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Mampitiya L, Rozumbetov K, Rathnayake N, Erkudov V, Esimbetov A, Arachchi S, Kantamaneni K, Hoshino Y, Rathnayake U. Artificial intelligence to predict soil temperatures by development of novel model. Sci Rep 2024; 14:9889. [PMID: 38688985 PMCID: PMC11061126 DOI: 10.1038/s41598-024-60549-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Accepted: 04/24/2024] [Indexed: 05/02/2024] Open
Abstract
Soil temperatures at both surface and various depths are important in changing environments to understand the biological, chemical, and physical properties of soil. This is essential in reaching food sustainability. However, most of the developing regions across the globe face difficulty in establishing solid data measurements and records due to poor instrumentation and many other unavoidable reasons such as natural disasters like droughts, floods, and cyclones. Therefore, an accurate prediction model would fix these difficulties. Uzbekistan is one of the countries that is concerned about climate change due to its arid climate. Therefore, for the first time, this research presents an integrated model to predict soil temperature levels at the surface and 10 cm depth based on climatic factors in Nukus, Uzbekistan. Eight machine learning models were trained in order to understand the best-performing model based on widely used performance indicators. Long Short-Term Memory (LSTM) model performed in accurate predictions of soil temperature levels at 10 cm depth. More importantly, the models developed here can predict temperature levels at 10 cm depth with the measured climatic data and predicted surface soil temperature levels. The model can predict soil temperature at 10 cm depth without any ground soil temperature measurements. The developed model can be effectively used in planning applications in reaching sustainability in food production in arid areas like Nukus, Uzbekistan.
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Affiliation(s)
- Lakindu Mampitiya
- Water Resources Management and Soft Computing Research Laboratory, Athurugiriya, Millennium City, 10150, Sri Lanka
| | - Kenjabek Rozumbetov
- Department of Anatomy, Physiology and Biochemistry of Animals, Nukus Branch of Samarkand State University of Veterinary Medicine, Animal Husbandry and Biotechnology, 230100, Nukus, Uzbekistan
| | - Namal Rathnayake
- Department of Civil Engineering, Faculty of Engineering, The University of Tokyo, 1 Chome-1-1 Yayoi, Bunkyo City, Tokyo, 113-8656, Japan
| | - Valery Erkudov
- Department of Normal Physiology, St. Petersburg State Pediatric Medical University, 194100, Saint Petersburg, Russia
| | - Adilbay Esimbetov
- Department of Anatomy, Physiology and Biochemistry of Animals, Nukus Branch of Samarkand State University of Veterinary Medicine, Animal Husbandry and Biotechnology, 230100, Nukus, Uzbekistan
| | - Shanika Arachchi
- Department of Electronics and Mechanical Engineering, Faculty of Engineering and Technology, Atlantic Technological University, Letterkenny, F92 FC93, Ireland
| | - Komali Kantamaneni
- UN-SPIDER-UK Regional Support Office, University of Central Lancashire, Preston, PR1 2HE, UK
- School of Engineering, University of Central Lancashire, Preston, PR1 2HE, UK
| | - Yukinobu Hoshino
- School of Systems Engineering, Kochi University of Technology, 185 Miyanokuchi, Tosayamada, Kami, Kochi, 782-8502, Japan
| | - Upaka Rathnayake
- Department of Civil Engineering and Construction, Faculty of Engineering and Design, Atlantic Technological University, Sligo, F91 YW50, Ireland.
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Ghosh SK, Khandoker AH. Investigation on explainable machine learning models to predict chronic kidney diseases. Sci Rep 2024; 14:3687. [PMID: 38355876 PMCID: PMC10866953 DOI: 10.1038/s41598-024-54375-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 02/12/2024] [Indexed: 02/16/2024] Open
Abstract
Chronic kidney disease (CKD) is a major worldwide health problem, affecting a large proportion of the world's population and leading to higher morbidity and death rates. The early stages of CKD sometimes present without visible symptoms, causing patients to be unaware. Early detection and treatments are critical in reducing complications and improving the overall quality of life for people afflicted. In this work, we investigate the use of an explainable artificial intelligence (XAI)-based strategy, leveraging clinical characteristics, to predict CKD. This study collected clinical data from 491 patients, comprising 56 with CKD and 435 without CKD, encompassing clinical, laboratory, and demographic variables. To develop the predictive model, five machine learning (ML) methods, namely logistic regression (LR), random forest (RF), decision tree (DT), Naïve Bayes (NB), and extreme gradient boosting (XGBoost), were employed. The optimal model was selected based on accuracy and area under the curve (AUC). Additionally, the SHAP (SHapley Additive exPlanations) and LIME (Local Interpretable Model-agnostic Explanations) algorithms were utilized to demonstrate the influence of the features on the optimal model. Among the five models developed, the XGBoost model achieved the best performance with an AUC of 0.9689 and an accuracy of 93.29%. The analysis of feature importance revealed that creatinine, glycosylated hemoglobin type A1C (HgbA1C), and age were the three most influential features in the XGBoost model. The SHAP force analysis further illustrated the model's visualization of individualized CKD predictions. For further insights into individual predictions, we also utilized the LIME algorithm. This study presents an interpretable ML-based approach for the early prediction of CKD. The SHAP and LIME methods enhance the interpretability of ML models and help clinicians better understand the rationale behind the predicted outcomes more effectively.
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Affiliation(s)
- Samit Kumar Ghosh
- Department of Biomedical Engineering & Biotechnology, Khalifa University, Abu Dhabi, United Arab Emirates.
| | - Ahsan H Khandoker
- Department of Biomedical Engineering & Biotechnology, Khalifa University, Abu Dhabi, United Arab Emirates
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Kulasooriya WKVJB, Ranasinghe RSS, Perera US, Thisovithan P, Ekanayake IU, Meddage DPP. Modeling strength characteristics of basalt fiber reinforced concrete using multiple explainable machine learning with a graphical user interface. Sci Rep 2023; 13:13138. [PMID: 37573410 PMCID: PMC10423212 DOI: 10.1038/s41598-023-40513-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Accepted: 08/11/2023] [Indexed: 08/14/2023] Open
Abstract
This study investigated the importance of applying explainable artificial intelligence (XAI) on different machine learning (ML) models developed to predict the strength characteristics of basalt-fiber reinforced concrete (BFRC). Even though ML is widely adopted in strength prediction in concrete, the black-box nature of predictions hinders the interpretation of results. Among several attempts to overcome this limitation by using explainable AI, researchers have employed only a single explanation method. In this study, we used three tree-based ML models (Decision tree, Gradient Boosting tree, and Light Gradient Boosting Machine) to predict the mechanical strength characteristics (compressive strength, flexural strength, and tensile strength) of basal fiber reinforced concrete (BFRC). For the first time, we employed two explanation methods (Shapley additive explanations (SHAP) and local interpretable model-agnostic explanations (LIME)) to provide explanations for all models. These explainable methods reveal the underlying decision-making criteria of complex machine learning models, improving the end user's trust. The comparison highlights that tree-based models obtained good accuracy in predicting strength characteristics yet, their explanations were different either by the magnitude of feature importance or the order of importance. This disagreement pushes towards complicated decision-making based on ML predictions which further stresses (1) extending XAI-based research in concrete strength predictions, and (2) involving domain experts to evaluate XAI results. The study concludes with the development of a "user-friendly computer application" which enables quick strength prediction of basalt fiber reinforced concrete (BFRC).
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Affiliation(s)
- W K V J B Kulasooriya
- Department of Civil Engineering, Sri Lankan Institute of Information Technology, Malabe, Sri Lanka
| | - R S S Ranasinghe
- Department of Civil Engineering, Sri Lankan Institute of Information Technology, Malabe, Sri Lanka
| | - Udara Sachinthana Perera
- Department of Civil Engineering, Sri Lankan Institute of Information Technology, Malabe, Sri Lanka
| | - P Thisovithan
- Department of Civil Engineering, Sri Lankan Institute of Information Technology, Malabe, Sri Lanka
| | - I U Ekanayake
- Department of Computer Engineering, University of Peradeniya, Kandy, Sri Lanka
| | - D P P Meddage
- Department of Civil Engineering, University of Moratuwa, Moratuwa, Sri Lanka.
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