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For: Roterman I, Banach M, Konieczny L. Application of the Fuzzy Oil Drop Model Describes Amyloid as a Ribbonlike Micelle. Entropy 2017;19:167. [DOI: 10.3390/e19040167] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Number Cited by Other Article(s)
1
Roterman I, Stapor K, Gądek K, Gubała T, Nowakowski P, Fabian P, Konieczny L. On the Dependence of Prion and Amyloid Structure on the Folding Environment. Int J Mol Sci 2021;22:ijms222413494. [PMID: 34948291 PMCID: PMC8707753 DOI: 10.3390/ijms222413494] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Revised: 12/13/2021] [Accepted: 12/14/2021] [Indexed: 01/22/2023]  Open
2
Model of Early Stage Intermediate in Respect to Its Final Structure. Biomolecules 2019;9:biom9120866. [PMID: 31842350 PMCID: PMC6995543 DOI: 10.3390/biom9120866] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Revised: 12/06/2019] [Accepted: 12/10/2019] [Indexed: 12/18/2022]  Open
3
The Amyloid as a Ribbon-Like Micelle in Contrast to Spherical Micelles Represented by Globular Proteins. Molecules 2019;24:molecules24234395. [PMID: 31816829 PMCID: PMC6930452 DOI: 10.3390/molecules24234395] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2019] [Revised: 11/27/2019] [Accepted: 11/29/2019] [Indexed: 01/18/2023]  Open
4
Symmetry and Dissymmetry in Protein Structure—System-Coding Its Biological Specificity. Symmetry (Basel) 2019. [DOI: 10.3390/sym11101215] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
5
Fabian P, Stapor K, Banach M, Ptak-Kaczor M, Konieczny L, Roterman I. Different Synergy in Amyloids and Biologically Active Forms of Proteins. Int J Mol Sci 2019;20:E4436. [PMID: 31505841 PMCID: PMC6769701 DOI: 10.3390/ijms20184436] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2019] [Revised: 08/31/2019] [Accepted: 09/04/2019] [Indexed: 11/16/2022]  Open
6
Structural analysis of the Aβ(11-42) amyloid fibril based on hydrophobicity distribution. J Comput Aided Mol Des 2019;33:665-675. [PMID: 31292794 PMCID: PMC6687686 DOI: 10.1007/s10822-019-00209-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2018] [Accepted: 05/31/2019] [Indexed: 01/11/2023]
7
Taguchi Y, Otaki H, Nishida N. Mechanisms of Strain Diversity of Disease-Associated in-Register Parallel β-Sheet Amyloids and Implications About Prion Strains. Viruses 2019;11:E110. [PMID: 30696005 PMCID: PMC6410106 DOI: 10.3390/v11020110] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2018] [Revised: 01/22/2019] [Accepted: 01/23/2019] [Indexed: 12/16/2022]  Open
8
Banach M, Konieczny L, Roterman I. Secondary and Supersecondary Structure of Proteins in Light of the Structure of Hydrophobic Cores. Methods Mol Biol 2019;1958:347-378. [PMID: 30945229 DOI: 10.1007/978-1-4939-9161-7_19] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
9
Gadzała M, Dułak D, Kalinowska B, Baster Z, Bryliński M, Konieczny L, Banach M, Roterman I. The aqueous environment as an active participant in the protein folding process. J Mol Graph Model 2018;87:227-239. [PMID: 30580160 DOI: 10.1016/j.jmgm.2018.12.008] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2018] [Revised: 12/05/2018] [Accepted: 12/12/2018] [Indexed: 01/27/2023]
10
Dułak D, Gadzała M, Banach M, Ptak M, Wiśniowski Z, Konieczny L, Roterman I. Filamentous Aggregates of Tau Proteins Fulfil Standard Amyloid Criteria Provided by the Fuzzy Oil Drop (FOD) Model. Int J Mol Sci 2018;19:E2910. [PMID: 30257460 PMCID: PMC6213535 DOI: 10.3390/ijms19102910] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2018] [Revised: 09/12/2018] [Accepted: 09/20/2018] [Indexed: 01/02/2023]  Open
11
Dułak D, Banach M, Wiśniowski Z, Konieczny L, Roterman I. Comparison of the structure of Aβ(1-40) amyloid with the one in complex with polyphenol ε-viniferin glucoside (EVG). BIO-ALGORITHMS AND MED-SYSTEMS 2018. [DOI: 10.1515/bams-2018-0008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
12
Roterman I, Banach M, Konieczny L. Propagation of Fibrillar Structural Forms in Proteins Stopped by Naturally Occurring Short Polypeptide Chain Fragments. Pharmaceuticals (Basel) 2017;10:E89. [PMID: 29144442 PMCID: PMC5748646 DOI: 10.3390/ph10040089] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2017] [Revised: 11/02/2017] [Accepted: 11/13/2017] [Indexed: 11/17/2022]  Open
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