threats and global change.

Enhanced Strontium Removal through Microbially Induced Carbonate Precipitation by Indigenous Ureolytic Bacteria

Microbial ureolysis offers the potential to remove metals including Sr2+ as carbonate minerals via the generation of alkalinity coupled to NH4+ and HCO3- production. Here, we investigated the potential for bacteria, indigenous to sediments representative of the U.K. Sellafield nuclear site where 90Sr is present as a groundwater contaminant, to utilize urea in order to target Sr2+-associated (Ca)CO3 formation in sediment microcosm studies. Strontium removal was enhanced in most sediments in the presence of urea only, coinciding with a significant pH increase. Adding the biostimulation agents acetate/lactate, Fe(III), and yeast extract to further enhance microbial metabolism, including ureolysis, enhanced ureolysis and increased Sr and Ca removal. Environmental scanning electron microscopy analyses suggested that coprecipitation of Ca and Sr occurred, with evidence of Sr associated with calcium carbonate polymorphs. Sr K-edge X-ray absorption spectroscopy analysis was conducted on authentic Sellafield sediments stimulated with Fe(III) and quarry outcrop sediments amended with yeast extract. Spectra from the treated Sellafield and quarry sediments showed Sr2+ local coordination environments indicative of incorporation into calcite and vaterite crystal structures, respectively. 16S rRNA gene analysis identified ureolytic bacteria of the genus Sporosarcina in these incubations, suggesting they have a key role in enhancing strontium removal. The onset of ureolysis also appeared to enhance the microbial reduction of Fe(III), potentially via a tight coupling between Fe(III) and NH4+ as an electron donor for metal reduction. This suggests ureolysis may support the immobilization of 90Sr via coprecipitation with insoluble calcium carbonate and cofacilitate reductive precipitation of certain redox active radionuclides, e.g., uranium.

State-of-the-art review of soil erosion control by MICP and EICP techniques: Problems, applications, and prospects

In recent years, the application of microbially induced calcite precipitation (MICP) and enzyme-induced carbonate precipitation (EICP) techniques have been extensively studied to mitigate soil erosion, yielding substantial achievements in this regard. This paper presents a comprehensive review of the recent progress in erosion control by MICP and EICP techniques. To further discuss the effectiveness of erosion mitigation in-depth, the estimation methods and characterization of erosion resistance were initially compiled. Moreover, factors affecting the erosion resistance of MICP/EICP-treated soil were expounded, spanning from soil properties to treatment protocols and environmental conditions. The development of optimization and upscaling in erosion mitigation via MICP/EICP was also included in this review. In addition, this review discussed the limitations and correspondingly proposed prospective applications of erosion control via the MICP/EICP approach. The current review presents up-to-date information on the research activities for improving erosion resistance by MICP/EICP, aiming at providing insights for interdisciplinary researchers and guidance for promoting this method to further applications in erosion mitigation.

Microbially Induced Calcium Carbonate Precipitation by Sporosarcina pasteurii: a Case Study in Optimizing Biological CaCO3 Precipitation

Current production of traditional concrete requires enormous energy investment that accounts for approximately 5 to 8% of the world's annual CO2 production. Biocement is a building material that is already in industrial use and has the potential to rival traditional concrete as a more convenient and more environmentally friendly alternative. Biocement relies on biological structures (enzymes, cells, and/or cellular superstructures) to mineralize and bind particles in aggregate materials (e.g., sand and soil particles). Sporosarcina pasteurii is a workhorse organism for biocementation, but most research to date has focused on S. pasteurii as a building material rather than a biological system. In this review, we synthesize available materials science, microbiology, biochemistry, and cell biology evidence regarding biological CaCO3 precipitation and the role of microbes in microbially induced calcium carbonate precipitation (MICP) with a focus on S. pasteurii. Based on the available information, we provide a model that describes the molecular and cellular processes involved in converting feedstock material (urea and Ca2+) into cement. The model provides a foundational framework that we use to highlight particular targets for researchers as they proceed into optimizing the biology of MICP for biocement production.

Microencapsulated reactor for simultaneous removal of calcium, fluoride and phenol using microbially induced calcium precipitation: Mechanism and functional characterization

Fluoride ions (F^-) and phenol in groundwater have become a great hurdle to the pursuit of a healthy drinking water source. This study established a microencapsulated immobilization reactor with Aquabacterium sp. CZ3 for the simultaneous removal of nitrate (NO₃^--N), calcium (Ca²⁺), F^-, and phenol from groundwater with 100%, 67.84%, 88.67%, and 100% removal efficiencies, respectively. The three-dimensional mesh structure of microcapsules facilitated the transport and metabolism of substances, while their synergistic effect with bacteria promoted the removal of contaminants. F^- was removed by co-precipitation to generate Ca₅(PO₄)₃F and CaF₂ and adsorption. On one hand, the phenol toxicity promoted the production of extracellular polymers and improved the tolerance of bacteria; on the other hand, the degradation of phenol provided a carbon source for bacteria and promoted the denitrification. The development of microencapsulated immobilized reactor provided a clear mechanism for phenol and F^- removal under the microbially induced calcium precipitation (MICP) technique, while providing a valuable solution for the treatment of complex groundwater resources.

Experimental Study on the Mechanical Behaviors of Aeolian Sand Treated by Microbially Induced Calcite Precipitation (MICP) and Basalt Fiber Reinforcement (BFR)

Aeolian sand flow is a major cause of land desertification, and it is prone to developing into a dust storm coupled with strong wind and thermal instability. The microbially induced calcite precipitation (MICP) technique can significantly improve the strength and integrity of sandy soils, whereas it easily leads to brittle destruction. To effectively inhibit land desertification, a method coupled with MICP and basalt fiberreinforcement (BFR) was put forward to enhance the strength and toughness of aeolian sand. Based on a permeability test and an unconfined compressive strength (UCS) test, the effects of initial dry density (ρ_d), fiber length (FL), and fiber content (FC) on the characteristics of permeability, strength, and CaCO₃ production were analyzed, and the consolidation mechanism of the MICP-BFR method was explored. The experiments indicated that the permeability coefficient of aeolian sand increased first, then decreased, and subsequently increased with the increase in FC, whereas it exhibited a tendency to decrease first and then increase with the increase in FL. The UCS increased with the increase in the initial dry density, while it increased first and then decreased with the increase in FL and FC. Furthermore, the UCS increased linearly with the increase in CaCO₃ generation, and the maximum correlation coefficient reached 0.852. The CaCO₃ crystals played the roles of providing bonding, filling, and anchoring effects, and the spatial mesh structure formed by the fibers acted as a bridge effect to enhance the strength and brittle damage of aeolian sand. The findings could supply a guideline for sand solidification in desert areas.

Reinforcement of Calcareous Sands by Stimulation of Native Microorganisms Induced Mineralization

Calcareous sand is a special soil formed by the accumulation of carbonate fragments. Its compressibility is caused by a high void ratio and breakable particles. Because of its high carbonate content and weak cementation, its load-bearing capacity is limited. In this study, the optimal stimulation solution was obtained with response surface methodology. Then, the effect of reinforcing calcareous sand was analysed with unconfined compressive strength (UCS) tests, calcium carbonate content tests, microscopy and microbial community analyses. The components and concentrations of the optimal stimulation solution were as follows: sodium acetate (38.00 mM), ammonium chloride (124.24 mM), yeast extract (0.46 g/L), urea (333 mM), and nickel chloride (0.01 mM), and the pH was 8.75. After the calcareous sand was treated with the optimal stimulation scheme, the urease activity was 6.1891 mM urea/min, the calcium carbonate production was 8.40%, and the UCS was 770 kPa, which constituted increases of 71.41%, 35.40%, and 83.33%, respectively, compared with the initial scheme. Scanning electron microscopy (SEM) and X-ray diffraction (XRD) analyses showed that calcium carbonate crystals were formed between the particles of the calcareous sand after the reaction, and the calcium carbonate crystals were mainly calcite. Urease-producing microorganisms became the dominant species in calcareous sand after treatment. This study showed that biostimulation-induced mineralization is feasible for reinforcing calcareous sand.

Reinforcement of reclaimed sand by stimulating native microorganisms for biomineralization

The method of biological stimulation to reinforce soil has good environmental benefits. The optimization of stimulation solutions can not only improve soil reinforcement but also effectively reduce treatment costs. Response surface methodology was used to optimize a biostimulation solution to reinforce reclaimed sand by native microorganism-induced mineralization. First, response surface methodology was used to obtain the optimal stimulation solution. Then, the effect of the optimal stimulation solution in inducing mineralization to reinforce reclaimed sand was evaluated. Finally, the reinforcement mechanism was revealed by SEM, XRD, and microbial diversity analysis. The results showed that the urease activity of the sample optimized by response surface methodology was 1.17 times higher than that of the sample treated with the initial stimulation solution. The uniaxial compressive strength of samples treated with the optimal biostimulation solution and 1.0 M cementation solution over 15 cycles reached 3.94 MPa. The product of microbial mineralization was calcite, which was the main substance responsible for the improvement in the mechanical properties of the reclaimed sand. The concentration of the cementation solution not only affected the production of calcium carbonate but also affected the morphology of calcium carbonate crystals. After sample treatment with the stimulation solution, ureolytic microorganisms became the dominant bacteria in the sample. A comprehensive assessment of the reinforcement effect and cost revealed that using the optimal stimulation solution and 1.0 M cementation solution over 10 cycles was ideal for reinforcing reclaimed sand. Biostimulation is an effective method to reinforce reclaimed sand; however, the actual application effect requires further examination.

Fungal-induced CaCO3 and SrCO3 precipitation: a potential strategy for bioprotection of concrete

Biomineralization of CaCO₃ by microorganisms is a well-documented process considered applicable to concrete self-healing and metal bioremediation. Urea hydrolysis is the most widely explored and efficient pathway regarding concrete bioprotection. However, the potential of fungi has received relatively little attention compared to bacteria. In this work, we show that Fusarium cerealis, Phoma herbarum and Mucor hiemalis, isolated from concrete, could produce 828.6-941.3 mg L^-1 ammonium‑nitrogen in liquid media through urea hydrolysis indicating significant urease activity, and could grow in moderate (pH 8.3) or even extremely alkaline (pH 10.6) conditions. After culture in media containing 50 mM CaCl₂, at least 48.8% Ca²⁺ was removed from solution by the selected fungi as calcite. The accumulation of Ca by the biomass was around 83.64-114.21 mg g^-1. In addition, all fungi could mediate strontium carbonate formation with F. cerealis processing the highest ability for Sr removal, with ~61% added Sr being removed from solution. Scanning electron microscopy showed carbonate biominerals were encrusted on hyphae or aggregated in fungal pellets. When equivalent concentrations of Ca²⁺ and Sr²⁺ were supplemented to the media, CaCO₃ with incorporated Sr formed with F. cerealis and M. hiemalis, and Sr(Sr, Ca)(CO₃)₂ with P. herbarum. Our results demonstrate the potential of fungi in providing carbonate coatings for concrete surfaces and simultaneous immobilization of Sr. We anticipate our work will promote further practical field research on porous cementitious materials protection by fungi and immobilization of potentially toxic metals from metal-laden ingredients, such as fly ash and granulated ground blast furnace slag.

Influence of native ureolytic microbial community on biocementation potential of Sporosarcina pasteurii

Microbially induced calcium carbonate precipitation (MICP)/Biocementation has emerged as a promising technique for soil engineering applications. There are chiefly two methods by which MICP is applied for field applications including biostimulation and bioaugmentation. Although bioaugmentation strategy using efficient ureolytic biocementing culture of Sporosarcina pasteurii is widely practiced, the impact of native ureolytic microbial communities (NUMC) on CaCO₃ mineralisation via S. pasteurii has not been explored. In this paper, we investigated the effect of different concentrations of NUMC on MICP kinetics and biomineral properties in the presence and absence of S. pasteurii. Kinetic analysis showed that the biocementation potential of S. pasteurii is sixfold higher than NUMC and is not significantly impacted even when the concentration of the NUMC is eight times higher. Micrographic results revealed a quick rate of CaCO₃ precipitation by S. pasteurii leading to generation of smaller CaCO₃ crystals (5-40 µm), while slow rate of CaCO₃ precipitation by NUMC led to creation of larger CaCO₃ crystals (35-100 µm). Mineralogical results showed the predominance of calcite phase in both sets. The outcome of current study is crucial for tailor-made applications of MICP.

Microbially Induced Desaturation and Carbonate Precipitation through Denitrification: A Review

Microbially induced carbonate precipitation (MICP) has been proposed as a sustainable approach to solve various environmental, structural, geotechnical and architectural issues. In the last decade, a ubiquitous microbial metabolism, nitrate reduction (also known as denitrification) got attention in MICP research due to its unique added benefits such as simultaneous corrosion inhibition in concrete and desaturation of porous media. The latter even upgraded MICP into a more advanced concept called microbially induced desaturation and precipitation (MIDP) which is being investigated for liquefaction mitigation. In this paper, we present the findings on MICP through denitrification by covering applications under two main titles: (i) applications solely based on MICP, such as soil reinforcement, development of microbial self-healing concrete, restoration of artwork and historical monuments, and industrial wastewater treatment, (ii) an application based on MIDP: liquefaction mitigation. After explaining the denitrification process in detail and describing the MICP and MIDP reaction system occurring through denitrification metabolism, the most recent advances in each potential field of application are collected, addressing the novel findings and limitations, to provide insights toward the practical applications in situ. Finally, the research needs required to deal with the defined challenges in application-oriented upscaling and optimization of MICP through denitrification are suggested. Overall, collected research findings revealed that MICP through denitrification possesses a great potential to replace conventionally used petrochemical-based, labour intensive, destructive and economically unfeasible techniques used in construction industry with a bio-based, labourless, low-carbon technology. This worldwide applicable bio-based technology will facilitate the sustainable development and contribute to the carbon-emission-reduction.

State-of-the-Art Review of the Applicability and Challenges of Microbial-Induced Calcite Precipitation (MICP) and Enzyme-Induced Calcite Precipitation (EICP) Techniques for Geotechnical and Geoenvironmental Applications

The development of alternatives to soil stabilization through mechanical and chemical stabilization has paved the way for the development of biostabilization methods. Since its development, researchers have used different bacteria species for soil treatment. Soil treatment through bioremediation techniques has been used to understand its effect on strength parameters and contaminant remediation. Using a living organism for binding the soil grains to make the soil mass dense and durable is the basic idea of soil biotreatment. Bacteria and enzymes are commonly utilized in biostabilization, which is a common method to encourage ureolysis, leading to calcite precipitation in the soil mass. Microbial-induced calcite precipitation (MICP) and enzyme-induced calcite precipitation (EICP) techniques are emerging trends in soil stabilization. Unlike conventional methods, these techniques are environmentally friendly and sustainable. This review determines the challenges, applicability, advantages, and disadvantages of MICP and EICP in soil treatment and their role in the improvement of the geotechnical and geoenvironmental properties of soil. It further elaborates on their probable mechanism in improving the soil properties in the natural and lab environments. Moreover, it looks into the effectiveness of biostabilization as a remediation of soil contamination. This review intends to present a hands-on adoptable treatment method for in situ implementation depending on specific site conditions.

Soil Erosion: Dust Control and Sand Stabilization

This Special Issue on soil erosion invites novel and original articles based on physical and chemical theories, field and laboratory experimental, soil analyses, and/or statistical and mathematical modeling that advance our knowledge on dust control and sand stabilization.