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Santos AS, Pereira PH, Abrantes PP, Farina C, Maia Neto PA, de Melo e Souza R. Time-Dependent Effective Hamiltonians for Light-Matter Interactions. ENTROPY (BASEL, SWITZERLAND) 2024; 26:527. [PMID: 38920535 PMCID: PMC11203030 DOI: 10.3390/e26060527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Revised: 06/12/2024] [Accepted: 06/14/2024] [Indexed: 06/27/2024]
Abstract
In this paper, we present a systematic approach to building useful time-dependent effective Hamiltonians in molecular quantum electrodynamics. The method is based on considering part of the system as an open quantum system and choosing a convenient unitary transformation based on the evolution operator. We illustrate our formalism by obtaining four Hamiltonians, each suitable to a different class of applications. We show that we may treat several effects of molecular quantum electrodynamics with a direct first-order perturbation theory. In addition, our effective Hamiltonians shed light on interesting physical aspects that are not explicit when employing more standard approaches. As applications, we discuss three examples: two-photon spontaneous emission, resonance energy transfer, and dispersion interactions.
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Affiliation(s)
- Aroaldo S. Santos
- Instituto de Física, Universidade Federal Fluminense, Niterói 24210-346, Rio de Janeiro, Brazil; (A.S.S.); (P.H.P.); (R.d.M.e.S.)
- Instituto Federal do Paraná, Telêmaco Borba 84269-090, Paraná, Brazil
| | - Pedro H. Pereira
- Instituto de Física, Universidade Federal Fluminense, Niterói 24210-346, Rio de Janeiro, Brazil; (A.S.S.); (P.H.P.); (R.d.M.e.S.)
| | - Patrícia P. Abrantes
- Instituto de Física, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-972, Rio de Janeiro, Brazil; (P.P.A.); (C.F.)
| | - Carlos Farina
- Instituto de Física, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-972, Rio de Janeiro, Brazil; (P.P.A.); (C.F.)
| | - Paulo A. Maia Neto
- Instituto de Física, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-972, Rio de Janeiro, Brazil; (P.P.A.); (C.F.)
| | - Reinaldo de Melo e Souza
- Instituto de Física, Universidade Federal Fluminense, Niterói 24210-346, Rio de Janeiro, Brazil; (A.S.S.); (P.H.P.); (R.d.M.e.S.)
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Draviana HT, Fitriannisa I, Khafid M, Krisnawati DI, Widodo, Lai CH, Fan YJ, Kuo TR. Size and charge effects of metal nanoclusters on antibacterial mechanisms. J Nanobiotechnology 2023; 21:428. [PMID: 37968705 PMCID: PMC10648733 DOI: 10.1186/s12951-023-02208-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Accepted: 11/08/2023] [Indexed: 11/17/2023] Open
Abstract
Nanomaterials, specifically metal nanoclusters (NCs), are gaining attention as a promising class of antibacterial agents. Metal NCs exhibit antibacterial properties due to their ultrasmall size, extensive surface area, and well-controlled surface ligands. The antibacterial mechanisms of metal NCs are influenced by two primary factors: size and surface charge. In this review, we summarize the impacts of size and surface charge of metal NCs on the antibacterial mechanisms, their interactions with bacteria, and the factors that influence their antibacterial effects against both gram-negative and gram-positive bacteria. Additionally, we highlight the mechanisms that occur when NCs are negatively or positively charged, and provide examples of their applications as antibacterial agents. A better understanding of relationships between antibacterial activity and the properties of metal NCs will aid in the design and synthesis of nanomaterials for the development of effective antibacterial agents against bacterial infections. Based on the remarkable achievements in the design of metal NCs, this review also presents conclusions on current challenges and future perspectives of metal NCs for both fundamental investigations and practical antibacterial applications.
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Affiliation(s)
- Hanny Tika Draviana
- Graduate Institute of Nanomedicine and Medical Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei, 11031, Taiwan
- International PhD Program in Biomedical Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei, 11031, Taiwan
| | - Istikhori Fitriannisa
- Graduate Institute of Nanomedicine and Medical Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei, 11031, Taiwan
- International PhD Program in Biomedical Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei, 11031, Taiwan
| | - Muhamad Khafid
- Department of Nursing, Faculty of Nursing and Midwivery, Universitas Nahdlatul Ulama Surabaya, Surabaya, 60237, East Java, Indonesia
| | - Dyah Ika Krisnawati
- Dharma Husada Nursing Academy, Kediri, 64117, East Java, Indonesia
- Department of Health Analyst, Faculty of Health, Universitas Nahdlatul Ulama Surabaya, Surabaya, 60237, East Java, Indonesia
| | - Widodo
- Sekolah Tinggi Teknologi Pomosda, Nganjuk, 64483, East Java, Indonesia
| | - Chien-Hung Lai
- Department of Physical Medicine and Rehabilitation, School of Medicine, College of Medicine, Taipei Medical University, Taipei, 11031, Taiwan.
- Department of Physical Medicine and Rehabilitation, Taipei Medical University Hospital, Taipei, 11031, Taiwan.
- Taipei Neuroscience Institute, Taipei Medical University, Taipei, 11031, Taiwan.
| | - Yu-Jui Fan
- International PhD Program in Biomedical Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei, 11031, Taiwan.
- School of Biomedical Engineering, Taipei Medical University, Taipei, 11031, Taiwan.
- Center for Precision Health and Quantitative Sciences, Taipei Medical University Hospital, Taipei, 11031, Taiwan.
| | - Tsung-Rong Kuo
- Graduate Institute of Nanomedicine and Medical Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei, 11031, Taiwan.
- International PhD Program in Biomedical Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei, 11031, Taiwan.
- Precision Medicine and Translational Cancer Research Center, Taipei Medical University Hospital, Taipei, 11031, Taiwan.
- Stanford Byers Center for Biodesign, Stanford University, Stanford, CA, 94305, USA.
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Arik N, Elcin E, Tezcaner A, Oktem HA. Optimization of whole-cell bacterial bioreporter immobilization on electrospun cellulose acetate (CA) and polycaprolactone (PCL) fibers for arsenic detection. ENVIRONMENTAL MONITORING AND ASSESSMENT 2023; 195:666. [PMID: 37178337 DOI: 10.1007/s10661-023-11227-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Accepted: 04/06/2023] [Indexed: 05/15/2023]
Abstract
Arsenic contamination is a critical global problem, and its widespread environmental detection is becoming a prominent issue. Herein, electrospun fibers of cellulose acetate (CA) and polycaprolactone (PCL) were successfully fabricated and used as the support material for immobilization of arsenic-sensing bacterial bioreporter for the first time. To date, no attempt has been made to immobilize fluorescent whole-cell bioreporter cells on electrospun fibers for arsenic detection. CA and PCL electrospun fibers were fabricated via traditional electrospinning technique and characterized by scanning electron microscopy (SEM), Fourier transform infrared spectroscopy (FTIR), and contact angle meter. Following immobilization of the bacterial bioreporter cells, the immobilized bacteria were also characterized by viability assay using AlamarBlue. The effects of growth phase and cell concentration on the fluorescence response of fiber-immobilized arsenic bioreporters to arsenic were also investigated. After immobilization of arsenic bioreporters on 10 wt% PCL fiber, 91% of bacterial cells remained viable, while this value was 55.4% for cells immobilized on 12.5 wt% CA fiber. Bioreporter cells in the exponential growth phase were shown to be more sensitive to arsenic compared to aged cells. While both the electropsun PCL- and CA-immobilized bioreporters successfully detected 50 and 100 µg/L of arsenite (As (III)) concentrations, the PCL-immobilized bioreporter showed better fluorescence performance which should be investigated in future studies. This study helps to fill some gaps in the literature and demonstrates the potential for using electrospun fiber-immobilized arsenic whole-cell bioreporter for arsenic detection in water.
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Affiliation(s)
- Nehir Arik
- Department of Molecular Biology and Genetics, Middle East Technical University, 06800, Ankara, Turkey
| | - Evrim Elcin
- Department of Agricultural Biotechnology, Aydın Adnan Menderes University, 09970, Aydın, Turkey
| | - Aysen Tezcaner
- Department of Engineering Sciences, Middle East Technical University, 06800, Ankara, Turkey
| | - Hüseyin Avni Oktem
- Department of Biological Sciences, Middle East Technical University, 06800, Ankara, Turkey.
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Fathiah Mohamed Zuki, Pourzolfaghar H, Edyvean RGJ, Hernandez JE. Interpretation of Initial Adhesion of Pseudomonas putida on Hematite and Quartz Using Surface Thermodynamics, DLVO, and XDLVO Theories. SURFACE ENGINEERING AND APPLIED ELECTROCHEMISTRY 2022. [DOI: 10.3103/s1068375522050131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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