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Kratter M, Beccaccioli M, Vassallo Y, Benedetti F, La Penna G, Proietti A, Zanellato G, Faino L, Cirigliano A, Neisje de Kruif F, Tomassetti MC, Rossi M, Reverberi M, Quagliariello A, Rinaldi T. Long-term monitoring of the hypogeal Etruscan Tomba degli Scudi, Tarquinia, Italy. Early detection of black spots, investigation of fungal community, and evaluation of their biodeterioration potential. J Appl Microbiol 2024; 135:lxae258. [PMID: 39384568 DOI: 10.1093/jambio/lxae258] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Revised: 09/17/2024] [Accepted: 10/08/2024] [Indexed: 10/11/2024]
Abstract
AIMS Hypogeal environments with cultural heritage interest pose a real challenge for their preservation and conservation. The ancient Etruscan Necropolis of Tarquinia, Italy, consists of 200 tombs decorated with extraordinary mural paintings, of great artistic and historical value. Since the beginning of the restoration campaign in 2016, a regular microbiological survey has been performed in the Tomba degli Scudi. The aim of this study was to investigate the nature of an expansion of black spots on the pictorial layers recently observed. METHODS AND RESULTS To determine the origin of the black spots in the atrium chamber of the Tomba degli Scudi, the fungal community was sampled using various techniques: cellulose discs, swabs, and nylon membranes and investigated by a multi-analytical approach. The obtained results suggest that the identified fungal strains (e.g. Gliomastix murorum and Pseudogymnoascus pannorum) are common to many subterranean environments around the world, such as Lascaux cave. CONCLUSIONS The continuous and long-term monitoring made it possible to detect alterations at an early stage and assess the harmfulness of different fungal strains. This work is a demonstration of the effectiveness of prevention and monitoring actions within these fragile and valuable environments.
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Affiliation(s)
- Matilde Kratter
- Department of Biology and Biotechnologies, Sapienza University of Rome, Rome 00185, Italy
| | - Marzia Beccaccioli
- Department of Environmental Biology, Sapienza University of Rome, Rome 00185, Italy
| | - Ylenia Vassallo
- Department of Environmental Biology, Sapienza University of Rome, Rome 00185, Italy
| | - Francesca Benedetti
- Department of Biology and Biotechnologies, Sapienza University of Rome, Rome 00185, Italy
| | - Giancarlo La Penna
- Department of Basic and Applied Sciences for Engineering, Sapienza University of Rome, Rome 00185, Italy
| | - Anacleto Proietti
- Department of Basic and Applied Sciences for Engineering, Sapienza University of Rome, Rome 00185, Italy
| | - Gianluca Zanellato
- Department of Basic and Applied Sciences for Engineering, Sapienza University of Rome, Rome 00185, Italy
- CNIS-Center for Nanotechnology Applied to Industry of La Sapienza, Sapienza University of Rome, Rome 00185, Italy
| | - Luigi Faino
- Department of Environmental Biology, Sapienza University of Rome, Rome 00185, Italy
| | - Angela Cirigliano
- Department of Biology and Biotechnologies, Sapienza University of Rome, Rome 00185, Italy
| | | | | | - Marco Rossi
- Department of Basic and Applied Sciences for Engineering, Sapienza University of Rome, Rome 00185, Italy
- CNIS-Center for Nanotechnology Applied to Industry of La Sapienza, Sapienza University of Rome, Rome 00185, Italy
| | - Massimo Reverberi
- Department of Environmental Biology, Sapienza University of Rome, Rome 00185, Italy
| | - Andrea Quagliariello
- Department of Comparative Biomedicine and Food Science, University of Padova, Padova 35123, Italy
| | - Teresa Rinaldi
- Department of Biology and Biotechnologies, Sapienza University of Rome, Rome 00185, Italy
- CNIS-Center for Nanotechnology Applied to Industry of La Sapienza, Sapienza University of Rome, Rome 00185, Italy
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2
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Zhang Y, Wu F, Gu JD, He K, Fang Z, Liu X, He D, Ding X, Li J, Han Z, Zhang Q, Feng H. Dominance by cyanobacteria in the newly formed biofilms on stone monuments under a protective shade at the Beishiku Temple in China. ENVIRONMENTAL RESEARCH 2024; 251:118576. [PMID: 38432571 DOI: 10.1016/j.envres.2024.118576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 02/17/2024] [Accepted: 02/26/2024] [Indexed: 03/05/2024]
Abstract
Following the installation of a protective shade, rapid propagation of microorganisms showing in black and grey colors occurred at Beishiku Temple in Gansu Province of China. This study employed a combination of high-throughput sequencing technology, morphological examinations, and an assessment of the surrounding environmental condition to analyze newly formed microbial disease spots. The investigation unveiled the responsible microorganisms and the instigating factors of the microbial outbreak that subsequently to the erection of the shade. Through comparison of bioinformatics, the ASV method surpasses the OTU method in characterizing community compositional changes by the dominant microbial groups, the phylum Cyanobacteria emerged as the most dominant ones in the microbial community accountable for the post-shade microbial deterioration. The black spot and grey spot are predominantly composed of Mastigocladopsis and Scytonema, respectively. Validation analysis, based on the active RNA-level community results, supported and validated these conclusions. Comparative scrutiny of the microbial community before shade installation and the background environmental data disclosed that the erection of the shade prompted a decrease in temperatures and an increase in humidity within the protected area. Consequently, this spurred the exponential proliferation of indigenous cyanobacteria in the spots observed. The outcomes of this study carry considerable significance in devising preventive conservation strategies for cultural heritage and in managing the process of biodeterioration.
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Affiliation(s)
- Yong Zhang
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, 730000, P.R. China
| | - Fasi Wu
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang, Gansu, 736200, P.R. China; Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang, Gansu, 736200, P.R. China.
| | - Ji-Dong Gu
- Environmental Science and Engineering Group, Guangdong Technion - Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong, 515063, P.R. China; Guangdong Provincial Key Laboratory of Materials and Technologies for Energy Conversion, Guangdong Technion - Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong, 515063, P.R. China
| | - Kun He
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, 730000, P.R. China
| | - Zhou Fang
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, 730000, P.R. China
| | - Xiaobo Liu
- School of Environmental and Biological Engineering, Nanjing University of Science and Technology, 200 Xiaolingwei Street, Nanjing, 210094, Jiangsu, P.R. China
| | - Dongpeng He
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang, Gansu, 736200, P.R. China; Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang, Gansu, 736200, P.R. China
| | - Xinghua Ding
- School of History and Culture, Hunan Normal University, 36 Lushan Road, Changsha, 410000, Hunan, P.R. China
| | - Jie Li
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang, Gansu, 736200, P.R. China; Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang, Gansu, 736200, P.R. China
| | - Zengyang Han
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang, Gansu, 736200, P.R. China; Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang, Gansu, 736200, P.R. China
| | - Qi Zhang
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, 730000, P.R. China
| | - Huyuan Feng
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, 730000, P.R. China.
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3
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Chander AM, de Melo Teixeira M, Singh NK, Williams MP, Parker CW, Leo P, Stajich JE, Torok T, Tighe S, Mason CE, Venkateswaran K. Genomic and morphological characterization of Knufia obscura isolated from the Mars 2020 spacecraft assembly facility. Sci Rep 2024; 14:12249. [PMID: 38806503 PMCID: PMC11133487 DOI: 10.1038/s41598-024-61115-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Accepted: 05/02/2024] [Indexed: 05/30/2024] Open
Abstract
Members of the family Trichomeriaceae, belonging to the Chaetothyriales order and the Ascomycota phylum, are known for their capability to inhabit hostile environments characterized by extreme temperatures, oligotrophic conditions, drought, or presence of toxic compounds. The genus Knufia encompasses many polyextremophilic species. In this report, the genomic and morphological features of the strain FJI-L2-BK-P2 presented, which was isolated from the Mars 2020 mission spacecraft assembly facility located at the Jet Propulsion Laboratory in Pasadena, California. The identification is based on sequence alignment for marker genes, multi-locus sequence analysis, and whole genome sequence phylogeny. The morphological features were studied using a diverse range of microscopic techniques (bright field, phase contrast, differential interference contrast and scanning electron microscopy). The phylogenetic marker genes of the strain FJI-L2-BK-P2 exhibited highest similarities with type strain of Knufia obscura (CBS 148926T) that was isolated from the gas tank of a car in Italy. To validate the species identity, whole genomes of both strains (FJI-L2-BK-P2 and CBS 148926T) were sequenced, annotated, and strain FJI-L2-BK-P2 was confirmed as K. obscura. The morphological analysis and description of the genomic characteristics of K. obscura FJI-L2-BK-P2 may contribute to refining the taxonomy of Knufia species. Key morphological features are reported in this K. obscura strain, resembling microsclerotia and chlamydospore-like propagules. These features known to be characteristic features in black fungi which could potentially facilitate their adaptation to harsh environments.
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Affiliation(s)
- Atul Munish Chander
- Biotechnology and Planetary Protection Group, Jet Propulsion Laboratory, California Institute of Technology, M/S 89-2, 4800 Oak Grove Dr., Pasadena, CA, 91109, USA
| | - Marcus de Melo Teixeira
- Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA
- School of Medicine, University of Brasilia, Brasília, DF, Brazil
| | - Nitin K Singh
- Biotechnology and Planetary Protection Group, Jet Propulsion Laboratory, California Institute of Technology, M/S 89-2, 4800 Oak Grove Dr., Pasadena, CA, 91109, USA
| | - Michael P Williams
- Biotechnology and Planetary Protection Group, Jet Propulsion Laboratory, California Institute of Technology, M/S 89-2, 4800 Oak Grove Dr., Pasadena, CA, 91109, USA
| | - Ceth W Parker
- Biotechnology and Planetary Protection Group, Jet Propulsion Laboratory, California Institute of Technology, M/S 89-2, 4800 Oak Grove Dr., Pasadena, CA, 91109, USA
| | - Patrick Leo
- Biotechnology and Planetary Protection Group, Jet Propulsion Laboratory, California Institute of Technology, M/S 89-2, 4800 Oak Grove Dr., Pasadena, CA, 91109, USA
| | - Jason E Stajich
- Department of Microbiology and Plant Pathology, University of CA-Riverside, Riverside, CA, USA
| | - Tamas Torok
- Ecology Department, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Scott Tighe
- Vermont Integrative Genomics Lab, University of Vermont, Burlington, VT, USA
| | - Christopher E Mason
- WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, 1305 York Avenue, Room Y-13.15, New York, NY, 10021, USA.
| | - Kasthuri Venkateswaran
- Biotechnology and Planetary Protection Group, Jet Propulsion Laboratory, California Institute of Technology, M/S 89-2, 4800 Oak Grove Dr., Pasadena, CA, 91109, USA.
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4
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Isola D, Lee HJ, Chung YJ, Zucconi L, Pelosi C. Once upon a Time, There Was a Piece of Wood: Present Knowledge and Future Perspectives in Fungal Deterioration of Wooden Cultural Heritage in Terrestrial Ecosystems and Diagnostic Tools. J Fungi (Basel) 2024; 10:366. [PMID: 38786721 PMCID: PMC11122135 DOI: 10.3390/jof10050366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 04/22/2024] [Accepted: 05/15/2024] [Indexed: 05/25/2024] Open
Abstract
Wooden Cultural Heritage (WCH) represents a significant portion of the world's historical and artistic heritage, consisting of immovable and movable artefacts. Despite the expertise developed since ancient times to enhance its durability, wooden artefacts are inevitably prone to degradation. Fungi play a pivotal role in the deterioration of WCH in terrestrial ecosystems, accelerating its decay and leading to alterations in color and strength. Reviewing the literature of the last 25 years, we aimed to provide a comprehensive overview of fungal diversity affecting WCH, the biochemical processes involved in wood decay, and the diagnostic tools available for fungal identification and damage evaluation. Climatic conditions influence the occurrence of fungal species in threatened WCH, characterized by a prevalence of wood-rot fungi (e.g., Serpula lacrymans, Coniophora puteana) in architectural heritage in temperate and continental climates and Ascomycota in indoor and harsh environments. More efforts are needed to address the knowledge fragmentation concerning biodiversity, the biology of the fungi involved, and succession in the degradative process, which is frequently centered solely on the main actors. Multidisciplinary collaboration among engineers, restorers, and life sciences scientists is vital for tackling the challenges posed by climate change with increased awareness. Traditional microbiology and culture collections are fundamental in laying solid foundations for a more comprehensive interpretation of big data.
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Affiliation(s)
- Daniela Isola
- Department of Economics, Engineering, Society and Business Organization (DEIM), University of Tuscia, Largo dell’Università Snc, 01100 Viterbo, Italy;
| | - Hyun-Ju Lee
- Institute of Preventive Conservation for Cultural Heritage, Korea National University of Cultural Heritage, Buyeo 33115, Republic of Korea;
| | - Yong-Jae Chung
- Department of Heritage Conservation and Restoration, Graduate School of Cultural Heritage, Korea National University of Cultural Heritage, Buyeo 33115, Republic of Korea;
| | - Laura Zucconi
- Department of Ecological and Biological Sciences (DEB), University of Tuscia, Largo dell’Università Snc, 01100 Viterbo, Italy;
| | - Claudia Pelosi
- Department of Economics, Engineering, Society and Business Organization (DEIM), University of Tuscia, Largo dell’Università Snc, 01100 Viterbo, Italy;
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5
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Dán K, Kocsubé S, Tóth L, Farkas A, Rákhely G, Galgóczy L. Isolation and identification of fungal biodeteriogens from the wall of a cultural heritage church and potential applicability of antifungal proteins in protection. JOURNAL OF CULTURAL HERITAGE 2024; 67:194-202. [DOI: 10.1016/j.culher.2024.03.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2025]
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6
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Gadd GM, Fomina M, Pinzari F. Fungal biodeterioration and preservation of cultural heritage, artwork, and historical artifacts: extremophily and adaptation. Microbiol Mol Biol Rev 2024; 88:e0020022. [PMID: 38179930 PMCID: PMC10966957 DOI: 10.1128/mmbr.00200-22] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 09/11/2023] [Indexed: 01/06/2024] Open
Abstract
SUMMARYFungi are ubiquitous and important biosphere inhabitants, and their abilities to decompose, degrade, and otherwise transform a massive range of organic and inorganic substances, including plant organic matter, rocks, and minerals, underpin their major significance as biodeteriogens in the built environment and of cultural heritage. Fungi are often the most obvious agents of cultural heritage biodeterioration with effects ranging from discoloration, staining, and biofouling to destruction of building components, historical artifacts, and artwork. Sporulation, morphological adaptations, and the explorative penetrative lifestyle of filamentous fungi enable efficient dispersal and colonization of solid substrates, while many species are able to withstand environmental stress factors such as desiccation, ultra-violet radiation, salinity, and potentially toxic organic and inorganic substances. Many can grow under nutrient-limited conditions, and many produce resistant cell forms that can survive through long periods of adverse conditions. The fungal lifestyle and chemoorganotrophic metabolism therefore enable adaptation and success in the frequently encountered extremophilic conditions that are associated with indoor and outdoor cultural heritage. Apart from free-living fungi, lichens are a fungal growth form and ubiquitous pioneer colonizers and biodeteriogens of outdoor materials, especially stone- and mineral-based building components. This article surveys the roles and significance of fungi in the biodeterioration of cultural heritage, with reference to the mechanisms involved and in relation to the range of substances encountered, as well as the methods by which fungal biodeterioration can be assessed and combated, and how certain fungal processes may be utilized in bioprotection.
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Affiliation(s)
- Geoffrey Michael Gadd
- Geomicrobiology Group, School of Life Sciences, University of Dundee, Dundee, United Kingdom
- State Key Laboratory of Heavy Oil Processing, Beijing Key Laboratory of Oil and Gas Pollution Control, College of Chemical Engineering and Environment, China University of Petroleum, Beijing, China
| | - Marina Fomina
- Zabolotny Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, Kyiv, Ukraine
- National Reserve “Sophia of Kyiv”, Kyiv, Ukraine
| | - Flavia Pinzari
- Institute for Biological Systems (ISB), Council of National Research of Italy (CNR), Monterotondo (RM), Italy
- Natural History Museum, London, United Kingdom
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7
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Toreno G, Zucconi L, Caneva G, Meloni P, Isola D. Recolonization dynamics of marble monuments after cleaning treatments: A nine-year follow-up study. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:169350. [PMID: 38103606 DOI: 10.1016/j.scitotenv.2023.169350] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 11/07/2023] [Accepted: 12/11/2023] [Indexed: 12/19/2023]
Abstract
The prevention and control of biological patinas on outdoor stone monuments represent a demanding challenge for the conservation of cultural heritage also due to some microorganisms, particularly resistant to treatments, such as black meristematic fungi, an eco-physiological group well known for its tolerance to extreme conditions. Even if several methods and eco-friendly products have been proposed as new alternatives, traditional biocides are still far from being completely replaced. Recolonization is a natural process that occurs sooner or later after cleaning. The time that elapses until its occurrence can vary considerably depending on environmental conditions and the used products; unfortunately, the papers describing the effect of treatments over time are rare. This work aims to shed light on the recolonization process of marble surfaces in the ancient monumental cemetery of Bonaria (Cagliari) after nine years from treatments, evaluating the long-term efficiency of two different cleaning methods, namely dimethyl sulfoxide-based gel (DMSO-based gel) and Biotin T (a didecyldimethylammonium chloride-based product-). In this context, the microflora present before treatments and in the following years was assessed by culture-based methods and identified by molecular techniques, with attention on black meristematic fungi, which were used as reference for the most resistant lithobiontic organisms. Different environmental parameters, such as temperature, exposition, dominant winds, and rainfall, were considered, and infrared thermography, portable light microscopy, and image analysis were used. This research evidenced the influence of water availability and lightning in recolonization processes, the transition from the pioneer fungal community versus more resistant black fungal species after Biotin T treatment, and the long-lasting efficiency of the DMSO-based gel. These findings prove that this low-impact method deserves more attention in the conservation of outdoor marble monuments, emphasizing the importance of long-term studies.
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Affiliation(s)
- Georgia Toreno
- Superintendency of Archaeology, Fine Arts and Landscape for the metropolitan city of Cagliari and the Provinces of Oristano and South Sardinia, Italy.
| | - Laura Zucconi
- Department of Ecological and Biological Sciences (DEB), University of Tuscia, 01100 Viterbo, Italy.
| | - Giulia Caneva
- Department of Sciences, Roma Tre University, 00146 Rome, Italy.
| | - Paola Meloni
- Department of Mechanical, Chemical and Materials Engineering (DIMCM), University of Cagliari, 09123 Cagliari, Italy; Laboratorio Colle di Bonaria, University of Cagliari, 09125 Cagliari, Italy.
| | - Daniela Isola
- Department of Sciences, Roma Tre University, 00146 Rome, Italy; Department of Economics, Engineering, Society and Business Organization (DEIM), University of Tuscia, 01100 Viterbo, Italy.
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8
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Sala-Luis A, Oliveira-Urquiri H, Bosch-Roig P, Martín-Rey S. Eco-Sustainable Approaches to Prevent and/or Eradicate Fungal Biodeterioration on Easel Painting. COATINGS 2024; 14:124. [DOI: 10.3390/coatings14010124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]
Abstract
Eliminating and controlling fungal biodeterioration is one of the most important challenges of easel painting conservation. Historically, the pathologies produced by biodeterioration agents had been treated with non-specific products or with biocides specially designed for conservation but risky for human health or the environment due to their toxicity. In recent years, the number of research that studied more respectful solutions for the disinfection of paintings has increased, contributing to society’s efforts to achieve the Sustainable Development Goals (SDGs). Here, an overview of the biodeterioration issues of the easel paintings is presented, critically analyzing chemical and eco-sustainable approaches to prevent or eradicate biodeterioration. Concretely, Essential Oils and light radiations are studied in comparison with the most used chemical biocides in the field, including acids, alcohols, and quaternary ammonium salts. This review describes those strategies’ biocidal mechanisms, efficiency, and reported applications in vitro assays on plates, mockups, and real scale. Benefits and drawbacks are evaluated, including workability, easel painting material alterations, health risks, and environmental sustainability. This review shows innovative and eco-friendly methods from an easel painting conservation perspective, detecting its challenges and opportunities to develop biocontrol strategies to substitute traditional chemical products.
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Affiliation(s)
- Agustí Sala-Luis
- Instituto Universitario de Restauración del Patrimonio, Universitat Politècnica de València, 46022 Valencia, Spain
| | - Haizea Oliveira-Urquiri
- Instituto Universitario de Restauración del Patrimonio, Universitat Politècnica de València, 46022 Valencia, Spain
| | - Pilar Bosch-Roig
- Instituto Universitario de Restauración del Patrimonio, Universitat Politècnica de València, 46022 Valencia, Spain
| | - Susana Martín-Rey
- Instituto Universitario de Restauración del Patrimonio, Universitat Politècnica de València, 46022 Valencia, Spain
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9
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Medina-Armijo C, Isola D, Illa J, Puerta A, Viñas M, Prenafeta-Boldú FX. The Metallotolerance and Biosorption of As(V) and Cr(VI) by Black Fungi. J Fungi (Basel) 2024; 10:47. [PMID: 38248956 PMCID: PMC10817489 DOI: 10.3390/jof10010047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 12/28/2023] [Accepted: 01/03/2024] [Indexed: 01/23/2024] Open
Abstract
A collection of 34 melanized fungi isolated previously from anthropogenic contaminated sites were assessed for their tolerance to toxic concentrations of As(V) and Cr(VI) anions. Three strains of the species Cyphellophora olivacea, Rhinocladiella similis, and Exophiala mesophila (Chaetothyriales) were identified as hyper-metallotolerant, with estimated IC50 values that ranged from 11.2 to 16.9 g L-1 for As(V) and from 2.0 to 3.4 g L-1 for Cr(VI). E. mesophila and R. similis were selected for subsequent assays on their biosorption capacity and kinetics under different pH values (4.0 and 6.5) and types of biomass (active and dead cells and melanin extracts). The fungal biosorption of As(V) was relatively ineffective, but significant removal of Cr(VI) was observed from liquid cultures. The Langmuir model with second-order kinetics showed maximum sorption capacities of 39.81 mg Cr6+ g-1 for R. similis and 95.26 mg Cr6+ g-1 for E. mesophila on a dry matter basis, respectively, while the kinetic constant for these two fungi was 1.32 × 10-6 and 1.39 × 10-7 g (mg Cr6+ min)-1. Similar experiments with melanin extracts of E. mesophila showed maximum sorption capacities of 544.84 mg Cr6+ g-1 and a kinetic constant of 1.67 × 10-6 g (mg Cr6+ min)-1. These results were compared to bibliographic data, suggesting that metallotolerance in black fungi might be the result of an outer cell-wall barrier to reduce the diffusion of toxic metals into the cytoplasm, as well as the inner cell wall biosorption of leaked metals by melanin.
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Affiliation(s)
- Cristy Medina-Armijo
- Program of Sustainability in Biosystems, Institute of Agrifood Research and Technology (IRTA), 08140 Caldes de Montbui, Spain
- Faculty of Pharmacy and Food Sciences, University of Barcelona, 08028 Barcelona, Spain
| | - Daniela Isola
- Department of Economics, Engineering, Society and Business Organization (DEIM), University of Tuscia, 01100 Viterbo, Italy
| | - Josep Illa
- Department of Computing and Industrial Engineering, University of Lleida, 25001 Lleida, Spain
| | - Anna Puerta
- Program of Sustainability in Biosystems, Institute of Agrifood Research and Technology (IRTA), 08140 Caldes de Montbui, Spain
| | - Marc Viñas
- Program of Sustainability in Biosystems, Institute of Agrifood Research and Technology (IRTA), 08140 Caldes de Montbui, Spain
| | - Francesc X. Prenafeta-Boldú
- Program of Sustainability in Biosystems, Institute of Agrifood Research and Technology (IRTA), 08140 Caldes de Montbui, Spain
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10
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Paiva DS, Trovão J, Fernandes L, Mesquita N, Tiago I, Portugal A. Expanding the Microcolonial Black Fungi Aeminiaceae Family: Saxispiralis lemnorum gen. et sp. nov. ( Mycosphaerellales), Isolated from Deteriorated Limestone in the Lemos Pantheon, Portugal. J Fungi (Basel) 2023; 9:916. [PMID: 37755024 PMCID: PMC10533162 DOI: 10.3390/jof9090916] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 09/04/2023] [Accepted: 09/08/2023] [Indexed: 09/28/2023] Open
Abstract
With an impressive ability to survive in harsh environments, black fungi are an ecological group of melanized fungi that are widely recognized as a major contributor to the biodeterioration of stone cultural heritage materials. As part of the ongoing efforts to study the fungal diversity thriving in a deteriorated limestone funerary art piece at the Lemos Pantheon, a national monument located in Águeda, Portugal, two isolates of an unknown microcolonial black fungus were retrieved. These isolates were thoroughly studied through a comprehensive analysis based on a multi-locus phylogeny of a combined dataset of ITS rDNA, LSU, and rpb2, along with morphological, physiological, and ecological characteristics. Based on the data obtained from this integrative analysis, we propose a new genus, Saxispiralis gen. nov., and a new species, Saxispiralis lemnorum sp. nov., in the recently described Aeminiaceae family (order Mycosphaerellales). Prior to this discovery, this family only had one known genus and species, Aeminium ludgeri, also isolated from deteriorated limestone. Additionally, considering the isolation source of the fungus and to better understand its potential contribution to the overall stone monument biodeterioration, its in vitro biodeteriorative potential was also evaluated. This work represents a significant contribution to the understanding of the fungal diversity involved in the biodeterioration of limestone heritage.
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Affiliation(s)
- Diana S. Paiva
- Centre for Functional Ecology (CFE)—Science for People & the Planet, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-456 Coimbra, Portugal
| | - João Trovão
- Centre for Functional Ecology (CFE)—Science for People & the Planet, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-456 Coimbra, Portugal
| | - Luís Fernandes
- Centre for Functional Ecology (CFE)—Science for People & the Planet, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-456 Coimbra, Portugal
| | - Nuno Mesquita
- Centre for Functional Ecology (CFE)—Science for People & the Planet, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-456 Coimbra, Portugal
| | - Igor Tiago
- Centre for Functional Ecology (CFE)—Science for People & the Planet, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-456 Coimbra, Portugal
| | - António Portugal
- Centre for Functional Ecology (CFE)—Science for People & the Planet, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-456 Coimbra, Portugal
- FitoLab—Laboratory for Phytopathology, Instituto Pedro Nunes (IPN), Rua Pedro Nunes, 3030-199 Coimbra, Portugal
- TERRA—Associate Laboratory for Sustainable Land Use and Ecosystem Services, Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-456 Coimbra, Portugal
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11
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Nonthijun P, Mills N, Mills N, Yongsawas R, Sansupa C, Suwannarach N, Jaikang C, Motanated K, Chayapakdee P, Jongjitngam S, Noirungsee N, Disayathanoowat T. Seasonal Variations in Fungal Communities on the Surfaces of Lan Na Sandstone Sculptures and Their Biodeterioration Capacities. J Fungi (Basel) 2023; 9:833. [PMID: 37623604 PMCID: PMC10455195 DOI: 10.3390/jof9080833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Revised: 08/02/2023] [Accepted: 08/06/2023] [Indexed: 08/26/2023] Open
Abstract
Environmental factors and climate are the primary factors influencing the microbial colonization and deterioration of cultural heritage in outdoor environments. Hence, it is imperative to investigate seasonal variations in microbial communities and the biodeterioration they cause. This study investigated the surfaces of sandstone sculptures at Wat Umong Suan Phutthatham, Chiang Mai, Thailand, during wet and dry seasons using culture-dependent and culture-independent approaches. The fungi isolated from the sandstone sculptures were assessed for biodeterioration attributes including drought tolerance, acid production, calcium crystal formation, and calcium precipitation. The results show that most of the fungal isolates exhibited significant potential for biodeterioration activities. Furthermore, a culture-independent approach was employed to investigate the fungal communities and assess their diversity, interrelationship, and predicted function. The fungal diversity and the communities varied seasonally. The functional prediction indicated that pathotroph-saprotroph fungi comprised the main fungal guild in the dry season, and pathotroph-saprotroph-symbiotroph fungi comprised the dominant guild in the wet season. Remarkably, a network analysis revealed numerous positive correlations among fungal taxa within each season, suggesting a potential synergy that promotes the biodeterioration of sandstone. These findings offer valuable insights into seasonal variations in fungal communities and their impacts on the biodeterioration of sandstone sculptures. This information can be utilized for monitoring, management, and maintenance strategies aimed at preserving this valuable cultural heritage.
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Affiliation(s)
- Paradha Nonthijun
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; (P.N.); (N.M.); (N.M.); (R.Y.); (C.S.); (N.S.); (P.C.)
| | - Natasha Mills
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; (P.N.); (N.M.); (N.M.); (R.Y.); (C.S.); (N.S.); (P.C.)
| | - Nantana Mills
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; (P.N.); (N.M.); (N.M.); (R.Y.); (C.S.); (N.S.); (P.C.)
| | - Rujipas Yongsawas
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; (P.N.); (N.M.); (N.M.); (R.Y.); (C.S.); (N.S.); (P.C.)
| | - Chakriya Sansupa
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; (P.N.); (N.M.); (N.M.); (R.Y.); (C.S.); (N.S.); (P.C.)
| | - Nakarin Suwannarach
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; (P.N.); (N.M.); (N.M.); (R.Y.); (C.S.); (N.S.); (P.C.)
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Churdsak Jaikang
- Toxicology Section, Department of Forensic Medicine, Faculty of Medicine, Chiang Mai University, Chiang Mai 50200, Thailand;
| | - Kannipa Motanated
- Department of Geological Sciences, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand;
| | - Pattarasuda Chayapakdee
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; (P.N.); (N.M.); (N.M.); (R.Y.); (C.S.); (N.S.); (P.C.)
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Surachai Jongjitngam
- Department of Thai Art, Faculty of Fine Arts, Chiang Mai University, Chiang Mai 50200, Thailand;
| | - Nuttapol Noirungsee
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; (P.N.); (N.M.); (N.M.); (R.Y.); (C.S.); (N.S.); (P.C.)
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Terd Disayathanoowat
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; (P.N.); (N.M.); (N.M.); (R.Y.); (C.S.); (N.S.); (P.C.)
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand
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12
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Pinna D, Mazzotti V, Gualtieri S, Voyron S, Andreotti A, Favero-Longo SE. Damaging and protective interactions of lichens and biofilms on ceramic dolia and sculptures of the International Museum of Ceramics, Faenza, Italy. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 877:162607. [PMID: 36906030 DOI: 10.1016/j.scitotenv.2023.162607] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 02/24/2023] [Accepted: 02/28/2023] [Indexed: 05/06/2023]
Abstract
Although ceramic objects are an important part of the worldwide cultural heritage, few investigations on the effects of lithobiontic growth on their outdoor conservation are available in the literature. Many aspects of the interaction between lithobionts and stones are still unknown or strongly debated, as in the case of equilibria between biodeterioration and bioprotection. This paper describes research on the colonization by lithobionts on outdoor ceramic Roman dolia and contemporary sculptures of the International Museum of Ceramics, Faenza (Italy). Accordingly, the study i) characterized the mineralogical composition and petrographic structure of the artworks, ii) performed porosimetric measurements, iii) identified lichen and microbial diversity, iv) elucidated the interaction of the lithobionts with the substrates. Moreover, v) the measurements of variability in stone surface hardness and in water absorption of colonized and uncolonized areas were collected to assess damaging and/or protective effects by the lithobionts. The investigation showed how the biological colonization depends on physical properties of the substrates as well on climatic conditions of environments in which the ceramic artworks are located. The results indicated that lichens Protoparmeliopsis muralis and Lecanora campestris may have a bioprotective effect on ceramics with high total porosity and pores with very small diameters, as they poorly penetrate the substrate, do not negatively affect surface hardness and are able to reduce the amount of absorbed water limiting the water ingress. By contrast, Verrucaria nigrescens, here widely found in association with rock-dwelling fungi, deeply penetrate terracotta causing substrate disaggregation, with negative consequences on surface hardness and water absorption. Accordingly, a careful evaluation of the negative and positive effects of lichens must be carried out before deciding their removal. Regarding biofilms, their barrier efficacy is related to their thickness and composition. Even if thin, they can impact negatively on substrates enhancing the water absorption in comparison to uncolonized parts.
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Affiliation(s)
- Daniela Pinna
- Chemistry Department, University of Bologna, Ravenna Campus, via Guaccimanni 42, Ravenna, Italy.
| | - Valentina Mazzotti
- Museo Internazionale delle Ceramiche in Faenza, Viale Baccarini 19, 48018 Faenza, RA, Italy.
| | - Sabrina Gualtieri
- Institute of Science and Technology for Ceramics, National Research Council, Via Granarolo 64, 48018 Faenza, RA, Italy.
| | - Samuele Voyron
- Dipartimento di Scienze della Vita e Biologia dei Sistemi (Life Sciences and Systems Biology), viale Mattioli 25, 10125 Torino, Italy.
| | - Alessia Andreotti
- Department of Chemistry and Industrial Chemistry, University of Pisa, via Moruzzi 13, Pisa, Italy.
| | - Sergio Enrico Favero-Longo
- Dipartimento di Scienze della Vita e Biologia dei Sistemi (Life Sciences and Systems Biology), viale Mattioli 25, 10125 Torino, Italy.
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13
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Berti L, Marvasi M, Perito B. Characterization of the Community of Black Meristematic Fungi Inhabiting the External White Marble of the Florence Cathedral. J Fungi (Basel) 2023; 9:665. [PMID: 37367601 DOI: 10.3390/jof9060665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 06/10/2023] [Accepted: 06/12/2023] [Indexed: 06/28/2023] Open
Abstract
Meristematic black fungi are a highly damaging group of microorganisms responsible for the deterioration of outdoor exposed monuments. Their resilience to various stresses poses significant challenges for removal efforts. This study focuses on the community of meristematic fungi inhabiting the external white marble of the Cathedral of Santa Maria del Fiore, where they contribute to its darkening. Twenty-four strains were isolated from two differently exposed sites of the Cathedral, and their characterization was conducted. Phylogenetic analysis using ITS and LSU rDNA regions revealed a wide diversity of rock-inhabiting fungal strains within the sampled areas. Eight strains, belonging to different genera, were also tested for thermal preferences, salt tolerance, and acid production to investigate their tolerance to environmental stressors and their interaction with stone. All tested strains were able to grow in the range of 5-30 °C, in the presence 5% NaCl, and seven out of eight strains were positive for the production of acid. Their sensitivities to essential oils of thyme and oregano and to the commercial biocide Biotin T were also tested. The essential oils were found to be the most effective against black fungi growth, indicating the possibility of developing a treatment with a low environmental impact.
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Affiliation(s)
- Letizia Berti
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy
- Department of Sciences of Antiquity, "La Sapienza" University of Rome, Piazzale Aldo Moro 5, 00186 Rome, Italy
| | - Massimiliano Marvasi
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy
| | - Brunella Perito
- Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy
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14
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Korsa G, Konwarh R, Masi C, Ayele A, Haile S. Microbial cellulase production and its potential application for textile industries. ANN MICROBIOL 2023; 73:13. [DOI: 10.1186/s13213-023-01715-w] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Accepted: 03/22/2023] [Indexed: 09/03/2023] Open
Abstract
Abstract
Purpose
The textile industry’s previous chemical use resulted in thousands of practical particulate emissions, such as machine component damage and drainage system blockage, both of which have practical implications. Enzyme-based textile processing is cost-effective, environmentally friendly, non-hazardous, and water-saving. The purpose of this review is to give evidence on the potential activity of microbial cellulase in the textile industry, which is mostly confined to the realm of research.
Methods
This review was progressive by considering peer-reviewed papers linked to microbial cellulase production, and its prospective application for textile industries was appraised and produced to develop this assessment. Articles were divided into two categories based on the results of trustworthy educational journals: methods used to produce the diversity of microorganisms through fermentation processes and such approaches used to produce the diversity of microbes through microbial fermentation. Submerged fermentation (SMF) and solid-state fermentation (SSF) techniques are currently being used to meet industrial demand for microbial cellulase production in the bio textile industry.
Results
Microbial cellulase is vital for increasing day to day due to its no side effect on the environment and human health becoming increasingly important. In conventional textile processing, the gray cloth was subjected to a series of chemical treatments that involved breaking the dye molecule’s amino group with Cl − , which started and accelerated dye(-resistant) bond cracking. A cellulase enzyme is primarily derived from a variety of microbial species found in various ecological settings as a biotextile/bio-based product technology for future needs in industrial applications.
Conclusion
Cellulase has been produced for its advantages in cellulose-based textiles, as well as for quality enhancement and fabric maintenance over traditional approaches. Cellulase’s role in the industry was microbial fermentation processes in textile processing which was chosen as an appropriate and environmentally sound solution for a long and healthy lifestyle.
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15
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Sanmartín P, Bosch-Roig P, Pangallo D, Kraková L, Serrano M. Unraveling disparate roles of organisms, from plants to bacteria, and viruses on built cultural heritage. Appl Microbiol Biotechnol 2023; 107:2027-2037. [PMID: 36820899 PMCID: PMC9947938 DOI: 10.1007/s00253-023-12423-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 12/19/2022] [Accepted: 01/31/2023] [Indexed: 02/24/2023]
Abstract
The different organisms, ranging from plants to bacteria, and viruses that dwell on built cultural heritage can be passive or active participants in conservation processes. For the active participants, particular attention is generally given to organisms that play a positive role in bioprotection, bioprecipitation, bioconsolidation, bioremediation, biocleaning, and biological control and to those involved in providing ecosystem services, such as reducing temperature, pollution, and noise in urban areas. The organisms can also evolve or mutate in response to changes, becoming tolerant and resistant to biocidal treatments or acquiring certain capacities, such as water repellency or resistance to ultraviolet radiation. Our understanding of the capacities and roles of these active organisms is constantly evolving as bioprotection/biodeterioration, and biotreatment studies are conducted and new techniques for characterizing species are developed. This brief review article aims to shed light on interesting research that has been abandoned as well as on recent (some ongoing) studies opening up new scopes of research involving a wide variety of organisms and viruses, which are likely to receive more attention in the coming years. KEY POINTS: • Organisms and viruses can be active or passive players in heritage conservation • Biotreatment and ecosystem service studies involving organisms and viruses are shown • Green deal, health, ecosystem services, and global change may shape future research.
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Affiliation(s)
- Patricia Sanmartín
- grid.11794.3a0000000109410645GEMAP (GI-1243), Departamento de Edafoloxía e Química Agrícola, Facultade de Farmacia, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain
- grid.11794.3a0000000109410645CRETUS, Universidade de Santiago de Compostela, Santiago de Compostela, Spain
| | - Pilar Bosch-Roig
- grid.157927.f0000 0004 1770 5832Instituto Universitario de Restauración del Patrimonio, Dpto. Conservación y Restauración del Patrimonio, Universitat Politècnica de València, 46022 Valencia, Spain
| | - Domenico Pangallo
- grid.419303.c0000 0001 2180 9405Institute of Molecular Biology, Slovak Academy of Sciences, Dúbravská cesta 21, 845 51 Bratislava, Slovakia
- Caravella, s.r.o., Tupolevova 2, 851 01 Bratislava, Slovakia
| | - Lucia Kraková
- grid.419303.c0000 0001 2180 9405Institute of Molecular Biology, Slovak Academy of Sciences, Dúbravská cesta 21, 845 51 Bratislava, Slovakia
| | - Miguel Serrano
- grid.11794.3a0000000109410645Department of Botany, Faculty of Pharmacy, University of Santiago de Compostela, 15782 Santiago de Compostela, Spain
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16
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Geweely NS. New frontiers review of some recent conservation techniques of organic and inorganic archaeological artefacts against microbial deterioration. Front Microbiol 2023; 14:1146582. [PMID: 37007519 PMCID: PMC10060858 DOI: 10.3389/fmicb.2023.1146582] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 02/13/2023] [Indexed: 03/18/2023] Open
Abstract
The information on the advances and technology of some recent conservation methods (2020–2023) of organic and inorganic archaeological objects against microbial deterioration is recorded. An outline of comparative new protective methods for conserving plant-origin organic artefacts {Fibers (manuscripts, textile) and wood}, animal-origin organic artefacts (painting, parchment and mummies) and inorganic stone artefacts were investigated. The work not only contributes to the development of safe revolutionary ways for more efficient safe conservation of items of historical and cultural worth but also serves as a significant diagnostic signature for detecting the sorts of microbial identification and incidents in antiques. Biological technologies (environmentally friendly green biocides) are the most used recent, efficient and safe strategy acceptable as alternatives to stop microbial deterioration and prevent any potential interactions between the biological agent and the artefacts. Also, a synergistic effect of combining natural biocides with mechanical cleaning or chemical treatments was suggested. The recommended exploration techniques should be considered for future applications.
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17
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Zhang Y, Su M, Wu F, Gu JD, Li J, He D, Guo Q, Cui H, Zhang Q, Feng H. Diversity and Composition of Culturable Microorganisms and Their Biodeterioration Potentials in the Sandstone of Beishiku Temple, China. Microorganisms 2023; 11:microorganisms11020429. [PMID: 36838394 PMCID: PMC9965415 DOI: 10.3390/microorganisms11020429] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Revised: 02/03/2023] [Accepted: 02/04/2023] [Indexed: 02/11/2023] Open
Abstract
Microbial colonization on stone monuments leads to subsequent biodeterioration; determining the microbe diversity, compositions, and metabolic capacities is essential for understanding biodeterioration mechanisms and undertaking heritage management. Here, samples of epilithic biofilm and naturally weathered and exfoliated sandstone particles from different locations at the Beishiku Temple were collected to investigate bacterial and fungal community diversity and structure using a culture-based method. The biodeterioration potential of isolated fungal strains was analyzed in terms of pigmentation, calcite dissolution, organic acids, biomineralization ability, and biocide susceptibility. The results showed that the diversities and communities of bacteria and fungi differed for the different sample types from different locations. The population of culturable microorganisms in biofilm samples was more abundant than that present in the samples exposed to natural weathering. The environmental temperature, relative humidity, and pH were closely related to the variation in and distribution of microbial communities. Fungal biodeterioration tests showed that isolated strains four and five were pigment producers and capable of dissolving carbonates, respectively. Their biomineralization through the precipitation of calcium oxalate and calcite carbonate could be potentially applied as a biotechnology for stone heritage consolidation and the mitigation of weathering for monuments. This study adds to our understanding of culturable microbial communities and the bioprotection potential of fungal biomineralization.
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Affiliation(s)
- Yong Zhang
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Min Su
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Fasi Wu
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang 736200, China
- Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang Academy, Dunhuang 736200, China
- Correspondence: (F.W.); (H.F.)
| | - Ji-Dong Gu
- Environmental Science and Engineering Group, Guangdong Technion—Israel Institute of Technology, Shantou 515063, China
- Guangdong Provincial Key Laboratory of Materials and Technologies for Energy Conversion, Guangdong Technion—Israel Institute of Technology, Shantou 515063, China
| | - Jie Li
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang 736200, China
- Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang Academy, Dunhuang 736200, China
| | - Dongpeng He
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang 736200, China
- Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang Academy, Dunhuang 736200, China
| | - Qinglin Guo
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang 736200, China
- Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang Academy, Dunhuang 736200, China
| | - Huiping Cui
- National Research Center for Conservation of Ancient Wall Paintings and Earthen Sites, Department of Conservation Research, Dunhuang Academy, Dunhuang 736200, China
- Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang Academy, Dunhuang 736200, China
| | - Qi Zhang
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
| | - Huyuan Feng
- MOE Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou 730000, China
- Gansu Provincial Research Center for Conservation of Dunhuang Cultural Heritage, Dunhuang Academy, Dunhuang 736200, China
- Correspondence: (F.W.); (H.F.)
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18
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Isola D, Prigione VP, Zucconi L, Varese GC, Poli A, Turchetti B, Canini F. Knufia obscura sp. nov. and Knufia victoriae sp. nov., two new species from extreme environments. Int J Syst Evol Microbiol 2022; 72. [DOI: 10.1099/ijsem.0.005530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Six strains of black meristematic fungi were isolated from Antarctic soils, gasoline car tanks and from the marine alga Flabellia petiolata. These fungi were characterized by morphological, physiological and phylogenetic analyses. According to the maximum-likelihood analysis reconstructed with ITS and LSU sequences, these strains belonged to the genus Knufia. Knufia obscura sp. nov. (holotype CBS 148926) and Knufia victoriae sp. nov. (holotype CBS 149015) are proposed as two novel species and descriptions of their morphological, physiological and phylogenetic features are presented. Based on the maximum-likelihood analyses, K. obscura was closely related to Knufia hypolithi (99 % bootstrap support), while K. victoriae clustered in the clade of Knufia cryptophialidica and Knufia perfecta (93 % bootstrap support). Knufia victoriae, recorded in Antarctic soil samples, had a psychrophilic behaviour, with optimal growth between 10 and 15 °C and no growth recorded at 20 °C. Knufia obscura, from a gasoline car tank and algae, displayed optimal growth between 20 and 25 °C and was more tolerant to salinity than K. victoriae.
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Affiliation(s)
- Daniela Isola
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell’Università, Viterbo 01100, Italy
| | - Valeria Paola Prigione
- Department of Life Sciences and Systems Biology, Mycotheca Universitatis Taurinensis, University of Torino, Viale Mattioli 25, 10125, Torino, Italy
| | - Laura Zucconi
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell’Università, Viterbo 01100, Italy
| | - Giovanna Cristina Varese
- Department of Life Sciences and Systems Biology, Mycotheca Universitatis Taurinensis, University of Torino, Viale Mattioli 25, 10125, Torino, Italy
| | - Anna Poli
- Department of Life Sciences and Systems Biology, Mycotheca Universitatis Taurinensis, University of Torino, Viale Mattioli 25, 10125, Torino, Italy
| | - Benedetta Turchetti
- Department of Agricultural, Food and Environmental Sciences, Industrial Yeasts Collection DBVPG, University of Perugia, Borgo XX Giugno, 74, 06121, Perugia, Italy
| | - Fabiana Canini
- Department of Ecological and Biological Sciences, University of Tuscia, Largo dell’Università, Viterbo 01100, Italy
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He J, Zhang N, Shen X, Muhammad A, Shao Y. Deciphering environmental resistome and mobilome risks on the stone monument: A reservoir of antimicrobial resistance genes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:156443. [PMID: 35660621 DOI: 10.1016/j.scitotenv.2022.156443] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 05/30/2022] [Accepted: 05/30/2022] [Indexed: 06/15/2023]
Abstract
Antimicrobial resistance (AMR) in the environment has attracted increasing attention as an emerging global threat to public health. Stone is an essential ecosystem in nature and also an important material for human society, having architectural and aesthetic values. However, little is known about the AMR in stone ecosystems, particularly in the stone monument, where antimicrobials are often applied against biodeterioration. Here, we provide the first detailed metagenomic study of AMR genes across different types of biodeteriorated stone monuments, which revealed abundant and diverse AMR genes conferring resistance to drugs (antibiotics), biocides, and metals. Totally, 132 AMR subtypes belonging to 27 AMR types were detected including copper-, rifampin-, and aminocoumarins-resistance genes, of which diversity was mainly explained by the spatial turnover (replacement of genes between samples) rather than nestedness (loss of nested genes between samples). Source track analysis confirms that stone resistomes are likely driven by anthropogenic activities across stone heritage areas. We also detected various mobile genetic elements (namely mobilome, e.g., prophages, plasmids, and insertion sequences) that could accelerate replication and horizontal transfer of AMR genes. Host-tracking analysis further identified multiple biodeterioration-related bacterial genera such as Pseudonocardia, Sphingmonas, and Streptomyces as the major hosts of resistome. Taken together, these findings highlight that stone microbiota is one of the natural reservoirs of antimicrobial-resistant hazards, and the diverse resistome and mobilome carried by active biodeteriogens may improve their adaptation on stone and even deactivate the antimicrobials applied against biodeterioration. This enhanced knowledge may also provide novel and specific avenues for environmental management and stone heritage protection.
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Affiliation(s)
- Jintao He
- Max Planck Partner Group, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, China
| | - Nan Zhang
- Max Planck Partner Group, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, China
| | - Xiaoqiang Shen
- Max Planck Partner Group, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, China
| | - Abrar Muhammad
- Max Planck Partner Group, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, China
| | - Yongqi Shao
- Max Planck Partner Group, Faculty of Agriculture, Life and Environmental Sciences, Zhejiang University, China; Key Laboratory for Molecular Animal Nutrition, Ministry of Education, China.
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20
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Black Fungi on Stone-Built Heritage: Current Knowledge and Future Outlook. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12083969] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Black fungi are considered as one of the main group of microorganisms responsible for the biodeterioration of stone cultural heritage artifacts. In this paper, we provide a critical analysis and review of more than 30 years of studies on black fungi isolated from stone-built heritage from 1990 to date. More than 109 papers concerning the fungal biodeterioration activity of stone were analysed. The main findings were a check list of the black fungal taxa involved in the biodeterioration of stone-built heritage, with a particular reference to meristematic black fungi, the main biodeterioration pattern attributed to them, and the methods of study including the new molecular advances. A particular focus was to discuss the current approaches to control black fungi from stone-built heritage and future perspectives. Black fungi are notoriously hard to remove or mitigate, so new methods of study and of control are needed, but it is also important to combine classical methods with new approaches to improve current knowledge to implement future conservation strategies.
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Fungi Affecting Wall Paintings of Historical Value: A Worldwide Meta-Analysis of Their Detected Diversity. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12062988] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Wall paintings have been a cultural expression of human creativity throughout history. Their degradation or destruction represents a loss to the world’s cultural heritage, and fungi have been identified as a major contributor to their decay. We provide a critical review of fungi isolated from worldwide wall paintings between 1961–2021. One-hundred three scientific papers were reviewed focusing on fungal diversity, isolation protocols, and spatial distribution of data. The study sites were grouped into five environmental categories on the basis of the expected major microclimatic conditions (temperature, relative humidity, ventilation), and the possible relationship with the species found was investigated. The highest number of records were localized in Europe, with 38 sites on a total of 74, 20 of which were from Italy. A total of 378 fungal entries were obtained, consisting of 1209 records, belonging to 260 different species and 173 genera. The accuracy level in taxa determination was highly variable among different papers analyzed. Data showed a dominance of Ascomycota, mainly of orders Eurotiales and Hypocreales probably due to their wide distribution and easily air dispersed spores and due to the possible pitfalls linked to the isolation methods, favoring rapidly growing taxa. Statistical analyses revealed that fungal communities were not strictly linked to environmental categories with different ventilation, temperature, and humidity. Such findings may be due to the wide geographical area, the wide heterogeneity of the data, and/or the absence of standardized sampling and analyses protocols. They could also be the result of the dominance of some prevailing factors in the various sites that mask the influence one of each other.
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