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Coman DA, Ionita S, Lita I. Evaluation of EEG Signals by Spectral Peak Methods and Statistical Correlation for Mental State Discrimination Induced by Arithmetic Tasks. SENSORS (BASEL, SWITZERLAND) 2024; 24:3316. [PMID: 38894108 PMCID: PMC11174818 DOI: 10.3390/s24113316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Revised: 05/16/2024] [Accepted: 05/20/2024] [Indexed: 06/21/2024]
Abstract
Bringing out brain activity through the interpretation of EEG signals is a challenging problem that involves combined methods of signal analysis. The issue of classifying mental states induced by arithmetic tasks can be solved through various classification methods, using diverse characteristic parameters of EEG signals in the time, frequency, and statistical domains. This paper explores the results of an experiment that aimed to highlight arithmetic mental tasks contained in the PhysioNet database, performed on a group of 36 subjects. The majority of publications on this topic deal with machine learning (ML)-based classification methods with supervised learning support vector machine (SVM) algorithms, K-Nearest Neighbor (KNN), Linear Discriminant Analysis (LDA), and Decision Trees (DTs). Also, there are frequent approaches based on the analysis of EEG data as time series and their classification with Recurrent Neural Networks (RNNs), as well as with improved algorithms such as Long Short-Term Memory (LSTM), Bidirectional Long Short-Term Memory (BLSTM), and Gated Recurrent Units (GRUs). In the present work, we evaluate the classification method based on the comparison of domain limits for two specific characteristics of EEG signals: the statistical correlation of pairs of signals and the size of the spectral peak detected in theta, alpha, and beta bands. This study provides some interpretations regarding the electrical activity of the brain, consolidating and complementing the results of similar research. The classification method used is simple and easy to apply and interpret. The analysis of EEG data showed that the theta and beta frequency bands were the only discriminators between the relaxation and arithmetic calculation states. Notably, the F7 signal, which used the spectral peak criterion, achieved the best classification accuracy (100%) in both theta and beta bands for the subjects with the best results in performing calculations. Also, our study found the Fz signal to be a good sensor in the theta band for mental task discrimination for all subjects in the group with 90% accuracy.
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Affiliation(s)
- Daniela Andreea Coman
- Department of Electronics, Computers and Electrical Engineering, National University of Science and Technology POLITEHNICA Bucharest, 110040 Pitesti, Romania;
- Regional Research and Development Center for Innovative Materials, Processes, and Products for the Automotive Industry (CRC&D-Auto), 110440 Pitesti, Romania
| | - Silviu Ionita
- Department of Electronics, Computers and Electrical Engineering, National University of Science and Technology POLITEHNICA Bucharest, 110040 Pitesti, Romania;
| | - Ioan Lita
- Department of Electronics, Computers and Electrical Engineering, National University of Science and Technology POLITEHNICA Bucharest, 110040 Pitesti, Romania;
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Attallah O. ADHD-AID: Aiding Tool for Detecting Children's Attention Deficit Hyperactivity Disorder via EEG-Based Multi-Resolution Analysis and Feature Selection. Biomimetics (Basel) 2024; 9:188. [PMID: 38534873 DOI: 10.3390/biomimetics9030188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 03/12/2024] [Accepted: 03/13/2024] [Indexed: 03/28/2024] Open
Abstract
The severe effects of attention deficit hyperactivity disorder (ADHD) among adolescents can be prevented by timely identification and prompt therapeutic intervention. Traditional diagnostic techniques are complicated and time-consuming because they are subjective-based assessments. Machine learning (ML) techniques can automate this process and prevent the limitations of manual evaluation. However, most of the ML-based models extract few features from a single domain. Furthermore, most ML-based studies have not examined the most effective electrode placement on the skull, which affects the identification process, while others have not employed feature selection approaches to reduce the feature space dimension and consequently the complexity of the training models. This study presents an ML-based tool for automatically identifying ADHD entitled "ADHD-AID". The present study uses several multi-resolution analysis techniques including variational mode decomposition, discrete wavelet transform, and empirical wavelet decomposition. ADHD-AID extracts thirty features from the time and time-frequency domains to identify ADHD, including nonlinear features, band-power features, entropy-based features, and statistical features. The present study also looks at the best EEG electrode placement for detecting ADHD. Additionally, it looks into the location combinations that have the most significant impact on identification accuracy. Additionally, it uses a variety of feature selection methods to choose those features that have the greatest influence on the diagnosis of ADHD, reducing the classification's complexity and training time. The results show that ADHD-AID has provided scores for accuracy, sensitivity, specificity, F1-score, and Mathew correlation coefficients of 0.991, 0.989, 0.992, 0.989, and 0.982, respectively, in identifying ADHD with 10-fold cross-validation. Also, the area under the curve has reached 0.9958. ADHD-AID's results are significantly higher than those of all earlier studies for the detection of ADHD in adolescents. These notable and trustworthy findings support the use of such an automated tool as a means of assistance for doctors in the prompt identification of ADHD in youngsters.
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Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communications Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria 21937, Egypt
- Wearables, Biosensing and Biosignal Processing Laboratory, Arab Academy for Science, Technology and Maritime Transport, Alexandria 21937, Egypt
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Ahmed MAO, Satar YA, Darwish EM, Zanaty EA. Synergistic integration of Multi-View Brain Networks and advanced machine learning techniques for auditory disorders diagnostics. Brain Inform 2024; 11:3. [PMID: 38219249 PMCID: PMC10788326 DOI: 10.1186/s40708-023-00214-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Accepted: 12/06/2023] [Indexed: 01/16/2024] Open
Abstract
In the field of audiology, achieving accurate discrimination of auditory impairments remains a formidable challenge. Conditions such as deafness and tinnitus exert a substantial impact on patients' overall quality of life, emphasizing the urgent need for precise and efficient classification methods. This study introduces an innovative approach, utilizing Multi-View Brain Network data acquired from three distinct cohorts: 51 deaf patients, 54 with tinnitus, and 42 normal controls. Electroencephalogram (EEG) recording data were meticulously collected, focusing on 70 electrodes attached to an end-to-end key with 10 regions of interest (ROI). This data is synergistically integrated with machine learning algorithms. To tackle the inherently high-dimensional nature of brain connectivity data, principal component analysis (PCA) is employed for feature reduction, enhancing interpretability. The proposed approach undergoes evaluation using ensemble learning techniques, including Random Forest, Extra Trees, Gradient Boosting, and CatBoost. The performance of the proposed models is scrutinized across a comprehensive set of metrics, encompassing cross-validation accuracy (CVA), precision, recall, F1-score, Kappa, and Matthews correlation coefficient (MCC). The proposed models demonstrate statistical significance and effectively diagnose auditory disorders, contributing to early detection and personalized treatment, thereby enhancing patient outcomes and quality of life. Notably, they exhibit reliability and robustness, characterized by high Kappa and MCC values. This research represents a significant advancement in the intersection of audiology, neuroimaging, and machine learning, with transformative implications for clinical practice and care.
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Affiliation(s)
- Muhammad Atta Othman Ahmed
- Department of Computer Science, Faculty of Computers and Information, Luxor University, 85951, Luxor, Egypt.
| | - Yasser Abdel Satar
- Mathematics Department, Faculty of Science, Sohag University, 82511, Sohag, Egypt
| | - Eed M Darwish
- Physics Department, College of Science, Taibah University, Medina, 41411, Saudi Arabia
- Physics Department, Faculty of Science, Sohag University, 82524, Sohag, Egypt
| | - Elnomery A Zanaty
- Department of Computer Science, Faculty of Computers and Artificial Intelligence, Sohag University, 82511, Sohag, Egypt
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Weerasinghe MMA, Wang G, Whalley J, Crook-Rumsey M. Mental stress recognition on the fly using neuroplasticity spiking neural networks. Sci Rep 2023; 13:14962. [PMID: 37696860 PMCID: PMC10495416 DOI: 10.1038/s41598-023-34517-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2022] [Accepted: 05/03/2023] [Indexed: 09/13/2023] Open
Abstract
Mental stress is found to be strongly connected with human cognition and wellbeing. As the complexities of human life increase, the effects of mental stress have impacted human health and cognitive performance across the globe. This highlights the need for effective non-invasive stress detection methods. In this work, we introduce a novel, artificial spiking neural network model called Online Neuroplasticity Spiking Neural Network (O-NSNN) that utilizes a repertoire of learning concepts inspired by the brain to classify mental stress using Electroencephalogram (EEG) data. These models are personalized and tested on EEG data recorded during sessions in which participants listen to different types of audio comments designed to induce acute stress. Our O-NSNN models learn on the fly producing an average accuracy of 90.76% (σ = 2.09) when classifying EEG signals of brain states associated with these audio comments. The brain-inspired nature of the individual models makes them robust and efficient and has the potential to be integrated into wearable technology. Furthermore, this article presents an exploratory analysis of trained O-NSNNs to discover links between perceived and acute mental stress. The O-NSNN algorithm proved to be better for personalized stress recognition in terms of accuracy, efficiency, and model interpretability.
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Affiliation(s)
- Mahima Milinda Alwis Weerasinghe
- School of Engineering, Computer and Mathematical Sciences, Auckland University of Technology, Auckland, New Zealand.
- Brain-Inspired AI and Neuroinformatics Lab, Department of Data Science, Sri Lanka Technological Campus, Padukka, Sri Lanka.
| | - Grace Wang
- School of Psychology and Wellbeing, University of Southern Queensland, Toowoomba, Australia
- Centre for Health Research, University of Southern Queensland, Toowoomba, Australia
| | - Jacqueline Whalley
- Department of Computer Science and Software Engineering, Auckland University of Technology, Auckland, New Zealand
| | - Mark Crook-Rumsey
- Department of Basic and Clinical Neuroscience, King's College London, London, UK
- UK Dementia Research Institute, Centre for Care Research and Technology, Imperial College London, London, UK
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Hemakom A, Atiwiwat D, Israsena P. ECG and EEG based detection and multilevel classification of stress using machine learning for specified genders: A preliminary study. PLoS One 2023; 18:e0291070. [PMID: 37656750 PMCID: PMC10473514 DOI: 10.1371/journal.pone.0291070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Accepted: 07/27/2023] [Indexed: 09/03/2023] Open
Abstract
Mental health, especially stress, plays a crucial role in the quality of life. During different phases (luteal and follicular phases) of the menstrual cycle, women may exhibit different responses to stress from men. This, therefore, may have an impact on the stress detection and classification accuracy of machine learning models if genders are not taken into account. However, this has never been investigated before. In addition, only a handful of stress detection devices are scientifically validated. To this end, this work proposes stress detection and multilevel stress classification models for unspecified and specified genders through ECG and EEG signals. Models for stress detection are achieved through developing and evaluating multiple individual classifiers. On the other hand, the stacking technique is employed to obtain models for multilevel stress classification. ECG and EEG features extracted from 40 subjects (21 females and 19 males) were used to train and validate the models. In the low&high combined stress conditions, RBF-SVM and kNN yielded the highest average classification accuracy for females (79.81%) and males (73.77%), respectively. Combining ECG and EEG, the average classification accuracy increased to at least 87.58% (male, high stress) and up to 92.70% (female, high stress). For multilevel stress classification from ECG and EEG, the accuracy for females was 62.60% and for males was 71.57%. This study shows that the difference in genders influences the classification performance for both the detection and multilevel classification of stress. The developed models can be used for both personal (through ECG) and clinical (through ECG and EEG) stress monitoring, with and without taking genders into account.
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Affiliation(s)
- Apit Hemakom
- Neural Signal Processing Research Team, National Electronics and Computer Technology Center, National Science and Technology Development Agency, Pathumthani, Thailand
| | - Danita Atiwiwat
- Division of Health and Applied Sciences, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, Thailand
| | - Pasin Israsena
- Neural Signal Processing Research Team, National Electronics and Computer Technology Center, National Science and Technology Development Agency, Pathumthani, Thailand
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Roy B, Malviya L, Kumar R, Mal S, Kumar A, Bhowmik T, Hu JW. Hybrid Deep Learning Approach for Stress Detection Using Decomposed EEG Signals. Diagnostics (Basel) 2023; 13:diagnostics13111936. [PMID: 37296788 DOI: 10.3390/diagnostics13111936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2023] [Revised: 05/14/2023] [Accepted: 05/26/2023] [Indexed: 06/12/2023] Open
Abstract
Stress has an impact, not only on a person's physical health, but also on the ability to perform at the workplace in daily life. The well-established relation between psychological stress and its pathogeneses highlights the need for detecting psychological stress early, in order to prevent disease advancement and to save human lives. Electroencephalography (EEG) signal recording tools are widely used to collect these psychological signals/brain rhythms in the form of electric waves. The aim of the current research was to apply automatic feature extraction to decomposed multichannel EEG recordings, in order to efficiently detect psychological stress. The traditional deep learning techniques, namely the convolution neural network (CNN), long short-term memory (LSTM), bidirectional long short-term memory (BiLSTM), gated recurrent unit (GRU) and recurrent neural network (RNN) models, have been frequently used for stress detection. A hybrid combination of these techniques may provide improved performance, and can handle long-term dependencies in non-linear brain signals. Therefore, this study proposed an integration of deep learning models, called DWT-based CNN, BiLSTM, and two layers of a GRU network, to extract features and classify stress levels. Discrete wavelet transform (DWT) analysis was used to remove the non-linearity and non-stationarity from multi-channel (14 channel) EEG recordings, and to decompose them into different frequency bands. The decomposed signals were utilized for automatic feature extraction using the CNN, and the stress levels were classified using BiLSTM and two layers of GRU. This study compared five combinations of the CNN, LSTM, BiLSTM, GRU and RNN models with the proposed model. The proposed hybrid model performed better in classification accuracy compared to the other models. Therefore, hybrid combinations are appropriate for the clinical intervention and prevention of mental and physical problems.
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Affiliation(s)
- Bishwajit Roy
- Department of Computer Science Engineering-AI & ML, Siliguri Institute of Technology, Siliguri 734009, India
| | - Lokesh Malviya
- School of Computing Science and Engineering, Vellore Institute of Technology Bhopal University, Bhopal 466114, India
| | - Radhikesh Kumar
- Department of Computer Science and Engineering, National Institute of Technology, Patna 800001, India
| | - Sandip Mal
- School of Computing Science and Engineering, Vellore Institute of Technology Bhopal University, Bhopal 466114, India
| | - Amrendra Kumar
- Department of Civil Engineering, Roorkee Institute of Technology, Roorkee 247667, India
| | - Tanmay Bhowmik
- Department of Computer Science and Engineering, Pandit Deendayal Energy University, Gandhinagar 382426, India
| | - Jong Wan Hu
- Department of Civil and Environmental Engineering, Incheon National University, Incheon 22022, Republic of Korea
- Incheon Disaster Prevention Research Center, Incheon National University, Incheon 22022, Republic of Korea
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Catrambone V, Valenza G. Complex Brain-Heart Mapping in Mental and Physical Stress. IEEE JOURNAL OF TRANSLATIONAL ENGINEERING IN HEALTH AND MEDICINE 2023; 11:495-504. [PMID: 37817820 PMCID: PMC10561752 DOI: 10.1109/jtehm.2023.3280974] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 04/29/2023] [Accepted: 05/25/2023] [Indexed: 10/12/2023]
Abstract
OBJECTIVE The central and autonomic nervous systems are deemed complex dynamic systems, wherein each system as a whole shows features that the individual system sub-components do not. They also continuously interact to maintain body homeostasis and appropriate react to endogenous and exogenous stimuli. Such interactions are comprehensively referred to functional brain-heart interplay (BHI). Nevertheless, it remains uncertain whether this interaction also exhibits complex characteristics, that is, whether the dynamics of the entire nervous system inherently demonstrate complex behavior, or if such complexity is solely a trait of the central and autonomic systems. Here, we performed complexity mapping of the BHI dynamics under mental and physical stress conditions. METHODS AND PROCEDURES Electroencephalographic and heart rate variability series were obtained from 56 healthy individuals performing mental arithmetic or cold-pressure tasks, and physiological series were properly combined to derive directional BHI series, whose complexity was quantified through fuzzy entropy. RESULTS The experimental results showed that BHI complexity is mainly modulated in the efferent functional direction from the brain to the heart, and mainly targets vagal oscillations during mental stress and sympathovagal oscillations during physical stress. CONCLUSION We conclude that the complexity of BHI mapping may provide insightful information on the dynamics of both central and autonomic activity, as well as on their continuous interaction. CLINICAL IMPACT This research enhances our comprehension of the reciprocal interactions between central and autonomic systems, potentially paving the way for more accurate diagnoses and targeted treatments of cardiovascular, neurological, and psychiatric disorders.
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Affiliation(s)
- Vincenzo Catrambone
- Neurocardiovascular Intelligence Laboratory, Bioengineering and Robotics Research Center E. Piaggio, and Department of Information EngineeringSchool of EngineeringUniversity of Pisa56126PisaItaly
| | - Gaetano Valenza
- Neurocardiovascular Intelligence Laboratory, Bioengineering and Robotics Research Center E. Piaggio, and Department of Information EngineeringSchool of EngineeringUniversity of Pisa56126PisaItaly
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Mentis AFA, Lee D, Roussos P. Applications of artificial intelligence-machine learning for detection of stress: a critical overview. Mol Psychiatry 2023:10.1038/s41380-023-02047-6. [PMID: 37020048 DOI: 10.1038/s41380-023-02047-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Revised: 03/17/2023] [Accepted: 03/20/2023] [Indexed: 04/07/2023]
Abstract
Psychological distress is a major contributor to human physiology and pathophysiology, and it has been linked to several conditions, such as auto-immune diseases, metabolic syndrome, sleep disorders, and suicidal thoughts and inclination. Therefore, early detection and management of chronic stress is crucial for the prevention of several diseases. Artificial intelligence (AI) and Machine Learning (ML) have promoted a paradigm shift in several areas of biomedicine including diagnosis, monitoring, and prognosis of disease. Here, our review aims to present some of the AI and ML applications for solving biomedical issues related to psychological stress. We provide several lines of evidence from previous studies highlighting that AI and ML have been able to predict stress and detect the brain normal states vs. abnormal states (notably, in post-traumatic stress disorder (PTSD)) with accuracy around 90%. Of note, AI/ML-driven technology applied to identify ubiquitously present stress exposure may not reach its full potential, unless future analytics focus on detecting prolonged distress through such technology instead of merely assessing stress exposure. Moving forward, we propose that a new subcategory of AI methods called Swarm Intelligence (SI) can be used towards detecting stress and PTSD. SI involves ensemble learning techniques to efficiently solve a complex problem, such as stress detection, and it offers particular strength in clinical settings, such as privacy preservation. We posit that AI and ML approaches will be beneficial for the medical and patient community when applied to predict and assess stress levels. Last, we encourage additional research to bring AI and ML into the standard clinical practice for diagnostics in the not-too-distant future.
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Affiliation(s)
- Alexios-Fotios A Mentis
- University Research Institute of Maternal and Child Health & Precision Medicine, Athens, Greece.
- UNESCO Chair on Adolescent Health Care, National and Kapodistrian University of Athens, "Aghia Sophia" Children's Hospital, Athens, Greece.
| | - Donghoon Lee
- Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
- Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
- Department of Genetics and Genomic Science and Institute for Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
| | - Panos Roussos
- Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
- Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
- Department of Genetics and Genomic Science and Institute for Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
- Mental Illness Research, Education, and Clinical Center (VISN 2 South), James J. Peters VA Medical Center, Bronx, NY, USA
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Hashem HA, Abdulazeem Y, Labib LM, Elhosseini MA, Shehata M. An Integrated Machine Learning-Based Brain Computer Interface to Classify Diverse Limb Motor Tasks: Explainable Model. SENSORS (BASEL, SWITZERLAND) 2023; 23:3171. [PMID: 36991884 PMCID: PMC10053613 DOI: 10.3390/s23063171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Revised: 02/27/2023] [Accepted: 03/13/2023] [Indexed: 06/19/2023]
Abstract
Terminal neurological conditions can affect millions of people worldwide and hinder them from doing their daily tasks and movements normally. Brain computer interface (BCI) is the best hope for many individuals with motor deficiencies. It will help many patients interact with the outside world and handle their daily tasks without assistance. Therefore, machine learning-based BCI systems have emerged as non-invasive techniques for reading out signals from the brain and interpreting them into commands to help those people to perform diverse limb motor tasks. This paper proposes an innovative and improved machine learning-based BCI system that analyzes EEG signals obtained from motor imagery to distinguish among various limb motor tasks based on BCI competition III dataset IVa. The proposed framework pipeline for EEG signal processing performs the following major steps. The first step uses a meta-heuristic optimization technique, called the whale optimization algorithm (WOA), to select the optimal features for discriminating between neural activity patterns. The pipeline then uses machine learning models such as LDA, k-NN, DT, RF, and LR to analyze the chosen features to enhance the precision of EEG signal analysis. The proposed BCI system, which merges the WOA as a feature selection method and the optimized k-NN classification model, demonstrated an overall accuracy of 98.6%, outperforming other machine learning models and previous techniques on the BCI competition III dataset IVa. Additionally, the EEG feature contribution in the ML classification model is reported using Explainable AI (XAI) tools, which provide insights into the individual contributions of the features in the predictions made by the model. By incorporating XAI techniques, the results of this study offer greater transparency and understanding of the relationship between the EEG features and the model's predictions. The proposed method shows potential levels for better use in controlling diverse limb motor tasks to help people with limb impairments and support them while enhancing their quality of life.
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Affiliation(s)
- Hend A. Hashem
- Computers and Systems Engineering Department, Faculty of Engineering, Mansoura University, Mansoura 35516, Egypt
- Nile Higher Institute of Engineering and Technology, Mansoura University, Mansoura 35516, Egypt
| | - Yousry Abdulazeem
- Computer Engineering Department, MISR Higher Institute for Engineering and Technology, Mansoura University, Mansoura 35516, Egypt
| | - Labib M. Labib
- Computers and Systems Engineering Department, Faculty of Engineering, Mansoura University, Mansoura 35516, Egypt
| | - Mostafa A. Elhosseini
- Computers and Systems Engineering Department, Faculty of Engineering, Mansoura University, Mansoura 35516, Egypt
- College of Computer Science and Engineering, Taibah University, Yanbu 46421, Saudi Arabia
| | - Mohamed Shehata
- Computers and Systems Engineering Department, Faculty of Engineering, Mansoura University, Mansoura 35516, Egypt
- Computer Science and Engineering Department, Speed School of Engineering, University of Louisville, Louisville, KY 40292, USA
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Auto-MyIn: Automatic diagnosis of myocardial infarction via multiple GLCMs, CNNs, and SVMs. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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GabROP: Gabor Wavelets-Based CAD for Retinopathy of Prematurity Diagnosis via Convolutional Neural Networks. Diagnostics (Basel) 2023; 13:diagnostics13020171. [PMID: 36672981 PMCID: PMC9857608 DOI: 10.3390/diagnostics13020171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 12/12/2022] [Accepted: 12/19/2022] [Indexed: 01/05/2023] Open
Abstract
One of the most serious and dangerous ocular problems in premature infants is retinopathy of prematurity (ROP), a proliferative vascular disease. Ophthalmologists can use automatic computer-assisted diagnostic (CAD) tools to help them make a safe, accurate, and low-cost diagnosis of ROP. All previous CAD tools for ROP diagnosis use the original fundus images. Unfortunately, learning the discriminative representation from ROP-related fundus images is difficult. Textural analysis techniques, such as Gabor wavelets (GW), can demonstrate significant texture information that can help artificial intelligence (AI) based models to improve diagnostic accuracy. In this paper, an effective and automated CAD tool, namely GabROP, based on GW and multiple deep learning (DL) models is proposed. Initially, GabROP analyzes fundus images using GW and generates several sets of GW images. Next, these sets of images are used to train three convolutional neural networks (CNNs) models independently. Additionally, the actual fundus pictures are used to build these networks. Using the discrete wavelet transform (DWT), texture features retrieved from every CNN trained with various sets of GW images are combined to create a textural-spectral-temporal demonstration. Afterward, for each CNN, these features are concatenated with spatial deep features obtained from the original fundus images. Finally, the previous concatenated features of all three CNN are incorporated using the discrete cosine transform (DCT) to lessen the size of features caused by the fusion process. The outcomes of GabROP show that it is accurate and efficient for ophthalmologists. Additionally, the effectiveness of GabROP is compared to recently developed ROP diagnostic techniques. Due to GabROP's superior performance compared to competing tools, ophthalmologists may be able to identify ROP more reliably and precisely, which could result in a reduction in diagnostic effort and examination time.
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Attallah O. MonDiaL-CAD: Monkeypox diagnosis via selected hybrid CNNs unified with feature selection and ensemble learning. Digit Health 2023; 9:20552076231180054. [PMID: 37312961 PMCID: PMC10259124 DOI: 10.1177/20552076231180054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Accepted: 05/18/2023] [Indexed: 06/15/2023] Open
Abstract
Objective Recently, monkeypox virus is slowly evolving and there are fears it will spread as COVID-19. Computer-aided diagnosis (CAD) based on deep learning approaches especially convolutional neural network (CNN) can assist in the rapid determination of reported incidents. The current CADs were mostly based on an individual CNN. Few CADs employed multiple CNNs but did not investigate which combination of CNNs has a greater impact on the performance. Furthermore, they relied on only spatial information of deep features to train their models. This study aims to construct a CAD tool named "Monkey-CAD" that can address the previous limitations and automatically diagnose monkeypox rapidly and accurately. Methods Monkey-CAD extracts features from eight CNNs and then examines the best possible combination of deep features that influence classification. It employs discrete wavelet transform (DWT) to merge features which diminishes fused features' size and provides a time-frequency demonstration. These deep features' sizes are then further reduced via an entropy-based feature selection approach. These reduced fused features are finally used to deliver a better representation of the input features and feed three ensemble classifiers. Results Two freely accessible datasets called Monkeypox skin image (MSID) and Monkeypox skin lesion (MSLD) are employed in this study. Monkey-CAD could discriminate among cases with and without Monkeypox achieving an accuracy of 97.1% for MSID and 98.7% for MSLD datasets respectively. Conclusions Such promising results demonstrate that the Monkey-CAD can be employed to assist health practitioners. They also verify that fusing deep features from selected CNNs can boost performance.
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Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communications Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria, Egypt
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Attallah O, Aslan MF, Sabanci K. A Framework for Lung and Colon Cancer Diagnosis via Lightweight Deep Learning Models and Transformation Methods. Diagnostics (Basel) 2022; 12:diagnostics12122926. [PMID: 36552933 PMCID: PMC9776637 DOI: 10.3390/diagnostics12122926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2022] [Revised: 11/19/2022] [Accepted: 11/22/2022] [Indexed: 11/25/2022] Open
Abstract
Among the leading causes of mortality and morbidity in people are lung and colon cancers. They may develop concurrently in organs and negatively impact human life. If cancer is not diagnosed in its early stages, there is a great likelihood that it will spread to the two organs. The histopathological detection of such malignancies is one of the most crucial components of effective treatment. Although the process is lengthy and complex, deep learning (DL) techniques have made it feasible to complete it more quickly and accurately, enabling researchers to study a lot more patients in a short time period and for a lot less cost. Earlier studies relied on DL models that require great computational ability and resources. Most of them depended on individual DL models to extract features of high dimension or to perform diagnoses. However, in this study, a framework based on multiple lightweight DL models is proposed for the early detection of lung and colon cancers. The framework utilizes several transformation methods that perform feature reduction and provide a better representation of the data. In this context, histopathology scans are fed into the ShuffleNet, MobileNet, and SqueezeNet models. The number of deep features acquired from these models is subsequently reduced using principal component analysis (PCA) and fast Walsh-Hadamard transform (FHWT) techniques. Following that, discrete wavelet transform (DWT) is used to fuse the FWHT's reduced features obtained from the three DL models. Additionally, the three DL models' PCA features are concatenated. Finally, the diminished features as a result of PCA and FHWT-DWT reduction and fusion processes are fed to four distinct machine learning algorithms, reaching the highest accuracy of 99.6%. The results obtained using the proposed framework based on lightweight DL models show that it can distinguish lung and colon cancer variants with a lower number of features and less computational complexity compared to existing methods. They also prove that utilizing transformation methods to reduce features can offer a superior interpretation of the data, thus improving the diagnosis procedure.
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Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communications Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria 1029, Egypt
- Correspondence:
| | - Muhammet Fatih Aslan
- Department of Electrical and Electronics Engineering, Karamanoglu Mehmetbey University, 70100 Karaman, Turkey
| | - Kadir Sabanci
- Department of Electrical and Electronics Engineering, Karamanoglu Mehmetbey University, 70100 Karaman, Turkey
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14
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Inagaki K, Ohta Y. Capacity of Autonomous Sensory Meridian Response on the Reduction of Mental Stress. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:14577. [PMID: 36361455 PMCID: PMC9658167 DOI: 10.3390/ijerph192114577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 11/02/2022] [Accepted: 11/02/2022] [Indexed: 06/16/2023]
Abstract
In a social environment, various types of stress can be overwhelming. Humans frequently encounter these stressful situations in social life. Stress is divided into physical stress and mental stress; the latter is induced by heavy mental workloads and has become a huge social problem, leading to mental disorders and possibly suicide in the worst scenario. Investigations into monitoring mental stress and reducing stressful conditions are, therefore, important for its prevention. In the present study, we focused on autonomous sensory meridian response (ASMR) sound, which is known to improve the human mental condition through its comforting and relaxing effects. We investigated the effect of ASMR on the mental workload induced by mental tasks by the evaluation of EEG activation patterns in normal subjects. Our results showed a significant decrease in alpha-band activity and a significant increase in gamma (high beta)-band activity under the induction of mental workload by mental tasks compared to the resting condition. When applying ASMR sound, alpha- and gamma-band activity under the induction of mental workload by mental tasks was restored to the level of the resting condition. In conclusion, these results indicate that ASMR sound reduces the mental stress induced by mental workload.
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15
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Rejer I, Wacewicz D, Schab M, Romanowski B, Łukasiewicz K, Maciaszczyk M. Stressors Length and the Habituation Effect-An EEG Study. SENSORS (BASEL, SWITZERLAND) 2022; 22:6862. [PMID: 36146211 PMCID: PMC9505843 DOI: 10.3390/s22186862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 09/02/2022] [Accepted: 09/07/2022] [Indexed: 06/16/2023]
Abstract
The research described in this paper aimed to determine whether people respond differently to short and long stimuli and whether stress stimuli repeated over time evoke a habituation effect. To meet this goal, we performed a cognitive experiment with eight subjects. During this experiment, the subjects were presented with two trays of stress-inducing stimuli (different in length) interlaced with the main tasks. The mean beta power calculated from the EEG signal recorded from the two prefrontal electrodes (Fp1 and Fp2) was used as a stress index. The main results are as follows: (i) we confirmed the previous finding that beta power assessed from the EEG signal recorded from prefrontal electrodes is significantly higher for the STRESS condition compared to NON-STRESS condition; (ii) we found a significant difference in beta power between STRESS conditions that differed in length-the beta power was four times higher for short, compared to long, stress-inducing stimuli; (iii) we did not find enough evidence to confirm (or reject) the hypothesis that stress stimuli repeated over time evoke the habituation effect; although the general trends aggregated over subjects and stressors were negative, their slopes were not statistically significant; moreover, there was no agreement among subjects with respect to the slope of individual trends.
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16
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Genetic Algorithm-Based Human Mental Stress Detection and Alerting in Internet of Things. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:4086213. [PMID: 36093489 PMCID: PMC9451989 DOI: 10.1155/2022/4086213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Accepted: 08/01/2022] [Indexed: 11/17/2022]
Abstract
Healthcare is one of the emerging application fields in the Internet of Things (IoT). Stress is a heightened psycho-physiological condition of the human that occurs in response to major objects or events. Stress factors are environmental elements that lead to stress. A person's emotional well-being can be negatively impacted by long-term exposure to several stresses affecting at the same time, which can cause chronic health issues. To avoid strain problems, it is vital to recognize them in their early stages, which can only be done through regular stress monitoring. Wearable gadgets offer constant and real information collecting, which aids in experiencing an increase. An investigation of stress discovery using detecting devices and deep learning-based is implemented in this work. This proposed work investigates stress detection techniques that are utilized with detecting hardware, for example, electroencephalography (EEG), photoplethysmography (PPG), and the Galvanic skin reaction (GSR) as well as in various conditions including traveling and learning. A genetic algorithm is utilized to separate the features, and the ECNN-LSTM is utilized to classify the given information by utilizing the DEAP dataset. Before that, preprocessing strategies are proposed for eliminating artifacts in the signal. Then, the stress that is beyond the threshold value is reached the emergency/alert state; in that case, an expert who predicts the mental stress sends the report to the patient/doctor through the Internet. Finally, the performance is evaluated and compared with the traditional approaches in terms of accuracy, f1-score, precision, and recall.
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17
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Sciaraffa N, Di Flumeri G, Germano D, Giorgi A, Di Florio A, Borghini G, Vozzi A, Ronca V, Babiloni F, Aricò P. Evaluation of a New Lightweight EEG Technology for Translational Applications of Passive Brain-Computer Interfaces. Front Hum Neurosci 2022; 16:901387. [PMID: 35911603 PMCID: PMC9331459 DOI: 10.3389/fnhum.2022.901387] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Accepted: 06/21/2022] [Indexed: 11/18/2022] Open
Abstract
Technologies like passive brain-computer interfaces (BCI) can enhance human-machine interaction. Anyhow, there are still shortcomings in terms of easiness of use, reliability, and generalizability that prevent passive-BCI from entering real-life situations. The current work aimed to technologically and methodologically design a new gel-free passive-BCI system for out-of-the-lab employment. The choice of the water-based electrodes and the design of a new lightweight headset met the need for easy-to-wear, comfortable, and highly acceptable technology. The proposed system showed high reliability in both laboratory and realistic settings, performing not significantly different from the gold standard based on gel electrodes. In both cases, the proposed system allowed effective discrimination (AUC > 0.9) between low and high levels of workload, vigilance, and stress even for high temporal resolution (<10 s). Finally, the generalizability of the proposed system has been tested through a cross-task calibration. The system calibrated with the data recorded during the laboratory tasks was able to discriminate the targeted human factors during the realistic task reaching AUC values higher than 0.8 at 40 s of temporal resolution in case of vigilance and workload, and 20 s of temporal resolution for the stress monitoring. These results pave the way for ecologic use of the system, where calibration data of the realistic task are difficult to obtain.
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Affiliation(s)
| | - Gianluca Di Flumeri
- BrainSigns Srl, Rome, Italy
- Department of Molecular Medicine, Sapienza University of Rome, Rome, Italy
| | | | - Andrea Giorgi
- BrainSigns Srl, Rome, Italy
- Department of Molecular Medicine, Sapienza University of Rome, Rome, Italy
| | | | - Gianluca Borghini
- BrainSigns Srl, Rome, Italy
- Department of Molecular Medicine, Sapienza University of Rome, Rome, Italy
| | - Alessia Vozzi
- BrainSigns Srl, Rome, Italy
- Department of Molecular Medicine, Sapienza University of Rome, Rome, Italy
| | - Vincenzo Ronca
- BrainSigns Srl, Rome, Italy
- Department of Molecular Medicine, Sapienza University of Rome, Rome, Italy
| | - Fabio Babiloni
- BrainSigns Srl, Rome, Italy
- Department of Molecular Medicine, Sapienza University of Rome, Rome, Italy
- College of Computer Science and Technology, Hangzhou Dianzi University, Hangzhou, China
| | - Pietro Aricò
- BrainSigns Srl, Rome, Italy
- Department of Molecular Medicine, Sapienza University of Rome, Rome, Italy
- Department of Computer, Control, and Management Engineering “Antonio Ruberti”, Sapienza University of Rome, Rome, Italy
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18
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Attallah O, Samir A. A wavelet-based deep learning pipeline for efficient COVID-19 diagnosis via CT slices. Appl Soft Comput 2022; 128:109401. [PMID: 35919069 PMCID: PMC9335861 DOI: 10.1016/j.asoc.2022.109401] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 05/20/2022] [Accepted: 07/25/2022] [Indexed: 12/30/2022]
Abstract
The quick diagnosis of the novel coronavirus (COVID-19) disease is vital to prevent its propagation and improve therapeutic outcomes. Computed tomography (CT) is believed to be an effective tool for diagnosing COVID-19, however, the CT scan contains hundreds of slices that are complex to be analyzed and could cause delays in diagnosis. Artificial intelligence (AI) especially deep learning (DL), could facilitate and speed up COVID-19 diagnosis from such scans. Several studies employed DL approaches based on 2D CT images from a single view, nevertheless, 3D multiview CT slices demonstrated an excellent ability to enhance the efficiency of COVID-19 diagnosis. The majority of DL-based studies utilized the spatial information of the original CT images to train their models, though, using spectral–temporal information could improve the detection of COVID-19. This article proposes a DL-based pipeline called CoviWavNet for the automatic diagnosis of COVID-19. CoviWavNet uses a 3D multiview dataset called OMNIAHCOV. Initially, it analyzes the CT slices using multilevel discrete wavelet decomposition (DWT) and then uses the heatmaps of the approximation levels to train three ResNet CNN models. These ResNets use the spectral–temporal information of such images to perform classification. Subsequently, it investigates whether the combination of spatial information with spectral–temporal information could improve the diagnostic accuracy of COVID-19. For this purpose, it extracts deep spectral–temporal features from such ResNets using transfer learning and integrates them with deep spatial features extracted from the same ResNets trained with the original CT slices. Then, it utilizes a feature selection step to reduce the dimension of such integrated features and use them as inputs to three support vector machine (SVM) classifiers. To further validate the performance of CoviWavNet, a publicly available benchmark dataset called SARS-COV-2-CT-Scan is employed. The results of CoviWavNet have demonstrated that using the spectral–temporal information of the DWT heatmap images to train the ResNets is superior to utilizing the spatial information of the original CT images. Furthermore, integrating deep spectral–temporal features with deep spatial features has enhanced the classification accuracy of the three SVM classifiers reaching a final accuracy of 99.33% and 99.7% for the OMNIAHCOV and SARS-COV-2-CT-Scan datasets respectively. These accuracies verify the outstanding performance of CoviWavNet compared to other related studies. Thus, CoviWavNet can help radiologists in the rapid and accurate diagnosis of COVID-19 diagnosis.
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Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communications Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria 1029, Egypt
| | - Ahmed Samir
- Department of Radiodiagnosis, Faculty of Medicine, University of Alexandria, Egypt
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19
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Attallah O. An Intelligent ECG-Based Tool for Diagnosing COVID-19 via Ensemble Deep Learning Techniques. BIOSENSORS 2022; 12:bios12050299. [PMID: 35624600 PMCID: PMC9138764 DOI: 10.3390/bios12050299] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Revised: 04/06/2022] [Accepted: 04/24/2022] [Indexed: 06/01/2023]
Abstract
Diagnosing COVID-19 accurately and rapidly is vital to control its quick spread, lessen lockdown restrictions, and decrease the workload on healthcare structures. The present tools to detect COVID-19 experience numerous shortcomings. Therefore, novel diagnostic tools are to be examined to enhance diagnostic accuracy and avoid the limitations of these tools. Earlier studies indicated multiple structures of cardiovascular alterations in COVID-19 cases which motivated the realization of using ECG data as a tool for diagnosing the novel coronavirus. This study introduced a novel automated diagnostic tool based on ECG data to diagnose COVID-19. The introduced tool utilizes ten deep learning (DL) models of various architectures. It obtains significant features from the last fully connected layer of each DL model and then combines them. Afterward, the tool presents a hybrid feature selection based on the chi-square test and sequential search to select significant features. Finally, it employs several machine learning classifiers to perform two classification levels. A binary level to differentiate between normal and COVID-19 cases, and a multiclass to discriminate COVID-19 cases from normal and other cardiac complications. The proposed tool reached an accuracy of 98.2% and 91.6% for binary and multiclass levels, respectively. This performance indicates that the ECG could be used as an alternative means of diagnosis of COVID-19.
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Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communications Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria 1029, Egypt
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20
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Sciaraffa N, Di Flumeri G, Germano D, Giorgi A, Di Florio A, Borghini G, Vozzi A, Ronca V, Varga R, van Gasteren M, Babiloni F, Aricò P. Validation of a Light EEG-Based Measure for Real-Time Stress Monitoring during Realistic Driving. Brain Sci 2022; 12:brainsci12030304. [PMID: 35326261 PMCID: PMC8946850 DOI: 10.3390/brainsci12030304] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 02/11/2022] [Accepted: 02/22/2022] [Indexed: 01/27/2023] Open
Abstract
Driver’s stress affects decision-making and the probability of risk occurrence, and it is therefore a key factor in road safety. This suggests the need for continuous stress monitoring. This work aims at validating a stress neurophysiological measure—a Neurometric—for out-of-the-lab use obtained from lightweight EEG relying on two wet sensors, in real-time, and without calibration. The Neurometric was tested during a multitasking experiment and validated with a realistic driving simulator. Twenty subjects participated in the experiment, and the resulting stress Neurometric was compared with the Random Forest (RF) model, calibrated by using EEG features and both intra-subject and cross-task approaches. The Neurometric was also compared with a measure based on skin conductance level (SCL), representing one of the physiological parameters investigated in the literature mostly correlated with stress variations. We found that during both multitasking and realistic driving experiments, the Neurometric was able to discriminate between low and high levels of stress with an average Area Under Curve (AUC) value higher than 0.9. Furthermore, the stress Neurometric showed higher AUC and stability than both the SCL measure and the RF calibrated with a cross-task approach. In conclusion, the Neurometric proposed in this work proved to be suitable for out-of-the-lab monitoring of stress levels.
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Affiliation(s)
- Nicolina Sciaraffa
- BrainSigns Srl, Lungotevere Michelangelo 9, 00192 Rome, Italy; (G.D.F.); (D.G.); (A.G.); (A.D.F.); (G.B.); (A.V.); (V.R.); (F.B.); (P.A.)
- Correspondence:
| | - Gianluca Di Flumeri
- BrainSigns Srl, Lungotevere Michelangelo 9, 00192 Rome, Italy; (G.D.F.); (D.G.); (A.G.); (A.D.F.); (G.B.); (A.V.); (V.R.); (F.B.); (P.A.)
- Department of Molecular Medicine, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy
| | - Daniele Germano
- BrainSigns Srl, Lungotevere Michelangelo 9, 00192 Rome, Italy; (G.D.F.); (D.G.); (A.G.); (A.D.F.); (G.B.); (A.V.); (V.R.); (F.B.); (P.A.)
| | - Andrea Giorgi
- BrainSigns Srl, Lungotevere Michelangelo 9, 00192 Rome, Italy; (G.D.F.); (D.G.); (A.G.); (A.D.F.); (G.B.); (A.V.); (V.R.); (F.B.); (P.A.)
- Department of Molecular Medicine, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy
| | - Antonio Di Florio
- BrainSigns Srl, Lungotevere Michelangelo 9, 00192 Rome, Italy; (G.D.F.); (D.G.); (A.G.); (A.D.F.); (G.B.); (A.V.); (V.R.); (F.B.); (P.A.)
| | - Gianluca Borghini
- BrainSigns Srl, Lungotevere Michelangelo 9, 00192 Rome, Italy; (G.D.F.); (D.G.); (A.G.); (A.D.F.); (G.B.); (A.V.); (V.R.); (F.B.); (P.A.)
- Department of Molecular Medicine, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy
| | - Alessia Vozzi
- BrainSigns Srl, Lungotevere Michelangelo 9, 00192 Rome, Italy; (G.D.F.); (D.G.); (A.G.); (A.D.F.); (G.B.); (A.V.); (V.R.); (F.B.); (P.A.)
- Department of Molecular Medicine, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy
| | - Vincenzo Ronca
- BrainSigns Srl, Lungotevere Michelangelo 9, 00192 Rome, Italy; (G.D.F.); (D.G.); (A.G.); (A.D.F.); (G.B.); (A.V.); (V.R.); (F.B.); (P.A.)
- Department of Molecular Medicine, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy
| | - Rodrigo Varga
- ITCL Technology Centre, C. López Bravo, 70, 09001 Burgos, Spain; (R.V.); (M.v.G.)
| | - Marteyn van Gasteren
- ITCL Technology Centre, C. López Bravo, 70, 09001 Burgos, Spain; (R.V.); (M.v.G.)
| | - Fabio Babiloni
- BrainSigns Srl, Lungotevere Michelangelo 9, 00192 Rome, Italy; (G.D.F.); (D.G.); (A.G.); (A.D.F.); (G.B.); (A.V.); (V.R.); (F.B.); (P.A.)
- Department of Molecular Medicine, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy
- College of Computer Science and Technology, Hangzhou Dianzi University, Hangzhou 310005, China
| | - Pietro Aricò
- BrainSigns Srl, Lungotevere Michelangelo 9, 00192 Rome, Italy; (G.D.F.); (D.G.); (A.G.); (A.D.F.); (G.B.); (A.V.); (V.R.); (F.B.); (P.A.)
- Department of Molecular Medicine, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy
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21
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Attallah O. A computer-aided diagnostic framework for coronavirus diagnosis using texture-based radiomics images. Digit Health 2022; 8:20552076221092543. [PMID: 35433024 PMCID: PMC9005822 DOI: 10.1177/20552076221092543] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2022] [Accepted: 03/21/2022] [Indexed: 12/14/2022] Open
Abstract
The accurate and rapid detection of the novel coronavirus infection, coronavirus is very important to prevent the fast spread of such disease. Thus, reducing negative effects that influenced many industrial sectors, especially healthcare. Artificial intelligence techniques in particular deep learning could help in the fast and precise diagnosis of coronavirus from computed tomography images. Most artificial intelligence-based studies used the original computed tomography images to build their models; however, the integration of texture-based radiomics images and deep learning techniques could improve the diagnostic accuracy of the novel coronavirus diseases. This study proposes a computer-assisted diagnostic framework based on multiple deep learning and texture-based radiomics approaches. It first trains three Residual Networks (ResNets) deep learning techniques with two texture-based radiomics images including discrete wavelet transform and gray-level covariance matrix instead of the original computed tomography images. Then, it fuses the texture-based radiomics deep features sets extracted from each using discrete cosine transform. Thereafter, it further combines the fused texture-based radiomics deep features obtained from the three convolutional neural networks. Finally, three support vector machine classifiers are utilized for the classification procedure. The proposed method is validated experimentally on the benchmark severe respiratory syndrome coronavirus 2 computed tomography image dataset. The accuracies attained indicate that using texture-based radiomics (gray-level covariance matrix, discrete wavelet transform) images for training the ResNet-18 (83.22%, 74.9%), ResNet-50 (80.94%, 78.39%), and ResNet-101 (80.54%, 77.99%) is better than using the original computed tomography images (70.34%, 76.51%, and 73.42%) for ResNet-18, ResNet-50, and ResNet-101, respectively. Furthermore, the sensitivity, specificity, accuracy, precision, and F1-score achieved using the proposed computer-assisted diagnostic after the two fusion steps are 99.47%, 99.72%, 99.60%, 99.72%, and 99.60% which proves that combining texture-based radiomics deep features obtained from the three ResNets has boosted its performance. Thus, fusing multiple texture-based radiomics deep features mined from several convolutional neural networks is better than using only one type of radiomics approach and a single convolutional neural network. The performance of the proposed computer-assisted diagnostic framework allows it to be used by radiologists in attaining fast and accurate diagnosis.
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Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communications Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria, Egypt
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22
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Attallah O. A deep learning-based diagnostic tool for identifying various diseases via facial images. Digit Health 2022; 8:20552076221124432. [PMID: 36105626 PMCID: PMC9465585 DOI: 10.1177/20552076221124432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Accepted: 08/18/2022] [Indexed: 11/16/2022] Open
Abstract
With the current health crisis caused by the COVID-19 pandemic, patients have
become more anxious about infection, so they prefer not to have direct contact
with doctors or clinicians. Lately, medical scientists have confirmed that
several diseases exhibit corresponding specific features on the face the face.
Recent studies have indicated that computer-aided facial diagnosis can be a
promising tool for the automatic diagnosis and screening of diseases from facial
images. However, few of these studies used deep learning (DL) techniques. Most
of them focused on detecting a single disease, using handcrafted feature
extraction methods and conventional machine learning techniques based on
individual classifiers trained on small and private datasets using images taken
from a controlled environment. This study proposes a novel computer-aided facial
diagnosis system called FaceDisNet that uses a new public dataset based on
images taken from an unconstrained environment and could be employed for
forthcoming comparisons. It detects single and multiple diseases. FaceDisNet is
constructed by integrating several spatial deep features from convolutional
neural networks of various architectures. It does not depend only on spatial
features but also extracts spatial-spectral features. FaceDisNet searches for
the fused spatial-spectral feature set that has the greatest impact on the
classification. It employs two feature selection techniques to reduce the large
dimension of features resulting from feature fusion. Finally, it builds an
ensemble classifier based on stacking to perform classification. The performance
of FaceDisNet verifies its ability to diagnose single and multiple diseases.
FaceDisNet achieved a maximum accuracy of 98.57% and 98% after the ensemble
classification and feature selection steps for binary and multiclass
classification categories. These results prove that FaceDisNet is a reliable
tool and could be employed to avoid the difficulties and complications of manual
diagnosis. Also, it can help physicians achieve accurate diagnoses without the
need for physical contact with the patients.
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Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communications Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria, Egypt
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23
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Attallah O. DIAROP: Automated Deep Learning-Based Diagnostic Tool for Retinopathy of Prematurity. Diagnostics (Basel) 2021; 11:2034. [PMID: 34829380 PMCID: PMC8620568 DOI: 10.3390/diagnostics11112034] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Revised: 09/24/2021] [Accepted: 11/01/2021] [Indexed: 12/12/2022] Open
Abstract
Retinopathy of Prematurity (ROP) affects preterm neonates and could cause blindness. Deep Learning (DL) can assist ophthalmologists in the diagnosis of ROP. This paper proposes an automated and reliable diagnostic tool based on DL techniques called DIAROP to support the ophthalmologic diagnosis of ROP. It extracts significant features by first obtaining spatial features from the four Convolution Neural Networks (CNNs) DL techniques using transfer learning and then applying Fast Walsh Hadamard Transform (FWHT) to integrate these features. Moreover, DIAROP explores the best-integrated features extracted from the CNNs that influence its diagnostic capability. The results of DIAROP indicate that DIAROP achieved an accuracy of 93.2% and an area under receiving operating characteristic curve (AUC) of 0.98. Furthermore, DIAROP performance is compared with recent ROP diagnostic tools. Its promising performance shows that DIAROP may assist the ophthalmologic diagnosis of ROP.
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Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communications Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria 1029, Egypt
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24
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Intelligent Dermatologist Tool for Classifying Multiple Skin Cancer Subtypes by Incorporating Manifold Radiomics Features Categories. CONTRAST MEDIA & MOLECULAR IMAGING 2021; 2021:7192016. [PMID: 34621146 PMCID: PMC8457955 DOI: 10.1155/2021/7192016] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 08/20/2021] [Accepted: 09/01/2021] [Indexed: 02/06/2023]
Abstract
The rates of skin cancer (SC) are rising every year and becoming a critical health issue worldwide. SC's early and accurate diagnosis is the key procedure to reduce these rates and improve survivability. However, the manual diagnosis is exhausting, complicated, expensive, prone to diagnostic error, and highly dependent on the dermatologist's experience and abilities. Thus, there is a vital need to create automated dermatologist tools that are capable of accurately classifying SC subclasses. Recently, artificial intelligence (AI) techniques including machine learning (ML) and deep learning (DL) have verified the success of computer-assisted dermatologist tools in the automatic diagnosis and detection of SC diseases. Previous AI-based dermatologist tools are based on features which are either high-level features based on DL methods or low-level features based on handcrafted operations. Most of them were constructed for binary classification of SC. This study proposes an intelligent dermatologist tool to accurately diagnose multiple skin lesions automatically. This tool incorporates manifold radiomics features categories involving high-level features such as ResNet-50, DenseNet-201, and DarkNet-53 and low-level features including discrete wavelet transform (DWT) and local binary pattern (LBP). The results of the proposed intelligent tool prove that merging manifold features of different categories has a high influence on the classification accuracy. Moreover, these results are superior to those obtained by other related AI-based dermatologist tools. Therefore, the proposed intelligent tool can be used by dermatologists to help them in the accurate diagnosis of the SC subcategory. It can also overcome manual diagnosis limitations, reduce the rates of infection, and enhance survival rates.
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EEG Mental Stress Assessment Using Hybrid Multi-Domain Feature Sets of Functional Connectivity Network and Time-Frequency Features. SENSORS 2021; 21:s21186300. [PMID: 34577505 PMCID: PMC8473213 DOI: 10.3390/s21186300] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 09/07/2021] [Accepted: 09/16/2021] [Indexed: 12/28/2022]
Abstract
Exposure to mental stress for long period leads to serious accidents and health problems. To avoid negative consequences on health and safety, it is very important to detect mental stress at its early stages, i.e., when it is still limited to acute or episodic stress. In this study, we developed an experimental protocol to induce two different levels of stress by utilizing a mental arithmetic task with time pressure and negative feedback as the stressors. We assessed the levels of stress on 22 healthy subjects using frontal electroencephalogram (EEG) signals, salivary alpha-amylase level (AAL), and multiple machine learning (ML) classifiers. The EEG signals were analyzed using a fusion of functional connectivity networks estimated by the Phase Locking Value (PLV) and temporal and spectral domain features. A total of 210 different features were extracted from all domains. Only the optimum multi-domain features were used for classification. We then quantified stress levels using statistical analysis and seven ML classifiers. Our result showed that the AAL level was significantly increased (p < 0.01) under stress condition in all subjects. Likewise, the functional connectivity network demonstrated a significant decrease under stress, p < 0.05. Moreover, we achieved the highest stress classification accuracy of 93.2% using the Support Vector Machine (SVM) classifier. Other classifiers produced relatively similar results.
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26
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EEG-based multi-level stress classification with and without smoothing filter. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Katmah R, Al-Shargie F, Tariq U, Babiloni F, Al-Mughairbi F, Al-Nashash H. A Review on Mental Stress Assessment Methods Using EEG Signals. SENSORS (BASEL, SWITZERLAND) 2021; 21:5043. [PMID: 34372280 PMCID: PMC8347831 DOI: 10.3390/s21155043] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Revised: 07/13/2021] [Accepted: 07/19/2021] [Indexed: 01/19/2023]
Abstract
Mental stress is one of the serious factors that lead to many health problems. Scientists and physicians have developed various tools to assess the level of mental stress in its early stages. Several neuroimaging tools have been proposed in the literature to assess mental stress in the workplace. Electroencephalogram (EEG) signal is one important candidate because it contains rich information about mental states and condition. In this paper, we review the existing EEG signal analysis methods on the assessment of mental stress. The review highlights the critical differences between the research findings and argues that variations of the data analysis methods contribute to several contradictory results. The variations in results could be due to various factors including lack of standardized protocol, the brain region of interest, stressor type, experiment duration, proper EEG processing, feature extraction mechanism, and type of classifier. Therefore, the significant part related to mental stress recognition is choosing the most appropriate features. In particular, a complex and diverse range of EEG features, including time-varying, functional, and dynamic brain connections, requires integration of various methods to understand their associations with mental stress. Accordingly, the review suggests fusing the cortical activations with the connectivity network measures and deep learning approaches to improve the accuracy of mental stress level assessment.
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Affiliation(s)
- Rateb Katmah
- Biomedical Engineering Graduate Program, American University of Sharjah, Sharjah 26666, United Arab Emirates;
| | - Fares Al-Shargie
- Department of Electrical Engineering, American University of Sharjah, Sharjah 26666, United Arab Emirates; (U.T.); (H.A.-N.)
| | - Usman Tariq
- Department of Electrical Engineering, American University of Sharjah, Sharjah 26666, United Arab Emirates; (U.T.); (H.A.-N.)
| | - Fabio Babiloni
- Department of Molecular Medicine, University of Sapienza Rome, 00185 Rome, Italy;
- College Computer Science and Technology, University Hangzhou Dianzi, Hangzhou 310018, China
| | - Fadwa Al-Mughairbi
- College of Medicines and Health Sciences, United Arab Emirates University, Al-Ain 15551, United Arab Emirates;
| | - Hasan Al-Nashash
- Department of Electrical Engineering, American University of Sharjah, Sharjah 26666, United Arab Emirates; (U.T.); (H.A.-N.)
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Perez-Valero E, Vaquero-Blasco MA, Lopez-Gordo MA, Morillas C. Quantitative Assessment of Stress Through EEG During a Virtual Reality Stress-Relax Session. Front Comput Neurosci 2021; 15:684423. [PMID: 34335216 PMCID: PMC8317646 DOI: 10.3389/fncom.2021.684423] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Accepted: 06/24/2021] [Indexed: 11/13/2022] Open
Abstract
Recent studies have addressed stress level classification via electroencephalography (EEG) and machine learning. These works typically use EEG-based features, like power spectral density (PSD), to develop stress classifiers. Nonetheless, these classifiers are usually limited to the discrimination of two (stress and no stress) or three (low, medium, and high) stress levels. In this study we propose an alternative for quantitative stress assessment based on EEG and regression algorithms. To this aim, we conducted a group of 23 participants (mean age 22.65 ± 5.48) over a stress-relax experience while monitoring their EEG. First, we stressed the participants via the Montreal imaging stress task (MIST), and then we led them through a 360-degree virtual reality (VR) relaxation experience. Throughout the session, the participants reported their self-perceived stress level (SPSL) via surveys. Subsequently, we extracted spectral features from the EEG of the participants and we developed individual models based on regression algorithms to predict their SPSL. We evaluated stress regression performance in terms of the mean squared percentage error (MSPE) and the correlation coefficient (R2). The results yielded from this evaluation (MSPE = 10.62 ± 2.12, R2 = 0.92 ± 0.02) suggest that our approach predicted the stress level of the participants with remarkable performance. These results may have a positive impact in diverse areas that could benefit from stress level quantitative prediction. These areas include research fields like neuromarketing, and training of professionals such as surgeons, industrial workers, or firefighters, that often face stressful situations.
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Affiliation(s)
- Eduardo Perez-Valero
- Department of Computer Architecture and Technology, University of Granada, Granada, Spain.,Research Centre for Information and Communications Technologies, University of Granada, Granada, Spain
| | - Miguel A Vaquero-Blasco
- Research Centre for Information and Communications Technologies, University of Granada, Granada, Spain.,Department of Signal Theory, Telematics and Communications, University of Granada, Granada, Spain
| | - Miguel A Lopez-Gordo
- Research Centre for Information and Communications Technologies, University of Granada, Granada, Spain.,Department of Signal Theory, Telematics and Communications, University of Granada, Granada, Spain
| | - Christian Morillas
- Department of Computer Architecture and Technology, University of Granada, Granada, Spain.,Research Centre for Information and Communications Technologies, University of Granada, Granada, Spain
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Attallah O. CoMB-Deep: Composite Deep Learning-Based Pipeline for Classifying Childhood Medulloblastoma and Its Classes. Front Neuroinform 2021; 15:663592. [PMID: 34122031 PMCID: PMC8193683 DOI: 10.3389/fninf.2021.663592] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Accepted: 04/26/2021] [Indexed: 12/28/2022] Open
Abstract
Childhood medulloblastoma (MB) is a threatening malignant tumor affecting children all over the globe. It is believed to be the foremost common pediatric brain tumor causing death. Early and accurate classification of childhood MB and its classes are of great importance to help doctors choose the suitable treatment and observation plan, avoid tumor progression, and lower death rates. The current gold standard for diagnosing MB is the histopathology of biopsy samples. However, manual analysis of such images is complicated, costly, time-consuming, and highly dependent on the expertise and skills of pathologists, which might cause inaccurate results. This study aims to introduce a reliable computer-assisted pipeline called CoMB-Deep to automatically classify MB and its classes with high accuracy from histopathological images. This key challenge of the study is the lack of childhood MB datasets, especially its four categories (defined by the WHO) and the inadequate related studies. All relevant works were based on either deep learning (DL) or textural analysis feature extractions. Also, such studies employed distinct features to accomplish the classification procedure. Besides, most of them only extracted spatial features. Nevertheless, CoMB-Deep blends the advantages of textural analysis feature extraction techniques and DL approaches. The CoMB-Deep consists of a composite of DL techniques. Initially, it extracts deep spatial features from 10 convolutional neural networks (CNNs). It then performs a feature fusion step using discrete wavelet transform (DWT), a texture analysis method capable of reducing the dimension of fused features. Next, the CoMB-Deep explores the best combination of fused features, enhancing the performance of the classification process using two search strategies. Afterward, it employs two feature selection techniques on the fused feature sets selected in the previous step. A bi-directional long-short term memory (Bi-LSTM) network; a DL-based approach that is utilized for the classification phase. CoMB-Deep maintains two classification categories: binary category for distinguishing between the abnormal and normal cases and multi-class category to identify the subclasses of MB. The results of the CoMB-Deep for both classification categories prove that it is reliable. The results also indicate that the feature sets selected using both search strategies have enhanced the performance of Bi-LSTM compared to individual spatial deep features. CoMB-Deep is compared to related studies to verify its competitiveness, and this comparison confirmed its robustness and outperformance. Hence, CoMB-Deep can help pathologists perform accurate diagnoses, reduce misdiagnosis risks that could occur with manual diagnosis, accelerate the classification procedure, and decrease diagnosis costs.
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Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communications Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria, Egypt
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30
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Attallah O, Sharkas M. GASTRO-CADx: a three stages framework for diagnosing gastrointestinal diseases. PeerJ Comput Sci 2021; 7:e423. [PMID: 33817058 PMCID: PMC7959662 DOI: 10.7717/peerj-cs.423] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Accepted: 02/11/2021] [Indexed: 05/04/2023]
Abstract
Gastrointestinal (GI) diseases are common illnesses that affect the GI tract. Diagnosing these GI diseases is quite expensive, complicated, and challenging. A computer-aided diagnosis (CADx) system based on deep learning (DL) techniques could considerably lower the examination cost processes and increase the speed and quality of diagnosis. Therefore, this article proposes a CADx system called Gastro-CADx to classify several GI diseases using DL techniques. Gastro-CADx involves three progressive stages. Initially, four different CNNs are used as feature extractors to extract spatial features. Most of the related work based on DL approaches extracted spatial features only. However, in the following phase of Gastro-CADx, features extracted in the first stage are applied to the discrete wavelet transform (DWT) and the discrete cosine transform (DCT). DCT and DWT are used to extract temporal-frequency and spatial-frequency features. Additionally, a feature reduction procedure is performed in this stage. Finally, in the third stage of the Gastro-CADx, several combinations of features are fused in a concatenated manner to inspect the effect of feature combination on the output results of the CADx and select the best-fused feature set. Two datasets referred to as Dataset I and II are utilized to evaluate the performance of Gastro-CADx. Results indicated that Gastro-CADx has achieved an accuracy of 97.3% and 99.7% for Dataset I and II respectively. The results were compared with recent related works. The comparison showed that the proposed approach is capable of classifying GI diseases with higher accuracy compared to other work. Thus, it can be used to reduce medical complications, death-rates, in addition to the cost of treatment. It can also help gastroenterologists in producing more accurate diagnosis while lowering inspection time.
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Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communication Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria, Egypt
| | - Maha Sharkas
- Department of Electronics and Communication Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria, Egypt
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31
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Attallah O. MB-AI-His: Histopathological Diagnosis of Pediatric Medulloblastoma and its Subtypes via AI. Diagnostics (Basel) 2021; 11:359. [PMID: 33672752 PMCID: PMC7924641 DOI: 10.3390/diagnostics11020359] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 02/11/2021] [Accepted: 02/11/2021] [Indexed: 12/17/2022] Open
Abstract
Medulloblastoma (MB) is a dangerous malignant pediatric brain tumor that could lead to death. It is considered the most common pediatric cancerous brain tumor. Precise and timely diagnosis of pediatric MB and its four subtypes (defined by the World Health Organization (WHO)) is essential to decide the appropriate follow-up plan and suitable treatments to prevent its progression and reduce mortality rates. Histopathology is the gold standard modality for the diagnosis of MB and its subtypes, but manual diagnosis via a pathologist is very complicated, needs excessive time, and is subjective to the pathologists' expertise and skills, which may lead to variability in the diagnosis or misdiagnosis. The main purpose of the paper is to propose a time-efficient and reliable computer-aided diagnosis (CADx), namely MB-AI-His, for the automatic diagnosis of pediatric MB and its subtypes from histopathological images. The main challenge in this work is the lack of datasets available for the diagnosis of pediatric MB and its four subtypes and the limited related work. Related studies are based on either textural analysis or deep learning (DL) feature extraction methods. These studies used individual features to perform the classification task. However, MB-AI-His combines the benefits of DL techniques and textural analysis feature extraction methods through a cascaded manner. First, it uses three DL convolutional neural networks (CNNs), including DenseNet-201, MobileNet, and ResNet-50 CNNs to extract spatial DL features. Next, it extracts time-frequency features from the spatial DL features based on the discrete wavelet transform (DWT), which is a textural analysis method. Finally, MB-AI-His fuses the three spatial-time-frequency features generated from the three CNNs and DWT using the discrete cosine transform (DCT) and principal component analysis (PCA) to produce a time-efficient CADx system. MB-AI-His merges the privileges of different CNN architectures. MB-AI-His has a binary classification level for classifying among normal and abnormal MB images, and a multi-classification level to classify among the four subtypes of MB. The results of MB-AI-His show that it is accurate and reliable for both the binary and multi-class classification levels. It is also a time-efficient system as both the PCA and DCT methods have efficiently reduced the training execution time. The performance of MB-AI-His is compared with related CADx systems, and the comparison verified the powerfulness of MB-AI-His and its outperforming results. Therefore, it can support pathologists in the accurate and reliable diagnosis of MB and its subtypes from histopathological images. It can also reduce the time and cost of the diagnosis procedure which will correspondingly lead to lower death rates.
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Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communications Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria 1029, Egypt
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32
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Attallah O, Anwar F, Ghanem NM, Ismail MA. Histo-CADx: duo cascaded fusion stages for breast cancer diagnosis from histopathological images. PeerJ Comput Sci 2021; 7:e493. [PMID: 33987459 PMCID: PMC8093954 DOI: 10.7717/peerj-cs.493] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Accepted: 03/26/2021] [Indexed: 05/06/2023]
Abstract
Breast cancer (BC) is one of the most common types of cancer that affects females worldwide. It may lead to irreversible complications and even death due to late diagnosis and treatment. The pathological analysis is considered the gold standard for BC detection, but it is a challenging task. Automatic diagnosis of BC could reduce death rates, by creating a computer aided diagnosis (CADx) system capable of accurately identifying BC at an early stage and decreasing the time consumed by pathologists during examinations. This paper proposes a novel CADx system named Histo-CADx for the automatic diagnosis of BC. Most related studies were based on individual deep learning methods. Also, studies did not examine the influence of fusing features from multiple CNNs and handcrafted features. In addition, related studies did not investigate the best combination of fused features that influence the performance of the CADx. Therefore, Histo-CADx is based on two stages of fusion. The first fusion stage involves the investigation of the impact of fusing several deep learning (DL) techniques with handcrafted feature extraction methods using the auto-encoder DL method. This stage also examines and searches for a suitable set of fused features that could improve the performance of Histo-CADx. The second fusion stage constructs a multiple classifier system (MCS) for fusing outputs from three classifiers, to further improve the accuracy of the proposed Histo-CADx. The performance of Histo-CADx is evaluated using two public datasets; specifically, the BreakHis and the ICIAR 2018 datasets. The results from the analysis of both datasets verified that the two fusion stages of Histo-CADx successfully improved the accuracy of the CADx compared to CADx constructed with individual features. Furthermore, using the auto-encoder for the fusion process has reduced the computation cost of the system. Moreover, the results after the two fusion stages confirmed that Histo-CADx is reliable and has the capacity of classifying BC more accurately compared to other latest studies. Consequently, it can be used by pathologists to help them in the accurate diagnosis of BC. In addition, it can decrease the time and effort needed by medical experts during the examination.
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Affiliation(s)
- Omneya Attallah
- Department of Electronics and Communications Engineering, College of Engineering and Technology, Arab Academy for Science, Technology, and Maritime Transport, Alexandria, Alexandria, Egypt
| | - Fatma Anwar
- Computer and Systems Engineering Department, Alexandria University, Alexandria, Egypt
| | - Nagia M. Ghanem
- Computer and Systems Engineering Department, Alexandria University, Alexandria, Egypt
| | - Mohamed A. Ismail
- Computer and Systems Engineering Department, Alexandria University, Alexandria, Egypt
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A BCI System Based on Motor Imagery for Assisting People with Motor Deficiencies in the Limbs. Brain Sci 2020; 10:brainsci10110864. [PMID: 33212777 PMCID: PMC7697603 DOI: 10.3390/brainsci10110864] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Revised: 10/27/2020] [Accepted: 11/06/2020] [Indexed: 12/26/2022] Open
Abstract
Motor deficiencies constitute a significant problem affecting millions of people worldwide. Such people suffer from a debility in daily functioning, which may lead to decreased and incoherence in daily routines and deteriorate their quality of life (QoL). Thus, there is an essential need for assistive systems to help those people achieve their daily actions and enhance their overall QoL. This study proposes a novel brain–computer interface (BCI) system for assisting people with limb motor disabilities in performing their daily life activities by using their brain signals to control assistive devices. The extraction of useful features is vital for an efficient BCI system. Therefore, the proposed system consists of a hybrid feature set that feeds into three machine-learning (ML) classifiers to classify motor Imagery (MI) tasks. This hybrid feature selection (FS) system is practical, real-time, and an efficient BCI with low computation cost. We investigate different combinations of channels to select the combination that has the highest impact on performance. The results indicate that the highest achieved accuracies using a support vector machine (SVM) classifier are 93.46% and 86.0% for the BCI competition III–IVa dataset and the autocalibration and recurrent adaptation dataset, respectively. These datasets are used to test the performance of the proposed BCI. Also, we verify the effectiveness of the proposed BCI by comparing its performance with recent studies. We show that the proposed system is accurate and efficient. Future work can apply the proposed system to individuals with limb motor disabilities to assist them and test their capability to improve their QoL. Moreover, the forthcoming work can examine the system’s performance in controlling assistive devices such as wheelchairs or artificial limbs.
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Ragab DA, Attallah O. FUSI-CAD: Coronavirus (COVID-19) diagnosis based on the fusion of CNNs and handcrafted features. PeerJ Comput Sci 2020; 6:e306. [PMID: 33816957 PMCID: PMC7924442 DOI: 10.7717/peerj-cs.306] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Accepted: 09/30/2020] [Indexed: 05/19/2023]
Abstract
The precise and rapid diagnosis of coronavirus (COVID-19) at the very primary stage helps doctors to manage patients in high workload conditions. In addition, it prevents the spread of this pandemic virus. Computer-aided diagnosis (CAD) based on artificial intelligence (AI) techniques can be used to distinguish between COVID-19 and non-COVID-19 from the computed tomography (CT) imaging. Furthermore, the CAD systems are capable of delivering an accurate faster COVID-19 diagnosis, which consequently saves time for the disease control and provides an efficient diagnosis compared to laboratory tests. In this study, a novel CAD system called FUSI-CAD based on AI techniques is proposed. Almost all the methods in the literature are based on individual convolutional neural networks (CNN). Consequently, the FUSI-CAD system is based on the fusion of multiple different CNN architectures with three handcrafted features including statistical features and textural analysis features such as discrete wavelet transform (DWT), and the grey level co-occurrence matrix (GLCM) which were not previously utilized in coronavirus diagnosis. The SARS-CoV-2 CT-scan dataset is used to test the performance of the proposed FUSI-CAD. The results show that the proposed system could accurately differentiate between COVID-19 and non-COVID-19 images, as the accuracy achieved is 99%. Additionally, the system proved to be reliable as well. This is because the sensitivity, specificity, and precision attained to 99%. In addition, the diagnostics odds ratio (DOR) is ≥ 100. Furthermore, the results are compared with recent related studies based on the same dataset. The comparison verifies the competence of the proposed FUSI-CAD over the other related CAD systems. Thus, the novel FUSI-CAD system can be employed in real diagnostic scenarios for achieving accurate testing for COVID-19 and avoiding human misdiagnosis that might exist due to human fatigue. It can also reduce the time and exertion made by the radiologists during the examination process.
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Affiliation(s)
- Dina A. Ragab
- Electronics and Communications Engineering Department, Arab Academy for Science, Technology, and Maritime Transport (AASTMT), Alexandria, Egypt
| | - Omneya Attallah
- Electronics and Communications Engineering Department, Arab Academy for Science, Technology, and Maritime Transport (AASTMT), Alexandria, Egypt
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