Soil Bioremediation: Overview of Technologies and Trends

Methanogenesis coupled hydrocarbon biodegradation enhanced by ferric and sulphate ions

Bioremediation provides an environmentally sound solution for hydrocarbon removal. Although bioremediation under anoxic conditions is slow, it can be coupled with methanogenesis and is suitable for energy recovery. By altering conditions and supplementing alternative terminal electron acceptors to the system to induce syntrophic partners of the methanogens, this process can be enhanced. In this study, we investigated a hydrocarbon-degrading microbial community derived from chronically contaminated soil. Various hydrocarbon mixtures were used during our experiments in the presence of different electron acceptors. In addition, we performed whole metagenome sequencing to identify the main actors of hydrocarbon biodegradation in the samples. Our results showed that the addition of ferric ions or sulphate increased the methane yield. Furthermore, the addition of CO2, ferric ion or sulphate enhanced the biodegradation of alkanes. A significant increase in biodegradation was observed in the presence of ferric ions or sulphate in the case of all aromatic components, while naphthalene and phenanthrene degradation was also enhanced by CO2. Metagenome analysis revealed that Cellulomonas sp. is the most abundant in the presence of alkanes, while Ruminococcus and Faecalibacterium spp. are prevalent in aromatics-supplemented samples. From the recovery of 25 genomes, it was concluded that the main pathway of hydrocarbon activation was fumarate addition in both Cellulomonas, Ruminococcus and Faecalibacterium. Chloroflexota bacteria can utilise the central metabolites of aromatics biodegradation via ATP-independent benzoyl-CoA reduction. KEY POINTS: • Methanogenesis and hydrocarbon biodegradation were enhanced by Fe3+ or SO42- • Cellulomonas, Ruminococcus and Faecalibacterium can be candidates for the main hydrocarbon degraders • Chloroflexota bacteria can utilise the central metabolites of aromatics degradation.

Unlocking the potential of soil microbial communities for bioremediation of emerging organic contaminants: omics-based approaches

The remediation of emerging contaminants presents a pressing environmental challenge, necessitating innovative approaches for effective mitigation. This review article delves into the untapped potential of soil microbial communities in the bioremediation of emerging contaminants. Bioremediation, while a promising method, often proves time-consuming and requires a deep comprehension of microbial intricacies for enhancement. Given the challenges presented by the inability to culture many of these microorganisms, conventional methods are inadequate for achieving this goal. While omics-based methods provide an innovative approach to understanding the fundamental aspects, processes, and connections among microorganisms that are essential for improving bioremediation strategies. By exploring the latest advancements in omics technologies, this review aims to shed light on how these approaches can unlock the hidden capabilities of soil microbial communities, paving the way for more efficient and sustainable remediation solutions.

The Physicochemical and Functional Properties of Biosurfactants: A Review

Surfactants, also known as surface-active agents, have emerged as an important class of compounds with a wide range of applications. However, the use of chemical-derived surfactants must be restricted due to their potential adverse impact on the ecosystem and the health of human and other living organisms. In the past few years, there has been a growing inclination towards natural-derived alternatives, particularly microbial surfactants, as substitutes for synthetic or chemical-based counterparts. Microbial biosurfactants are abundantly found in bacterial species, predominantly Bacillus spp. and Pseudomonas spp. The chemical structures of biosurfactants involve the complexation of lipids with carbohydrates (glycolipoproteins and glycolipids), peptides (lipopeptides), and phosphates (phospholipids). Lipopeptides, in particular, have been the subject of extensive research due to their versatile properties, including emulsifying, antimicrobial, anticancer, and anti-inflammatory properties. This review provides an update on research progress in the classification of surfactants. Furthermore, it explores various bacterial biosurfactants and their functionalities, along with their advantages over synthetic surfactants. Finally, the potential applications of these biosurfactants in many industries and insights into future research directions are discussed.

The function of microbial enzymes in breaking down soil contaminated with pesticides: a review

The use of pesticides and the subsequent accumulation of residues in the soil has become a worldwide problem. Organochlorine (OC) pesticides have spread widely in the environment and caused contamination from past agricultural activities. This article reviews the bioremediation of pesticide compounds in soil using microbial enzymes, including the enzymatic degradation pathway and the recent development of enzyme-mediated bioremediation. Enzyme-mediated bioremediation is divided into phase I and phase II, where the former increases the solubility of pesticide compounds through oxidation-reduction and hydrolysis reactions, while the latter transforms toxic pollutants into less toxic or nontoxic products through conjugation reactions. The identified enzymes that can degrade OC insecticides include dehalogenases, phenol hydroxylase, and laccases. Recent developments to improve enzyme-mediated bioremediation include immobilization, encapsulation, and protein engineering, which ensure its stability, recyclability, handling and storage, and better control of the reaction.

Strategies for mitigation of pesticides from the environment through alternative approaches: A review of recent developments and future prospects

Chemical-based peticides are having negative impacts on both the healths of human beings and plants as well. The World Health Organisation (WHO), reported that each year, >25 million individuals in poor nations are having acute pesticide poisoning cases along with 20,000 fatal injuries at global level. Normally, only ∼0.1% of the pesticide reaches to the intended targets, and rest amount is expected to come into the food chain/environment for a longer period of time. Therefore, it is crucial to reduce the amounts of pesticides present in the soil. Physical or chemical treatments are either expensive or incapable to do so. Hence, pesticide detoxification can be achieved through bioremediation/biotechnologies, including nano-based methodologies, integrated approaches etc. These are relatively affordable, efficient and environmentally sound methods. Therefore, alternate strategies like as advanced biotechnological tools like as CRISPR Cas system, RNAi and genetic engineering for development of insects and pest resistant plants which are directly involved in the development of disease- and pest-resistant plants and indirectly reduce the use of pesticides. Omics tools and multi omics approaches like metagenomics, genomics, transcriptomics, proteomics, and metabolomics for the efficient functional gene mining and their validation for bioremediation of pesticides also discussed from the literatures. Overall, the review focuses on the most recent advancements in bioremediation methods to lessen the effects of pesticides along with the role of microorganisms in pesticides elimination. Further, pesticide detection is also a big challenge which can be done by using HPLC, GC, SERS, and LSPR ELISA etc. which have also been described in this review.

Biotechnological Utilization of Agro-Industrial Residues and By-Products-Sustainable Production of Biosurfactants

The importance and interest in the efficient use and valorization of agro-industrial residues and by-products have grown due to environmental problems associated with improper disposal. Biotechnological production processes, including microbial biosurfactant production, represent a sustainable way to utilize agro-industrial residues and by-products, which are applied as substrates in these processes. Biosurfactants produced by microorganisms using renewable resources are a viable alternative to traditional petrochemical surfactants and have several potential uses in a wide range of industrial sectors due to their minimal ecotoxicity, easy biodegradability, and moderate production conditions. The common applications of biosurfactants, besides in food industry as food additives and preservatives, are in agriculture, environmental protection, the cosmetics and pharmaceutical industry, wastewater treatment, the petroleum industry, etc. This review aims to summarize the comprehensive scientific research related to the use of various agro-industrial residues and by-products in the microbial production of biosurfactants, as well as to emphasize the present state and the importance of their sustainable production. Additionally, based on the available biosurfactant market analysis datasets and research studies, the current situation in science and industry and the future perspectives of microbial biosurfactant production have been discussed.

Combining microbiome and pseudotargeted metabolomics revealed the alleviative mechanism of Cupriavidus sp. WS2 on the cadmium toxicity in Vicia unijuga A.Br

Cadmium (Cd) pollution is one of the most severe toxic metals pollution in grassland. Vicia unijuga (V. unijuga) A.Br. planted nearby the grassland farming are facing the risk of high Cd contamination. Here, we investigated the beneficial effects of a highly Cd tolerant rhizosphere bacterium, Cupriavidus sp. WS2, on Cd contaminated V. unijuga. Through plot experiments, we set up four groups of treatments: the control group (without WS2 or Cd), the Cd group (with only Cd addition), the WS2 group (with only WS2 addition), and the WS2/Cd group (with WS2 and Cd addition), and analyzed the changes in physiological indicators, rhizosphere microorganisms, and stem and leaf metabolites of V. unijuga. Results of physiological indicators indicated that Cupriavidus sp. WS2 had strong absorption and accumulation capacity of Cd, exogenous addition of strain WS2 remarkably decreased the Cd concentrations, and increased the plant heights, the biomass, the total protein concentrations, the chlorophyll contents and the photosynthetic rate in stems and leaves of V. unijuga under Cd stress. Cd treatment increased the abundance of Cd tolerant bacterial genera in rhizosphere microbiome, but these genera were down-regulated in the WS2/Cd group. Pseudotargeted metabolomic results showed that six common differential metabolites associated with antioxidant stress were increased after co-culture with WS2. In addition, WS2 activated the antioxidant system including glutathione (GSH) and catalase (CAT), reduced the contents of oxidative stress markers including malondialdehyde (MDA) and hydrogen peroxide (H2O2) in V. unijuga under Cd stress. Taken together, this study revealed that Cupriavidus sp.WS2 alleviated the toxicity of V. unijuga under Cd exposure by activating the antioxidant system, increasing the antioxidant metabolites, and reducing the oxidative stress markers.

Sustainable biosurfactant production from secondary feedstock-recent advances, process optimization and perspectives

Biosurfactants have garnered increased attention lately due to their superiority of their properties over fossil-derived counterparts. While the cost of production remains a significant hurdle to surpass synthetic surfactants, biosurfactants have been anticipated to gain a larger market share in the coming decades. Among these, glycolipids, a type of low-molecular-weight biosurfactant, stand out for their efficacy in reducing surface and interfacial tension, which made them highly sought-after for various surfactant-related applications. Glycolipids are composed of hydrophilic carbohydrate moieties linked to hydrophobic fatty acid chains through ester bonds that mainly include rhamnolipids, trehalose lipids, sophorolipids, and mannosylerythritol lipids. This review highlights the current landscape of glycolipids and covers specific glycolipid productivity and the diverse range of products found in the global market. Applications such as bioremediation, food processing, petroleum refining, biomedical uses, and increasing agriculture output have been discussed. Additionally, the latest advancements in production cost reduction for glycolipid and the challenges of utilizing second-generation feedstocks for sustainable production are also thoroughly examined. Overall, this review proposes a balance between environmental advantages, economic viability, and societal benefits through the optimized integration of secondary feedstocks in biosurfactant production.

Slow-release microencapsulates containing nanoliposomes for bioremediation of soil hydrocarbons contaminated

Encapsulation and nutrient addition in bacterial formulations have disadvantages concerning cell viability during release, storage, and under field conditions. Then, the objective of this work was to encapsulate a bacterial consortium with hydrocarbon-degrading capacities in different matrices composed of cross-linked alginate/ polyvinyl alcohol /halloysite beads (M1, M2, and M3) containing nanoliposomes loaded with or without nutrients and evaluate their viability and release in a liquid medium, and soil (microcosmos). Also, evaluate their capacity to remove total petroleum hydrocarbons (TPH) for 165 days and matrices characterization. The encapsulate consortium showed a quick adaptation to contaminated soil and a percentage of removal (PR) of TPH up to 30% after seven days. All the matrices displayed a PR of up to 90% after 165 days. The matrix M2 displayed significant resistance to degradation and higher cell viability with a PR of 94%. This result supports the encapsulation of bacteria in a sustainable matrix supplemented with nutrients as a well-looked strategy for improving viability and survival and, therefore, enhancing their effectiveness in the remediation of hydrocarbon-contaminated soils.

A comprehensive study on diesel oil bioremediation under microcosm conditions using a combined microbiological, enzymatic, mass spectrometry, and metabarcoding approach

This study aims at the application of a marine fungal consortium (Aspergillus sclerotiorum CRM 348 and Cryptococcus laurentii CRM 707) for the bioremediation of diesel oil-contaminated soil under microcosm conditions. The impact of biostimulation (BS) and/or bioaugmentation (BA) treatments on diesel-oil biodegradation, soil quality, and the structure of the microbial community were studied. The use of the fungal consortium together with nutrients (BA/BS) resulted in a TPH (Total Petroleum Hydrocarbon) degradation 42% higher than that obtained by natural attenuation (NA) within 120 days. For the same period, a 72 to 92% removal of short-chain alkanes (C12 to C19) was obtained by BA/BS, while only 3 to 65% removal was achieved by NA. BA/BS also showed high degradation efficiency of long-chain alkanes (C20 to C24) at 120 days, reaching 90 and 92% of degradation of icosane and heneicosane, respectively. In contrast, an increase in the levels of cyclosiloxanes (characterized as bacterial bioemulsifiers and biosurfactants) was observed in the soil treated by the consortium. Conversely, the NA presented a maximum of 37% of degradation of these alkane fractions. The 5-ringed PAH benzo(a)pyrene, was removed significantly better with the BA/BS treatment than with the NA (48 vs. 38 % of biodegradation, respectively). Metabarcoding analysis revealed that BA/BS caused a decrease in the soil microbial diversity with a concomitant increase in the abundance of specific microbial groups, including hydrocarbon-degrading (bacteria and fungi) and also an enhancement in soil microbial activity. Our results highlight the great potential of this consortium for soil treatment after diesel spills, as well as the relevance of the massive sequencing, enzymatic, microbiological and GC-HRMS analyses for a better understanding of diesel bioremediation.

Simultaneous remediation of arsenic and organic chemicals contaminated soil and groundwater using chemical oxidation and precipitation/stabilization: a case study

After the departure of industrial facilities, reuse of the land in developed cities in China is problematic, due to the land contamination issues. The rapid remediation of sites with complex contamination is crucial and urgently needed. Herein, the case of on-site remediation of arsenic (As) in soil, as well as benzo(a)pyrene, total petroleum hydrocarbons, and As in groundwater was reported. For contaminated soil, the oxidant and deactivator (consisting of 20% sodium persulfate, 40% ferrous sulfate (FeSO4), and 40% portland cement) were applied to oxidize and immobilize As. As a result, the total amount and lixivium concentration of As were constrained under 20 mg/kg and 0.01 mg/L, respectively. Meanwhile, for contaminated groundwater, As and organic contaminants were treated by FeSO4/ozone and FeSO4/hydrogen peroxide with mass ratios of 1:5 and 1:8, respectively. The continuous monitoring of contaminants in 22 monitoring wells shown that all contaminants in groundwater were treated to meet the standards. In addition, the risk of secondary pollution and operation cost was effectively reduced by proper disposal and resourceful utilization. The findings indicated that the method of oxidation and precipitation/stabilization is technically, environmentally, and economically feasible for the remediation of contaminated sites with similar complex pollutants.

Dosage concentration and pulsing frequency affect the degradation efficiency in simulated bacterial polycyclic aromatic hydrocarbon-degrading cultures

A major source of anthropogenic polycyclic aromatic hydrocarbon (PAH) inputs into marine environments are diffuse emissions which result in low PAH concentrations in the ocean water, posing a potential threat for the affected ecosystems. However, the remediation of low-dosage PAH contaminations through microbial processes remains largely unknown. Here, we developed a process-based numerical model to simulate batch cultures receiving repeated low-dosage naphthalene pulses compared to the conventionally used one-time high-dosage. Pulsing frequency as well as dosage concentration had a large impact on the degradation efficiency. After 10 days, 99.7%, 97.2%, 86.6%, or 83.5% of the 145 mg L^-1 naphthalene was degraded when given as a one-time high-dosage or in 2, 5, or 10 repeated low-concentration dosages equally spaced throughout the experiment, respectively. If the simulation was altered, giving the system that received 10 pulses time to recover to 99.7%, pulsing patterns affected the degradation of naphthalene. When pulsing 10 days at once per day, naphthalene accumulated following each pulse and if the degradation was allowed to continue until the recovered state was reached, the incubation time was prolonged to 17 days with a generation time of 3.81 days. If a full recovery was conditional before the next pulse was added, the scenario elongated to 55 days and generation time increased to 14.15 days. This indicates that dissolution kinetics dominate biodegradation kinetics, and the biomass concentration of PAH-degrading bacteria alone is not a sufficient indicator for quantifying active biodegradation. Applying those findings to the environment, a one-time input of a high dosage is potentially degraded faster than repeated low-dosage PAH pollution and repeated low-dosage input could lead to PAH accumulation in vulnerable pristine environments. Further research on the overlooked field of chronic low-dosage PAH contamination is necessary.

Treatment of Motor Oil-Contaminated Soil with Green Surfactant Using a Mobile Remediation System

Leak of fuels and lubricants occurring during exploration, distribution, refining and storage operations is the major cause of environmental pollution due to petroderivatives dispersion. The quick use of a series of physicochemical and biological techniques is needed to drastically reduce the magnitude of damage provoked by these pollutants. Among them, soil washing proved to be an effective alternative to the remediation of hydrocarbon-polluted sites, mainly if combined with surfactant utilization. However, the direct use of surfactants can lead to problems related to the toxicity and dispersion of the resulting by-products, as the majority of marketed surfactants are produced from oil derivatives. In this context, green surfactants appear as a promising alternative to their synthetic counterpart. In the present study, two green surfactants, i.e., a chemically synthesized biobased surfactant and a Starmerella bombicola biosurfactant, were applied in soil decontamination tests using a concrete mixer-type Mobile Soil Remediation System (MSRS). The system was designed and developed with 3D printing based on bench-scale results. A commercial biosurfactant was formulated based on the microbial surfactant, which was compared with the biobased surfactant in various experimental conditions. A set of factorial designs combined with Response Surface Methodology was used to select the optimal conditions for pollutant removal using the prototype. The following variables were tested: Surfactant type, Surfactant volume, Surfactant dilution, Contaminant concentration, Soil type, Soil mass, Washing duration, Tank tilt angle, Mixing speed, and Type of basket. Under the optimized experimental condition, the commercial biosurfactant allowed to remove 92.4% of the motor oil adsorbed in the sand. These results demonstrate the possibility of using natural surfactants and the development of novel mechanical technologies to degrade hydrocarbons with economic earnings for oil industry.

An alternative approach towards nitrification and bioremediation of wastewater from aquaponics using biofilm-based bioreactors: A review

Aquaponics combines the advantages of aquaculture and hydroponics as it suits the urban environment where a lack of agricultural land and water resources is observed. It is an ecologically sound system that completely reuses its system waste as plant fertilizer. It offers sustainable water savings, making it a supreme technology for food production. The two major processes that hold the system together are nitrification and denitrification. The remains of fish in form of ammonia reach the bio filters where it is converted into nitrite and further into nitrate in presence of nitrifying and denitrifying bacteria. Nitrate eventually is taken up by the plants. However, even after the uptake from the flow stream, the effluent contains remaining ammonium and nitrates, which cannot be directly released into the environment. In this review it is suggested how integrating the biofilm-based bioreactors in addition to aquaculture and hydroponics eliminates the possibility of remains of total ammonia nitrogen [TAN] contents, leading to bioremediation of effluent water from the system. Effluent water after releasing from a bioreactor can be reused in an aquaculture system, conditions provided in these bioreactors promote the growth of required bacteria and encourages the mutual development of plants and fishes and eventually leading to bioremediation of wastewater from aquaponics.

Emerging soil contamination of antibiotics resistance bacteria (ARB) carrying genes (ARGs): New challenges for soil remediation and conservation

Soil plays a vital role as a nutrient source for microflora and plants in ecosystems. The accumulation and proliferation of antibiotics resistance bacteria (ARB) and antibiotics resistance genes (ARGs) causes emerging soil contamination and pollution, posing new challenges for soil remediation, recovery, and conservation. Fertilizer application in agriculture is one of the most important sources of ARB and ARGs contamination in soils. The recent existing techniques for the remediation of soil polluted with ARB and ARGs are very limited in terms of ARB and ARGs removal in soil. Bioelectrochemical remediation using bioelectrochemical systems such as microbial fuel cells and microbial electrolysis cells are promising technologies for the removal of ARB and ARGs in soil. Herein, diverse sources of ARB and ARGs in soil have been reviewed, their effects on soil microbial diversity have been analyzed, and the causes of ARB and ARGs rapid proliferation in soil are explained. Bioelectrochemical systems used for the remediation of soil contaminated with ARB and ARGs is still in its infancy stage and presents serious disadvantage and limits, therefore it needs to be well understood and implemented. In general, merging soil contamination of ARB and ARGs is an increasing concern threatening the soil ecosystem while the remediation technologies are still challenging. Efforts need to be made to develop new, effective, and efficient technologies for soil remediation and conservation to tackle the spread of ARB and ARGs and overcome the new challenges posed by ARB and ARGs contamination in soil.

A Green Approach Used for Heavy Metals 'Phytoremediation' Via Invasive Plant Species to Mitigate Environmental Pollution: A Review

Heavy metals (HMs) normally occur in nature and are rapidly released into ecosystems by anthropogenic activities, leading to a series of threats to plant productivity as well as human health. Phytoremediation is a clean, eco-friendly, and cost-effective method for reducing soil toxicity, particularly in weedy plants (invasive plant species (IPS)). This method provides a favorable tool for HM hyperaccumulation using invasive plants. Improving the phytoremediation strategy requires a profound knowledge of HM uptake and translocation as well as the development of resistance or tolerance to HMs. This review describes a comprehensive mechanism of uptake and translocation of HMs and their subsequent detoxification with the IPS via phytoremediation. Additionally, the improvement of phytoremediation through advanced biotechnological strategies, including genetic engineering, nanoparticles, microorganisms, CRISPR-Cas9, and protein basis, is discussed. In summary, this appraisal will provide a new platform for the uptake, translocation, and detoxification of HMs via the phytoremediation process of the IPS.

Soil washing of total petroleum and polycyclic aromatic hydrocarbons from crude oil-contaminated ultisol using aqueous extracts of waterleaf

Ultisols are acidic soils found in humid climates and are known for poor fertility. Crude oil impacted ultisols, therefore, require special treatment measures to account for nutrient loss during treatment. In this paper, we report the utilization of a food waste, aqueous extracts of waterleaf (Talinum triangulare), as a plant-derived surfactant to wash simulated crude oil-contaminated soils. The soils before and after washing were monitored for microbial loads, nutrient parameters, physicochemical characteristics, total petroleum hydrocarbons (TPHs) and polycyclic aromatic hydrocarbons (PAHs). Although higher amounts of PAHs (up to 100%) were removed compared to TPHs (up to 95.7%), the results revealed that the efficiency of the waterleaf extracts was comparable to that of a commercial surfactant sodium dodecyl sulphate. However, soils washed with the waterleaf extracts retained some significant amounts of nutrients and favourable pH moderation. In both surfactants, soil microbial loads reduced significantly. Overall, the aqueous waterleaf extracts showed potential as ecofriendly surfactants and nutrients retainer during soil washing of contaminated ultisols.

Potential implementation of trees to remediate contaminated soil in Egypt

Soil and water in Egypt have become contaminated with multiple pollutants. These contaminants arise from diverse sources, including misuse of fertilizers, industrial effluent discharged into irrigation water, discharge of wastewater in rural areas, and mining activities discharging wet and dry atmospheric deposits and heavy metal contamination. The pollutants can directly affect the quality of air, water, and food and have an adverse effect on human health. About 33% of the cultivated lands in Egypt are salinized due to extreme conditions like high temperatures and aridity. The presence of elevated salt levels in the soil leads to grave consequences for seed germination, plant biochemical processes, development, and reproduction, all of which result in the output of reactive oxygen species and eventually plant death. Despite the possibility of thermal, chemical, or a combination of the two to remediate contaminated soils, their applications are complicated and costly. Some plants, called hyperaccumulators, exhibit the potential to clean up pollutants safely from the soil and water at a low cost. All the technologies used in soil decontamination are called phytoremediation. Some physiological (e.g., phytoextraction, phytostabilization, phytotransformation, rhizofiltration, phytostimulation, phytovolatilization, phytodegradation, and phytodesalination) and molecular parameters (e.g., genes, peptides, and proteins) are involved in heavy metals accumulation of these plants. Although trees are not classified as hyperaccumulators, they have recently proved higher phytoremediation potential than herbaceous plants due to their deeper root system and greater biomass growth. Indeed, this review sheds the light on the application of trees for the phytoremediation of salts and heavy metals in Egypt.

Coupling surfactants with ISCO for remediating of NAPLs: Recent progress and application challenges

Non-aqueous phase liquids (NAPLs) pose a serious risk to the soil-groundwater environment. Coupling surfactants with in situ chemical oxidation (ISCO) technology is a promising strategy, which is attributed to the enhanced desorption and solubilization efficiency of NAPL contaminants. However, the complex interactions among surfactants, oxidation systems, and NAPL contaminants have not been fully revealed. This review provides a comprehensive overview on the development of surfactant-coupled ISCO technology focusing on the effects of surfactants on oxidation systems and NAPLs degradation behavior. Specifically, we discussed the compatibility between surfactants and oxidation systems, including the non-productive consumption of oxidants by surfactants, the role of surfactants in catalytic oxidation systems, and the loss of surfactants solubilization capacity during oxidation process. The effect of surfactants on the degradation behavior of NAPL contaminants is then thoroughly summarized in terms of degradation kinetics, byproducts and degradation mechanisms. This review demonstrates that it is crucial to minimize the negative effects of surfactants on NAPL contaminants oxidation process by fully understanding the interaction between surfactants and oxidation systems, which would promote the successful implementation of surfactant-coupled ISCO technology in remediation of NAPLs-contaminated sites.

Phytotoxicity complements chemical assessment for re-use and re-purposing of refinery wastes for soil amendment purposes after bioremediation

The objective of this study was to assess the suitability of onsite re-use of mature compost for landscaping and tree mulching, produced from the bioremediation of oily sludge from the refinery. Compost samples from the co-composting process were analysed for a range of contaminants, including a human health risk assessment fractionation (HRAF) of the remaining petroleum hydrocarbons, as well as a phytotoxicity test. The chemical characterisation demonstrated that the process removed more than 94% of the original petroleum hydrocarbons from the sludge, and the removal rates were high at 1155 mg/kg/day. The HRAF demonstrated no residual risks, posed by the petroleum hydrocarbons present in the compost to human health if used on-site when compared to the relevant Australian environmental investigation levels (ILs). However, the phytotoxicity assessment demonstrated that the compost was toxic to germinating lettuce. The gap in the literature this study addressed was to provide an estimate of the LD₅₀ and no effect concentration (NEC) for the compost using a standard plant bioassay containing a range of residual (aged) and bioremediated refinery process wastes, including petroleum hydrocarbons. The values estimated for LD₅₀ and NEC were approximately 125 and 43 mg/kg, respectively for compost containing residual petroleum hydrocarbon fractions, filling a gap in the current literature which has limited data on standard toxicity values that can be used in determining and informing commercial remediation strategies and their outcomes with aged sludges. Phytotoxicity was shown to be an important complement to conventional analyses and HRAF data when characterising the sludge, and understanding its potential for re-use. The novelty of the study is that it highlighted a gap in the complementary use of chemical and bioassay analyses for evaluating refinery waste remediation endpoints, which has potential for broader application to other projects.

Recent Strategies for Bioremediation of Emerging Pollutants: A Review for a Green and Sustainable Environment

Environmental pollution brought on by xenobiotics and other related recalcitrant compounds have recently been identified as a major risk to both human health and the natural environment. Due to their toxicity and non-biodegradability, a wide range of pollutants, such as heavy metals, polychlorinated biphenyls, plastics, and various agrochemicals are present in the environment. Bioremediation is an effective cleaning technique for removing toxic waste from polluted environments that is gaining popularity. Various microorganisms, including aerobes and anaerobes, are used in bioremediation to treat contaminated sites. Microorganisms play a major role in bioremediation, given that it is a process in which hazardous wastes and pollutants are eliminated, degraded, detoxified, and immobilized. Pollutants are degraded and converted to less toxic forms, which is a primary goal of bioremediation. Ex situ or in situ bioremediation can be used, depending on a variety of factors, such as cost, pollutant types, and concentration. As a result, a suitable bioremediation method has been chosen. This review focuses on the most recent developments in bioremediation techniques, how microorganisms break down different pollutants, and what the future holds for bioremediation in order to reduce the amount of pollution in the world.

Soil microbiota as game-changers in restoration of degraded lands

Land degradation reduces soil functioning and, consequently, the services that soil provides. Soil hydrological functions are critical to combat soil degradation and promote soil restoration. Soil microorganisms affect soil hydrology, but the role of soil microbiota in forming and sustaining soil is not well explored. Case studies indicate the potential of soil microorganisms as game-changers in restoring soil functions. We review the state of the art of microorganism use in land restoration technology, the groups of microorganisms with the greatest potential for soil restoration, knowledge of the effect of microorganisms on soil physical properties, and proposed strategies for the long-term restoration of degraded lands. We also emphasize the need to advance the emerging research field of biophysical landscape interactions to support soil-plant ecosystem restoration practices.

Hydrocarbon-degrading bacteria in Colombia: systematic review

Petroleum industry activities worldwide have caused pollution and resulted in environmental degradation. Microorganisms with the potential to reduce pollutant levels by degradation processes have been reported, and bacteria are among such organisms. The first study on bacterial degradation in Colombia was published in 1996. The study isolated bacteria belonging to the Pseudomonas genus from hydrocarbon-polluted sediments. Since then, different reports on degrading bacteria have been published. The objective of this systematic review is to identify and analyze all the studies on hydrocarbon-degrading bacteria performed in Colombia. To accomplish this goal, a literature search was conducted. Inclusion and exclusion criteria were applied, and 37 relevant articles were obtained. We found that 2018 was the year with the largest number of publications in Colombia, and most frequently identified bacterial genera were Pseudomonas and Bacillus. Some studies showed that the degradation of hydrocarbons is more efficient when bacterial consortia are used rather than pure cultures. This study provides information about bacteria with the potential to degrade hydrocarbons in Colombia, which in turn will be a source of information for future studies in this field.

Bioremediation of Agriculture Soil Contaminated by Organic Pollutants

Pipeline spills and pollution of the environment by crude oil pose a threat to natural resources, especially soil and water. One such incident occurred on 25 September 2018 in the area of Budrovac (Croatia; 46°00′14.6″ N 17°04′16.8″ E) on agricultural land as a pipeline spill. Bioremediation of the contaminated soil was carried out with organic pollutants using an environmentally safe absorbent Spill-Sorb (Canadian Sphagnum Peat Moss) and a mineral fertilizer—nitrogen. The experiment was conducted in the greenhouse of the Faculty of Agriculture, Croatia, during a six-month (October 2018–April 2019) study. Samples of agricultural soils contaminated with total petroleum hydrocarbons (TPHs) and polycyclic aromatic hydrocarbons (PAHs) were taken after the rupture of the local gas condensate pipeline. The experiment was conducted in five treatments in triplicate: I-control (clean soil); II-100% contaminated soil + organic absorbent + nitrogen; III-100% contaminated soil + organic absorbent; IV-50% clean soil + 50% contaminated soil + organic absorbent + nitrogen; and V-50% clean soil + 50% contaminated soil + organic absorbent. The soil properties studied were pH, organic matter content, carbon and nitrogen content and ratio, and changes in the concentration of potential organic contaminants—TPHs and individual PAHs. The results demonstrated that the mixture of organic absorbent and nitrogen efficiently removed organic pollutants from the contaminated soil within six months. However, the application of Spill-Sorb alone was more effective for the degradation of hydrocarbons. The effectiveness of the absorbent studied was dependent on the concentration of organic pollutants and nitrogen application.

Depth-resolved microbial diversity and functional profiles of trichloroethylene-contaminated soils for Biolog EcoPlate-based biostimulation strategy

This study explores the toxic effect of TCE at different depths of sub-surface soil and underpins microbial community-level suitable carbon (C)-sources that provided directionality to the in situ biostimulation effort via augmentation strategy for effective TCE remediation in soil. The impacts on resident microbial communities and their functional profiles that govern the TCE biodegradation process were identified. Highly contaminated PW01 soil (9 m depth) had severely limited microbial diversity and was enriched in Proteobacteria and Firmicutes. The abundance of TCE degradation-associated genera was observed in all contaminated samples, and the abundance of TCE-degradation-related taxa were positively correlated with soil TCE contamination levels. Community-level metabolic activity associated with the utilization of diverse external C-sources was directly influenced by TCE concentration and soil depth. Multivariate data analysis revealed that the functional genus, TCE concentration, and selected available C substrate uptake capacity correlated in soil samples. Pearson's correlation tests revealed that C sources such as L-arginine, phenylethylamine and γ-hydroxybutyric acid utilization trait exhibited significant positive correlations with chloroalkane and chloroalkene degradation pathway abundance. Ultimately, depth and TCE contamination level-associated soil microbiota and their most preferred C-source understanding could add to facilitate effective biostimulation via external nutrient amendment for efficient in situ TCE degradation.

Oil spills: impacts and perspectives of treatment technologies with focus on the use of green surfactants

Oil spills into the oceans cause irreparable damage to marine life and harms the coastal population of the affected areas. The main measures to be taken in response to an oil spill are to reduce the impact on marine life, prevent oil from reaching the shore through its recovery, and accelerate the degradation of unrecovered oil. Any environmental damage can be reduced if the spilled oil is removed from the water quickly and efficiently. Therefore, it is essential to know the treatment strategies for spilled oils. Several technologies are currently available, including booms, skimmers, in situ burning, use of adsorbents, dispersants/surfactants, and bioremediation. The selection of the type of treatment will depend not only on the effectiveness of the technique, but mainly on the type of oil, amount spilled, location, weather, and sea conditions. In this review, the characteristics of oil spills, their origin, destination, and impacts caused, including major accidents around the world, are initially addressed. Then, the main physical, chemical, and biological treatment technologies are presented, describing their advances, advantages, and drawbacks, with a focus on the use of green surfactants. These agents will be described in detail, showing the evolution of research, recent studies, patents, and commercialized products. Finally, the challenges that remain due to spills, the necessary actions, and the prospects for the development of existing treatment technologies are discussed, which must be linked to the use of combined techniques.

Using prototypes to enable development of commercially viable field scale contaminated site remediation processes

Soil structure was damaged from solvents and localised heating after a large fire which had potential to limit bioremediation of an industrial site. Laboratory prototypes (biopile, bioflushing, bioreactor, slurry reactor) for treating the site contamination were developed. After successful laboratory testing (96% removal of main contaminant, phenol), the bioflushing prototype was then applied in the field. Field prototype removed 95% phenol using a small scale 2000 L bioreactor. Field trial was then scaled to commercial clean-up. Intensive soil grid sampling after 600 days treatment revealed hotspots of solvents remaining as well as the heterogeneity in the subsurface, however overall concentrations were substantially decreased below the initial assessment. The process decreased initial soil phenol concentrations of approximately 500 mg/kg (pre-treatment area average) to 75 mg/kg across the most contaminated areas. Phenol toxicity increased with depth and is linked to increasing oxygen deficit. The study demonstrated the prototyping process enabling site clean-up and scaling for bioremediation at the industrial site, provided certainty for site owner on treatment elements and achieving improved environmental and commercial outcomes.

Elaboration of a Phytoremediation Strategy for Successful and Sustainable Rehabilitation of Disturbed and Degraded Land

Humans are dependent upon soil which supplies food, fuel, chemicals, medicine, sequesters pollutants, purifies and conveys water, and supports the built environment. In short, we need soil, but it has little or no need of us. Agriculture, mining, urbanization and other human activities result in temporary land-use and once complete, used and degraded land should be rehabilitated and restored to minimize loss of soil carbon. It is generally accepted that the most effective strategy is phyto-remediation. Typically, phytoremediation involves re-invigoration of soil fertility, physicochemical properties, and its microbiome to facilitate establishment of appropriate climax cover vegetation. A myco-phytoremediation technology called Fungcoal was developed in South Africa to achieve these outcomes for land disturbed by coal mining. Here we outline the contemporary and expanded rationale that underpins Fungcoal, which relies on in situ bio-conversion of carbonaceous waste coal or discard, in order to explore the probable origin of humic substances (HS) and soil organic matter (SOM). To achieve this, microbial processing of low-grade coal and discard, including bio-liquefaction and bio-conversion, is examined in some detail. The significance, origin, structure, and mode of action of coal-derived humics are recounted to emphasize the dynamic equilibrium, that is, humification and the derivation of soil organic matter (SOM). The contribution of plant exudate, extracellular vesicles (EV), extra polymeric substances (EPS), and other small molecules as components of the dynamic equilibrium that sustains SOM is highlighted. Arbuscular mycorrhizal fungi (AMF), saprophytic ectomycorrhizal fungi (EMF), and plant growth promoting rhizobacteria (PGPR) are considered essential microbial biocatalysts that provide mutualistic support to sustain plant growth following soil reclamation and restoration. Finally, we posit that de novo synthesis of SOM is by specialized microbial consortia (or ‘humifiers’) which use molecular components from the root metabolome; and, that combinations of functional biocatalyst act to re-establish and maintain the soil dynamic. It is concluded that a bio-scaffold is necessary for functional phytoremediation including maintenance of the SOM dynamic and overall biogeochemistry of organic carbon in the global ecosystem

Physicochemical Upgrading of a Biodetergent for Application in the Industrial Energy Sector

In the industries across the petroleum chain and those involved in energy generation, the use of petroderivatives as fuel oils is common. To clean parts, equipment and environments contaminated by hydrocarbons, they use expensive, toxic products, bringing risks to the environment as well as to workers’ health. Thus, the aim of this study was to check the stability of a biodetergent prepared using atoxic substances for large-scale production and industrial energy sector application. The relationship between volume (4 to 10 L) and stirring time (5 to 10 min) of the formulation at 3200 rpm and 80 °C was evaluated. The hydrophilic lipophilic balance (HLB), long-term stability (365 days), toxicity and efficiency of low-sulfur, viscous fuel oil removal from metal pieces and floors were investigated. The interaction among operating conditions was shown to influence the features of the product, which achieved approximately 100% stability after a stirring time of 7 min. The emulsion HBL index varied between 4.3 and 11.0. The biodetergent maintained its physicochemical properties during its 365 days of storage and showed high efficiency, removing 100% of the OCB1 impregnated on the metallic surfaces and floors tested. The formulation showed reliability in scale up when submitted to the study of physicochemical factors in the productive process, and safe application, by reducing risks for workers’ health and environment.

From landfills to landscapes-Nature-based solutions for water management taking into account legacy contamination

Nature-based solutions (NBS) can be used in combination with the reopening of piped rivers to support area development. In certain cases, piped rivers can run through disused landfills. This presents a complicating factor because landfills provide the possibility for river water to be contaminated by waste. In Skien municipality, close to Oslo, Norway, NBS are being considered as part of a potential reopening of the Kjørbekk stream. A 4-km stretch of the stream is contained in an aging pipe infrastructure that is buried under two disused landfills. The pipe infrastructure does not have the physical capacity to cope with an increase in precipitation brought about by current climate change, and in certain areas, the pipe has started to leak. This means that surface water runoff that cannot be accommodated by the pipe, as well as water that leaks from the pipe, can become contaminated by the waste in the disused landfill. Furthermore, the water can be transported with the stream course to the final recipient, taking the contamination with it. Reopening the stream and providing new water pathways can alleviate these problems, but it must be carried out so that contamination is not allowed to spread. This case study reveals how certain NBS that focus on reducing the amount of water in contact with pollutants, reducing the amount of particle spreading, remediating contaminated water, and remediating contaminated soil could be implemented at the site and function as a catalyst for an incremental city development. Integr Environ Assess Manag 2022;18:99-107. © 2021 The Authors. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).

Application of Green Surfactants in the Remediation of Soils Contaminated by Hydrocarbons

Among the innovative technologies utilized for the treatment of contaminated soils, the use of green surfactants appears to be a biocompatible, efficient, and attractive alternative, since the cleaning processes that normally use synthetic surfactants as additives cause other problems due to toxicity and the accumulation of by-products. Three green surfactants, i.e., two biobased (biobased 1 and biobased 2) surfactants produced by chemical synthesis and a microbial surfactant produced from the yeast Starmerella bombicola ATCC 22214, were used as soil remediation agents and compared to a synthetic surfactant (Tween 80). The three surfactants were tested for their ability to emulsify, disperse, and remove different hydrophobic contaminants. The biosurfactant, which was able to reduce the water surface tension to 32.30 mN/m at a critical micelle concentration of 0.65 g/L, was then used to prepare a commercial formulation that showed lower toxicity to the tested environmental bioindicators and lower dispersion capacity than the biobased surfactants. All the green surfactants showed great emulsification capacity, especially against motor oil and petroleum. Therefore, their potential to remove motor oil adsorbed on different types of soils (sandy, silty, and clay soil and beach sand) was investigated either in kinetic (flasks) or static (packed columns) experiments. The commercial biosurfactant formulation showed excellent effectiveness in removing motor oil, especially from contaminated sandy soil (80.0 ± 0.46%) and beach sand (65.0 ± 0.14%) under static conditions, while, in the kinetic experiments, the commercial biosurfactant and the biobased 2 surfactant were able to remove motor oil from all the contaminated soils tested more effectively than the biobased 1 surfactant. Finally, the S. bombicola commercial biosurfactant was evaluated as a soil bioremediation agent. In degradation experiments carried out on motor oil-contaminated soils enriched with sugarcane molasses, oil degradation yield in the sandy soil reached almost 90% after 60 days in the presence of the commercial biosurfactant, while it did not exceed 20% in the presence of only S. bombicola cells. These results promise to contribute to the development of green technologies for the treatment of hydrophobic pollutants with economic gains for the oil industries.

Exploitation of extracellular organic matter from Micrococcus luteus to enhance ex situ bioremediation of soils polluted with used lubricants

Chronic pollution by used lubricant oils (ULOs) poses a serious challenge to the environment. Under stress conditions, microorganisms, including potential degraders, can enter a viable but non-culturable (VBNC) state, complicating the bioremediation of ULO-polluted areas. Resuscitation-promoting factors (Rpfs) can reverse this transition and/or enhance the biodegradation performance of both native and augmented strains. Here, Rpf-containing extracellular organic matter (EOM) from Micrococcus luteus was used to enhance the ex situ ULO removal in biostimulated and bioaugmented (with Rhodococcus qingshengii KAG C, R. erythropolis PR4) soils. ULO bioconversion, microbial activity, and CFUs were significantly higher in EOM-treated soils compared to corresponding control soils. After 60 days, the initial ULO concentration (52,500 mg kg^-1) was reduced by 37% and 45% with EOM-supplemented biostimulation and bioaugmentation, respectively. Based on high-throughput 16S rRNA analysis, the enhancement was attributable both to the reactivation of EOM-responsive hydrocarbonoclastic bacterial genera (e.g., Pseudomonas, Comamonas, Stenotrophomonas, Gordonia) and to the long-term positive effect of EOM on the degradative efficacy of the introduced rhodococci. Ecotoxicological responses revealed that reduced ULO concentration did not correlate with decreased soil toxicity. Our findings provide an insight into the applicability of EOM in bioremediation and its effects on the soil microbial activity and community composition.

Effects of Abiotic Stress on Soil Microbiome

Rhizospheric organisms have a unique manner of existence since many factors can influence the shape of the microbiome. As we all know, harnessing the interaction between soil microbes and plants is critical for sustainable agriculture and ecosystems. We can achieve sustainable agricultural practice by incorporating plant-microbiome interaction as a positive technology. The contribution of this interaction has piqued the interest of experts, who plan to do more research using beneficial microorganism in order to accomplish this vision. Plants engage in a wide range of interrelationship with soil microorganism, spanning the entire spectrum of ecological potential which can be mutualistic, commensal, neutral, exploitative, or competitive. Mutualistic microorganism found in plant-associated microbial communities assist their host in a number of ways. Many studies have demonstrated that the soil microbiome may provide significant advantages to the host plant. However, various soil conditions (pH, temperature, oxygen, physics-chemistry and moisture), soil environments (drought, submergence, metal toxicity and salinity), plant types/genotype, and agricultural practices may result in distinct microbial composition and characteristics, as well as its mechanism to promote plant development and defence against all these stressors. In this paper, we provide an in-depth overview of how the above factors are able to affect the soil microbial structure and communities and change above and below ground interactions. Future prospects will also be discussed.

The Processing of Calcium Rich Agricultural and Industrial Waste for Recovery of Calcium Carbonate and Calcium Oxide and Their Application for Environmental Cleanup: A Review

Every year a million tonnes of calcium rich agro and industrial waste are generated around the whole globe. These calcium rich waste like finger citron, shells of cockle, mussel, oysters etc., and egg shell are biological sources which have various organic compounds. The inorganic calcium rich waste includes gypsum, dolomite, sludge etc., which are produced in surplus amount globally. Most of these by-products are mainly dumped, while few are used for land-filling purposes which leads to the pollution. These agro and industrial by-products could be processed for the recovery of calcium carbonate and calcium oxide particles by physical and chemical method. The recovery of calcium carbonate and calcium oxide particles from such by products make them biocompatible. Moreover, the products are economical due to their synthesis from waste materials. Here, in this current review work we have emphasized on the all the calcium rich agro industries and industrial by products, especially their processing by various approaches. Further, we have also focused on the properties and application of such calcium carbonate and oxide particles for the remediation of organic and inorganic pollutants from the environments. The recovery of such particles from these byproducts is considered not only economical and eco-friendly but it also minimizes the pollution present in the form of solid waste.

Bibliometric Analysis of Hydrocarbon Bioremediation in Cold Regions and a Review on Enhanced Soil Bioremediation

Simple Summary

Anthropogenic activities in cold regions require petroleum oils to support various purposes. With the increased demand of petroleum, accidental oil spills are generated during transportation or refuelling processes. Soil is one of the major victims in petroleum pollution, hence studies have been devoted to find solutions to remove these petroleum hydrocarbons. However, the remote and low-temperature conditions in cold regions hindered the implementation of physical and chemical removal treatments. On the other hand, biological treatments in general have been proposed as an innovative approach to attenuate these hydrocarbon pollutants in soils. To understand the relevancy of biological treatments for cold regions specifically, bibliometric analysis has been applied to systematically analyse studies focused on hydrocarbon removal treatment in a biological way. To expedite the understanding of this analysis, we have summarised these biological treatments and suggested other biological applications in the context of cold conditions.

Abstract

The increased usage of petroleum oils in cold regions has led to widespread oil pollutants in soils. The harsh environmental conditions in cold environments allow the persistence of these oil pollutants in soils for more than 20 years, raising adverse threats to the ecosystem. Microbial bioremediation was proposed and employed as a cost-effective tool to remediate petroleum hydrocarbons present in soils without significantly posing harmful side effects. However, the conventional hydrocarbon bioremediation requires a longer time to achieve the clean-up standard due to various environmental factors in cold regions. Recent biotechnological improvements using biostimulation and/or bioaugmentation strategies are reported and implemented to enhance the hydrocarbon removal efficiency under cold conditions. Thus, this review focuses on the enhanced bioremediation for hydrocarbon-polluted soils in cold regions, highlighting in situ and ex situ approaches and few potential enhancements via the exploitation of molecular and microbial technology in response to the cold condition. The bibliometric analysis of the hydrocarbon bioremediation research in cold regions is also presented.