1
|
Di Masi S, De Benedetto GE, Malitesta C. Optimisation of electrochemical sensors based on molecularly imprinted polymers: from OFAT to machine learning. Anal Bioanal Chem 2024; 416:2261-2275. [PMID: 38117322 DOI: 10.1007/s00216-023-05085-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2023] [Revised: 11/28/2023] [Accepted: 11/29/2023] [Indexed: 12/21/2023]
Abstract
Molecularly imprinted polymers (MIPs) rely on synthetic engineered materials able to selectively bind and intimately recognise a target molecule through its size and functionalities. The way in which MIPs interact with their targets, and the magnitude of this interaction, is closely linked to the chemical properties derived during the polymerisation stages, which tailor them to their specific target. Hence, MIPs are in-deep studied in terms of their sensitivity and cross-reactivity, further being used for monitoring purposes of analytes in complex analytical samples. As MIPs are involved in sensor development within different approaches, a systematic optimisation and rational data-driven sensing is fundamental to obtaining a best-performant MIP sensor. In addition, the closer integration of MIPs in sensor development requires that the inner properties of the materials in terms of sensitivity and selectivity are maintained in the presence of competitive molecules, which focus is currently opened. Identifying computational models capable of predicting and reporting the best-performant configuration of electrochemical sensors based on MIPs is of immense importance. The application of chemometrics using design of experiments (DoE) is nowadays increasingly adopted during optimisation problems, which largely reduce the number of experimental trials. These approaches, together with the emergent machine learning (ML) tool in sensor data processing, represent the future trend in design and management of point-of-care configurations based on MIP sensing. This review provides an overview on the recent application of chemometrics tools in optimisation problems during development and analytical assessment of electrochemical sensors based on MIP receptors. A comprehensive discussion is first presented to cover the recent advancements on response surface methodologies (RSM) in optimisation studies of MIPs design. Therefore, the recent advent of machine learning in sensor data processing will be focused on MIPs development and analytical detection in sensors.
Collapse
Affiliation(s)
- Sabrina Di Masi
- Laboratorio di Chimica Analitica, Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali, Università del Salento, Lecce, Italy
| | - Giuseppe Egidio De Benedetto
- Laboratorio di Spettrometria di Massa Analitica e Isotopica, Dipartimento di Beni Culturali, Università del Salento, Lecce, Italy
| | - Cosimino Malitesta
- Laboratorio di Chimica Analitica, Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali, Università del Salento, Lecce, Italy.
| |
Collapse
|
2
|
Kramat J, Kraus L, Gunawan VJ, Smyej E, Froehlich P, Weber TE, Spiehl D, Koeppl H, Blaeser A, Suess B. Sensing Levofloxacin with an RNA Aptamer as a Bioreceptor. BIOSENSORS 2024; 14:56. [PMID: 38275309 PMCID: PMC10813692 DOI: 10.3390/bios14010056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 01/11/2024] [Accepted: 01/12/2024] [Indexed: 01/27/2024]
Abstract
To combat the growing threat of antibiotic resistance, environmental testing for antibiotic contamination is gaining an increasing role. This study aims to develop an easy-to-use assay for the detection of the fluoroquinolone antibiotic levofloxacin. Levofloxacin is used in human and veterinary medicine and has been detected in wastewater and river water. An RNA aptamer against levofloxacin was selected using RNA Capture-SELEX. The 73 nt long aptamer folds into three stems with a central three-way junction. It binds levofloxacin with a Kd of 6 µM and discriminates the closely related compound ciprofloxacin. Furthermore, the selection process was analyzed using a next-generation sequencing approach to better understand the sequence evolution throughout the selection. The aptamer was used as a bioreceptor for the development of a lateral flow assay. The biosensor exploited the innate characteristic of RNA Capture-SELEX to select aptamers that displace a complementary DNA oligonucleotide upon ligand binding. The lateral flow assay achieved a limit of visual detection of 100 µM. While the sensitivity of this assay constrains its immediate use in environmental testing, the present study can serve as a template for the selection of RNA aptamer-based biosensors.
Collapse
Affiliation(s)
- Janice Kramat
- Synthetic RNA Biology, Department of Biology, Technical University of Darmstadt, 64287 Darmstadt, Germany
| | - Leon Kraus
- Synthetic RNA Biology, Department of Biology, Technical University of Darmstadt, 64287 Darmstadt, Germany
| | - Vincent J. Gunawan
- Synthetic RNA Biology, Department of Biology, Technical University of Darmstadt, 64287 Darmstadt, Germany
| | - Elias Smyej
- Synthetic RNA Biology, Department of Biology, Technical University of Darmstadt, 64287 Darmstadt, Germany
| | - Philipp Froehlich
- Self-Organizing Systems, Department of Electrical Engineering and Information Technology, Technical University of Darmstadt, 64283 Darmstadt, Germany
| | - Tim E. Weber
- Institute for BioMedical Printing Technologies, Technical University of Darmstadt, 64289 Darmstadt, Germany
| | - Dieter Spiehl
- Institute for BioMedical Printing Technologies, Technical University of Darmstadt, 64289 Darmstadt, Germany
- Centre for Synthetic Biology, Technical University of Darmstadt, 64289 Darmstadt, Germany
| | - Heinz Koeppl
- Self-Organizing Systems, Department of Electrical Engineering and Information Technology, Technical University of Darmstadt, 64283 Darmstadt, Germany
- Centre for Synthetic Biology, Technical University of Darmstadt, 64289 Darmstadt, Germany
| | - Andreas Blaeser
- Institute for BioMedical Printing Technologies, Technical University of Darmstadt, 64289 Darmstadt, Germany
- Centre for Synthetic Biology, Technical University of Darmstadt, 64289 Darmstadt, Germany
| | - Beatrix Suess
- Synthetic RNA Biology, Department of Biology, Technical University of Darmstadt, 64287 Darmstadt, Germany
- Centre for Synthetic Biology, Technical University of Darmstadt, 64289 Darmstadt, Germany
| |
Collapse
|
3
|
Niu H, Xu M, Tu P, Xu Y, Li X, Xing M, Chen Z, Wang X, Lou X, Wu L, Sun S. Emerging Contaminants: An Emerging Risk Factor for Diabetes Mellitus. TOXICS 2024; 12:47. [PMID: 38251002 PMCID: PMC10819641 DOI: 10.3390/toxics12010047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 12/15/2023] [Accepted: 12/17/2023] [Indexed: 01/23/2024]
Abstract
Emerging contaminants have been increasingly recognized as critical determinants in global public health outcomes. However, the intricate relationship between these contaminants and glucose metabolism remains to be fully elucidated. The paucity of comprehensive clinical data, coupled with the need for in-depth mechanistic investigations, underscores the urgency to decipher the precise molecular and cellular pathways through which these contaminants potentially mediate the initiation and progression of diabetes mellitus. A profound understanding of the epidemiological impact of these emerging contaminants, as well as the elucidation of the underlying mechanistic pathways, is indispensable for the formulation of evidence-based policy and preventive interventions. This review systematically aggregates contemporary findings from epidemiological investigations and delves into the mechanistic correlates that tether exposure to emerging contaminants, including endocrine disruptors, perfluorinated compounds, microplastics, and antibiotics, to glycemic dysregulation. A nuanced exploration is undertaken focusing on potential dietary sources and the consequential role of the gut microbiome in their toxic effects. This review endeavors to provide a foundational reference for future investigations into the complex interplay between emerging contaminants and diabetes mellitus.
Collapse
Affiliation(s)
- Huixia Niu
- Zhejiang Provincial Center for Disease Control and Prevention, 3399 Bin Sheng Road, Binjiang District, Hangzhou 310051, China; (H.N.); (P.T.); (X.L.); (M.X.); (Z.C.); (X.W.); (X.L.)
| | - Manjin Xu
- School of Public Health, Xiamen University, Xiang’an South Road, Xiang’an District, Xiamen 361102, China; (M.X.); (Y.X.)
| | - Pengcheng Tu
- Zhejiang Provincial Center for Disease Control and Prevention, 3399 Bin Sheng Road, Binjiang District, Hangzhou 310051, China; (H.N.); (P.T.); (X.L.); (M.X.); (Z.C.); (X.W.); (X.L.)
| | - Yunfeng Xu
- School of Public Health, Xiamen University, Xiang’an South Road, Xiang’an District, Xiamen 361102, China; (M.X.); (Y.X.)
| | - Xueqing Li
- Zhejiang Provincial Center for Disease Control and Prevention, 3399 Bin Sheng Road, Binjiang District, Hangzhou 310051, China; (H.N.); (P.T.); (X.L.); (M.X.); (Z.C.); (X.W.); (X.L.)
| | - Mingluan Xing
- Zhejiang Provincial Center for Disease Control and Prevention, 3399 Bin Sheng Road, Binjiang District, Hangzhou 310051, China; (H.N.); (P.T.); (X.L.); (M.X.); (Z.C.); (X.W.); (X.L.)
| | - Zhijian Chen
- Zhejiang Provincial Center for Disease Control and Prevention, 3399 Bin Sheng Road, Binjiang District, Hangzhou 310051, China; (H.N.); (P.T.); (X.L.); (M.X.); (Z.C.); (X.W.); (X.L.)
| | - Xiaofeng Wang
- Zhejiang Provincial Center for Disease Control and Prevention, 3399 Bin Sheng Road, Binjiang District, Hangzhou 310051, China; (H.N.); (P.T.); (X.L.); (M.X.); (Z.C.); (X.W.); (X.L.)
| | - Xiaoming Lou
- Zhejiang Provincial Center for Disease Control and Prevention, 3399 Bin Sheng Road, Binjiang District, Hangzhou 310051, China; (H.N.); (P.T.); (X.L.); (M.X.); (Z.C.); (X.W.); (X.L.)
| | - Lizhi Wu
- Zhejiang Provincial Center for Disease Control and Prevention, 3399 Bin Sheng Road, Binjiang District, Hangzhou 310051, China; (H.N.); (P.T.); (X.L.); (M.X.); (Z.C.); (X.W.); (X.L.)
| | - Shengzhi Sun
- School of Public Health, Capital Medical University, Beijing 100069, China
| |
Collapse
|
4
|
Massaglia G, Spisni G, Pirri CF, Quaglio M. Microbial Fuel Cells as Effective Tools for Energy Recovery and Antibiotic Detection in Water and Food. MICROMACHINES 2023; 14:2137. [PMID: 38138306 PMCID: PMC10745599 DOI: 10.3390/mi14122137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Revised: 11/17/2023] [Accepted: 11/20/2023] [Indexed: 12/24/2023]
Abstract
This work demonstrates that microbial fuel cells (MFCs), optimized for energy recovery, can be used as an effective tool to detect antibiotics in water-based environments. In MFCs, electroactive biofilms function as biocatalysts by converting the chemical energy of organic matter, which serves as the fuel, into electrical energy. The efficiency of the conversion process can be significantly affected by the presence of contaminants that act as toxicants to the biofilm. The present work demonstrates that MFCs can successfully detect antibiotic residues in water and water-based electrolytes containing complex carbon sources that may be associated with the food industry. Specifically, honey was selected as a model fuel to test the effectiveness of MFCs in detecting antibiotic contamination, and tetracycline was used as a reference antibiotic within this study. The results show that MFCs not only efficiently detect the presence of tetracycline in both acetate and honey-based electrolytes but also recover the same performance after each exposure cycle, proving to be a very robust and reliable technology for both biosensing and energy recovery.
Collapse
Affiliation(s)
- Giulia Massaglia
- Department of Applied Science and Technology (DISAT), Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Torino, Italy; (G.S.); (C.F.P.)
- Center for Sustainable Future Technologies@Polito, Istituto Italiano di Tecnologia, Environment Park, Building B2 Via Livorno 60, 10144 Torino, Italy
| | - Giacomo Spisni
- Department of Applied Science and Technology (DISAT), Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Torino, Italy; (G.S.); (C.F.P.)
- Center for Sustainable Future Technologies@Polito, Istituto Italiano di Tecnologia, Environment Park, Building B2 Via Livorno 60, 10144 Torino, Italy
| | - Candido F. Pirri
- Department of Applied Science and Technology (DISAT), Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Torino, Italy; (G.S.); (C.F.P.)
- Center for Sustainable Future Technologies@Polito, Istituto Italiano di Tecnologia, Environment Park, Building B2 Via Livorno 60, 10144 Torino, Italy
| | - Marzia Quaglio
- Department of Applied Science and Technology (DISAT), Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 Torino, Italy; (G.S.); (C.F.P.)
- Center for Sustainable Future Technologies@Polito, Istituto Italiano di Tecnologia, Environment Park, Building B2 Via Livorno 60, 10144 Torino, Italy
| |
Collapse
|