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Miller WB, Baluška F, Reber AS, Slijepčević P. Biology in the 21st century: Natural selection is cognitive selection. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2024; 190:170-184. [PMID: 38740143 DOI: 10.1016/j.pbiomolbio.2024.05.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2024] [Revised: 05/02/2024] [Accepted: 05/10/2024] [Indexed: 05/16/2024]
Abstract
Natural selection has a formal definition as the natural process that results in the survival and reproductive success of individuals or groups best adjusted to their environment, leading to the perpetuation of those genetic qualities best suited to that organism's environmental niche. Within conventional Neo-Darwinism, the largest source of those variations that can be selected is presumed to be secondary to random genetic mutations. As these arise, natural selection sustains adaptive traits in the context of a 'struggle for existence'. Consequently, in the 20th century, natural selection was generally portrayed as the primary evolutionary driver. The 21st century offers a comprehensive alternative to Neo-Darwinian dogma within Cognition-Based Evolution. The substantial differences between these respective evolutionary frameworks have been most recently articulated in a revision of Crick's Central Dogma, a former centerpiece of Neo-Darwinism. The argument is now advanced that the concept of natural selection should also be comprehensively reappraised. Cognitive selection is presented as a more precise term better suited to 21st century biology. Since cognition began with life's origin, natural selection represents cognitive selection.
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Affiliation(s)
| | - František Baluška
- Institute of Cellular and Molecular Botany, University of Bonn, Germany.
| | - Arthur S Reber
- Department of Psychology, University of British Columbia, Vancouver, BC, Canada.
| | - Predrag Slijepčević
- Department of Life Sciences College of Health, Medicine and Life Sciences, University of Brunel, UK.
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Gershenson C. Information, computation, and causality in living systems: Comment on "Unified representation of life's basic properties by a 3-species stochastic cubic autocatalytic reaction-diffusion system of equations", by A.P. Muñuzuri and J. Pérez-Mercader. Phys Life Rev 2023; 46:248-249. [PMID: 37506592 DOI: 10.1016/j.plrev.2023.07.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 07/13/2023] [Indexed: 07/30/2023]
Affiliation(s)
- Carlos Gershenson
- Instituto de Investigaciones en Matemáticas Aplicadas y Sistemas, Universidad Nacional Autónoma de México, Circuito Escolar s/n, Mexico, 04510, CDMX, Mexico; Centro de Ciencias de la Complejidad, Universidad Nacional Autónoma de México, Circuito Maestro Mario de la Cueva s/n, Mexico, 04510, CDMX, Mexico; Santa Fe Institute, 399 Hyde Park Rd., Santa Fe, 87501, NM, USA.
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Gahrn-Andersen R. Informational Resilience in the Human Cognitive Ecology. ENTROPY (BASEL, SWITZERLAND) 2023; 25:1247. [PMID: 37761546 PMCID: PMC10528217 DOI: 10.3390/e25091247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 08/11/2023] [Accepted: 08/21/2023] [Indexed: 09/29/2023]
Abstract
Resilience is a basic trait of cognitive systems and fundamentally connected to their autopoietic organization. It plays a vital role in maintaining the identity of cognitive systems in the face of external threats and perturbances. However, when examining resilience in the context of autopoiesis, an overlooked issue arises: the autopoietic theory formulated by Maturana and Varela (1980) renders traditional Shannon information obsolete, highlighting that information should not be ascribed a role in cognitive systems in a general sense. This paper examines the current situation and suggests a possible way forward by exploring an affordance-based view on information, derived from radical cognitive science, which is exempted from Maturana and Varela's critique. Specifically, it argues that the impact of social influence on affordance use is crucial when considering how resilience can manifest in informational relations pertaining to the human cognitive ecology.
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Affiliation(s)
- Rasmus Gahrn-Andersen
- Department of Culture and Language, University of Southern Denmark, 4200 Slagelse, Denmark
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Kauffman SA, Roli A. A third transition in science? Interface Focus 2023; 13:20220063. [PMID: 37065266 PMCID: PMC10102722 DOI: 10.1098/rsfs.2022.0063] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 01/17/2023] [Indexed: 04/18/2023] Open
Abstract
Since Newton, classical and quantum physics depend upon the 'Newtonian paradigm'. The relevant variables of the system are identified. For example, we identify the position and momentum of classical particles. Laws of motion in differential form connecting the variables are formulated. An example is Newton's three laws of motion. The boundary conditions creating the phase space of all possible values of the variables are defined. Then, given any initial condition, the differential equations of motion are integrated to yield an entailed trajectory in the prestated phase space. It is fundamental to the Newtonian paradigm that the set of possibilities that constitute the phase space is always definable and fixed ahead of time. This fails for the diachronic evolution of ever-new adaptations in any biosphere. Living cells achieve constraint closure and construct themselves. Thus, living cells, evolving via heritable variation and natural selection, adaptively construct new-in-the-universe possibilities. We can neither define nor deduce the evolving phase space: we can use no mathematics based on set theory to do so. We cannot write or solve differential equations for the diachronic evolution of ever-new adaptations in a biosphere. Evolving biospheres are outside the Newtonian paradigm. There can be no theory of everything that entails all that comes to exist. We face a third major transition in science beyond the Pythagorean dream that 'all is number' echoed by Newtonian physics. However, we begin to understand the emergent creativity of an evolving biosphere: emergence is not engineering.
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Affiliation(s)
| | - Andrea Roli
- Department of Computer Science and Engineering, Università di Bologna, Campus of Cesena, Cesena, Italy
- European Centre for Living Technology, Venezia, Italy
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Marshall P. The role of quantum mechanics in cognition based evolution. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2023; 180-181:131-139. [PMID: 37142170 DOI: 10.1016/j.pbiomolbio.2023.04.007] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2023] [Accepted: 04/17/2023] [Indexed: 05/06/2023]
Abstract
In 2021 I noted that in all information-based systems we understand, Cognition creates Code, which controls Chemical reactions. Known agents write software which controls hardware, and not the other way around. I proposed the same is true in all of biology. Though the textbook description of cause and effect in biology proposes the reverse, that Chemical reactions produce Code from which Cognition emerges, there are no examples in the literature demonstrating either step. A mathematical proof for the first step, cognition generating code, is based on Turing's halting problem. The second step, code controlling chemical reactions, is the role of the genetic code. Thus a central question in biology: What is the nature and source of cognition? In this paper I propose a relationship between biology and Quantum Mechanics (QM), hypothesizing that the same principle that enables an observer to collapse a wave function also grants biology its agency: the organism's ability to act on the world instead of merely being a passive recipient. Just as all living cells are cognitive (Shapiro 2021, 2007; McClintock 1984; Lyon 2015; Levin 2019, Pascal and Pross, 2022), I propose humans are quantum observers because we are made of cells and all cells are observers. This supports the century-old view that in QM, the observer does not merely record the event but plays a fundamental role in its outcome.The classical world is driven by laws, which are deductive; the quantum world is driven by choices, which are inductive. When the two are combined, they form the master feedback loop of perception and action for all biology. In this paper I apply basic definitions of induction, deduction and computation to known properties of QM to show that the organism altering itself (and its environment) is a whole shaping its parts. It is not merely parts comprising a whole. I propose that an observer collapsing the wave function is the physical mechanism for producing negentropy. The way forward in solving the information problem in biology is understanding the relationship between cognition and QM.
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Affiliation(s)
- Perry Marshall
- Evolution 2.0, 805 Lake Street #295, Oak Park, IL, 60301, USA.
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Kauffman S. Is There a Fourth Law for Non-Ergodic Systems That Do Work to Construct Their Expanding Phase Space? ENTROPY (BASEL, SWITZERLAND) 2022; 24:1383. [PMID: 37420403 DOI: 10.3390/e24101383] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 09/18/2022] [Accepted: 09/24/2022] [Indexed: 07/09/2023]
Abstract
Substantial grounds exist to doubt the universal validity of the Newtonian Paradigm that requires a pre-stated, fixed phase space. Therefore, the Second Law of Thermodynamics, stated only for fixed phase spaces, is also in doubt. The validity of the Newtonian Paradigm may stop at the onset of evolving life. Living cells and organisms are Kantian Wholes that achieve constraint closure, so do thermodynamic work to construct themselves. Evolution constructs an ever-expanding phase space. Thus, we can ask the free energy cost per added degree of freedom. That cost is roughly linear or sublinear in the mass constructed. However, the resulting expansion of the phase space is exponential or even hyperbolic. Thus, the evolving biosphere does thermodynamic work to construct itself into an ever-smaller sub-domain of its ever-expanding phase space at ever less free energy cost per added degree of freedom. The universe is not correspondingly disordered. Entropy, remarkably, really does decrease. A testable implication of this, termed here the Fourth Law of Thermodynamics, is that at constant energy input, the biosphere will construct itself into an ever more localized subregion of its ever-expanding phase space. This is confirmed. The energy input from the sun has been roughly constant for the 4 billion years since life started to evolve. The localization of our current biosphere in its protein phase space is at least 10-2540. The localization of our biosphere with respect to all possible molecules of CHNOPS comprised of up to 350,000 atoms is also extremely high. The universe has not been correspondingly disordered. Entropy has decreased. The universality of the Second Law fails.
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Affiliation(s)
- Stuart Kauffman
- Department of Biophysics and Biochemistry, University of Pennsylvania, Philadelphia, PA 19104, USA
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Roli A, Kauffman SA. The hiatus between organism and machine evolution: Contrasting mixed microbial communities with robots. Biosystems 2022; 222:104775. [PMID: 36116612 DOI: 10.1016/j.biosystems.2022.104775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 08/29/2022] [Accepted: 08/29/2022] [Indexed: 11/02/2022]
Abstract
Mixed microbial communities, usually composed of various bacterial and fungal species, are fundamental in a plethora of environments, from soil to human gut and skin. Their evolution is a paradigmatic example of intertwined dynamics, where not just the relations among species plays a role, but also the opportunities - and possible harms - that each species presents to the others. These opportunities are in fact affordances, which can be seized by heritable variations and selection. In this paper, starting from a systemic viewpoint of mixed microbial communities, we focus on the pivotal role of affordances in evolution and we contrast it to the artificial evolution of programs and robots. We maintain that the two realms are neatly separated, in that natural evolution proceeds by extending the space of its possibilities in a completely open way, while the latter is inherently limited by the algorithmic framework in which it is defined. This discrepancy characterizes also an envisioned setting in which robots evolve in the physical world. We present arguments supporting our claim and we propose an experimental setting for assessing our statements. Rather than just discussing the limitations of the artificial evolution of machines, the aim of this contribution is to emphasize the tremendous potential of the evolution of the biosphere, beautifully represented by the evolution of communities of microbes.
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Affiliation(s)
- Andrea Roli
- Department of Computer Science and Engineering, Campus of Cesena, Alma Mater Studiorum Università di Bologna, Via Dell'Università 50, Cesena, 47522, Italy; European Centre for Living Technology, Dorsoduro 3911, Venezia, 30123, Italy.
| | - Stuart A Kauffman
- Institute for Systems Biology, 401 Terry Avenue North, Seattle, 98109, WA, USA.
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Kauffman SA, Roli A. What is consciousness? Artificial intelligence, real intelligence, quantum mind and qualia. Biol J Linn Soc Lond 2022. [DOI: 10.1093/biolinnean/blac092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Abstract
We approach the question ‘What is consciousness?’ in a new way, not as Descartes’ ‘systematic doubt’, but as how organisms find their way in their world. Finding one’s way involves finding possible uses of features of the world that might be beneficial or avoiding those that might be harmful. ‘Possible uses of X to accomplish Y’ are ‘affordances’. The number of uses of X is indefinite (or unknown), the different uses are unordered, are not listable, and are not deducible from one another. All biological adaptations are either affordances seized by heritable variation and selection or, far faster, by the organism acting in its world finding uses of X to accomplish Y. Based on this, we reach rather astonishing conclusions:
1. Artificial general intelligence based on universal Turing machines (UTMs) is not possible, since UTMs cannot ‘find’ novel affordances.
2. Brain-mind is not purely classical physics for no classical physics system can be an analogue computer whose dynamical behaviour can be isomorphic to ‘possible uses’.
3. Brain-mind must be partly quantum—supported by increasing evidence at 6.0 to 7.3 sigma.
4. Based on Heisenberg’s interpretation of the quantum state as ‘potentia’ converted to ‘actuals’ by measurement, where this interpretation is not a substance dualism, a natural hypothesis is that mind actualizes potentia. This is supported at 5.2 sigma. Then mind’s actualizations of entangled brain-mind-world states are experienced as qualia and allow ‘seeing’ or ‘perceiving’ of uses of X to accomplish Y. We can and do jury-rig. Computers cannot.
5. Beyond familiar quantum computers, we discuss the potentialities of trans-Turing systems.
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Affiliation(s)
| | - Andrea Roli
- Department of Computer Science and Engineering, Alma Mater Studiorum Università di Bologna , Campus of Cesena, Via dell’Università, Cesena , Italy
- European Centre for Living Technology , Dorsoduro, Venezia , Italy
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Roli A, Jaeger J, Kauffman SA. How Organisms Come to Know the World: Fundamental Limits on Artificial General Intelligence. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2021.806283] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Artificial intelligence has made tremendous advances since its inception about seventy years ago. Self-driving cars, programs beating experts at complex games, and smart robots capable of assisting people that need care are just some among the successful examples of machine intelligence. This kind of progress might entice us to envision a society populated by autonomous robots capable of performing the same tasks humans do in the near future. This prospect seems limited only by the power and complexity of current computational devices, which is improving fast. However, there are several significant obstacles on this path. General intelligence involves situational reasoning, taking perspectives, choosing goals, and an ability to deal with ambiguous information. We observe that all of these characteristics are connected to the ability of identifying and exploiting new affordances—opportunities (or impediments) on the path of an agent to achieve its goals. A general example of an affordance is the use of an object in the hands of an agent. We show that it is impossible to predefine a list of such uses. Therefore, they cannot be treated algorithmically. This means that “AI agents” and organisms differ in their ability to leverage new affordances. Only organisms can do this. This implies that true AGI is not achievable in the current algorithmic frame of AI research. It also has important consequences for the theory of evolution. We argue that organismic agency is strictly required for truly open-ended evolution through radical emergence. We discuss the diverse ramifications of this argument, not only in AI research and evolution, but also for the philosophy of science.
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