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Liu J, Tang Y, Bao J, Wang H, Peng F, Tan P, Chu G, Liu S. A Stronger Rhizosphere Impact on the Fungal Communities Compared to the Bacterial Communities in Pecan Plantations. Front Microbiol 2022; 13:899801. [PMID: 35847123 PMCID: PMC9279573 DOI: 10.3389/fmicb.2022.899801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2022] [Accepted: 06/02/2022] [Indexed: 11/13/2022] Open
Abstract
Understanding microbial communities associated with bulk and rhizosphere soils will benefit the maintenance of forest health and productivity and the sustainable development of forest ecosystems. Based on MiSeq sequencing, we explored the differences between the bulk soil and the rhizosphere soil on bacterial and fungal communities of pecan plantation. Results suggested that rhizosphere-associated fungal rather than bacterial community structures differed from bulk soil, and rhizosphere soil had lower fungal diversity than bulk soil. Actinobacteria and Cantharellales were the bacterial and fungal biomarkers of the rhizosphere soil of pecan plantation, respectively. In addition, Pleosporales, which are mainly involved in saprophylaxis and plant pathogenic processes, was identified as one of the most important fungal biomarkers for the bulk soil, and the FunGuild predicted a higher relative abundance of pathogenic fungi in bulk soil compared to rhizosphere soil. The pH, ammonium nitrogen (NH4+-N), nitrate nitrogen (NO3--N), and total carbon (TC) contents drove microbial community structure and composition. The bacterial network was simpler in the rhizosphere soil than in the bulk soil. However, fungi showed the opposite network pattern. Keystone species in bacterial and fungal networks were mostly involved in nutrient cycling and the C cycling, and were found to be enriched in the rhizosphere soil. Overall, in terms of bacterial and fungal communities, the rhizosphere soil behaves more healthily than the bulk soil and has a higher potential for nutrient cycling.
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Affiliation(s)
- Junping Liu
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, China
| | - Yujie Tang
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, China
| | - Jiashu Bao
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, China
| | - Hankun Wang
- College of Biology and the Environment, Nanjing Forestry University, Nanjing, China
| | - Fangren Peng
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, China
- *Correspondence: Fangren Peng
| | - Pengpeng Tan
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, China
| | - Guolin Chu
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, China
| | - Shuai Liu
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, China
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Vahdati K, Sarikhani S, Arab MM, Leslie CA, Dandekar AM, Aletà N, Bielsa B, Gradziel TM, Montesinos Á, Rubio-Cabetas MJ, Sideli GM, Serdar Ü, Akyüz B, Beccaro GL, Donno D, Rovira M, Ferguson L, Akbari M, Sheikhi A, Sestras AF, Kafkas S, Paizila A, Roozban MR, Kaur A, Panta S, Zhang L, Sestras RE, Mehlenbacher SA. Advances in Rootstock Breeding of Nut Trees: Objectives and Strategies. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10112234. [PMID: 34834597 PMCID: PMC8623031 DOI: 10.3390/plants10112234] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2021] [Revised: 10/06/2021] [Accepted: 10/15/2021] [Indexed: 05/31/2023]
Abstract
The production and consumption of nuts are increasing in the world due to strong economic returns and the nutritional value of their products. With the increasing role and importance given to nuts (i.e., walnuts, hazelnut, pistachio, pecan, almond) in a balanced and healthy diet and their benefits to human health, breeding of the nuts species has also been stepped up. Most recent fruit breeding programs have focused on scion genetic improvement. However, the use of locally adapted grafted rootstocks also enhanced the productivity and quality of tree fruit crops. Grafting is an ancient horticultural practice used in nut crops to manipulate scion phenotype and productivity and overcome biotic and abiotic stresses. There are complex rootstock breeding objectives and physiological and molecular aspects of rootstock-scion interactions in nut crops. In this review, we provide an overview of these, considering the mechanisms involved in nutrient and water uptake, regulation of phytohormones, and rootstock influences on the scion molecular processes, including long-distance gene silencing and trans-grafting. Understanding the mechanisms resulting from rootstock × scion × environmental interactions will contribute to developing new rootstocks with resilience in the face of climate change, but also of the multitude of diseases and pests.
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Affiliation(s)
- Kourosh Vahdati
- Department of Horticulture, College of Aburaihan, University of Tehran, Tehran 3391653755, Iran; (S.S.); (M.M.A.); (M.R.R.)
| | - Saadat Sarikhani
- Department of Horticulture, College of Aburaihan, University of Tehran, Tehran 3391653755, Iran; (S.S.); (M.M.A.); (M.R.R.)
| | - Mohammad Mehdi Arab
- Department of Horticulture, College of Aburaihan, University of Tehran, Tehran 3391653755, Iran; (S.S.); (M.M.A.); (M.R.R.)
| | - Charles A. Leslie
- Department of Plant Sciences, University of California Davis, One Shields, Avenue, Davis, CA 95616, USA; (C.A.L.); (A.M.D.); (T.M.G.); (G.M.S.); (L.F.)
| | - Abhaya M. Dandekar
- Department of Plant Sciences, University of California Davis, One Shields, Avenue, Davis, CA 95616, USA; (C.A.L.); (A.M.D.); (T.M.G.); (G.M.S.); (L.F.)
| | - Neus Aletà
- Institut de Recerca i Tecnologia Agroalimentàries, IRTA Fruit Production, Torre Marimon, 08140 Caldes de Montbui, Spain;
| | - Beatriz Bielsa
- Unidad de Hortofruticultura, Centro de Investigación y Tecnología Agroalimentaria de Aragón, Instituto Agroalimentario de Aragón-IA2 (CITA-Universidad de Zaragoza), Av. Montañana 930, 50059 Zaragoza, Spain; (B.B.); (Á.M.); (M.J.R.-C.)
| | - Thomas M. Gradziel
- Department of Plant Sciences, University of California Davis, One Shields, Avenue, Davis, CA 95616, USA; (C.A.L.); (A.M.D.); (T.M.G.); (G.M.S.); (L.F.)
| | - Álvaro Montesinos
- Unidad de Hortofruticultura, Centro de Investigación y Tecnología Agroalimentaria de Aragón, Instituto Agroalimentario de Aragón-IA2 (CITA-Universidad de Zaragoza), Av. Montañana 930, 50059 Zaragoza, Spain; (B.B.); (Á.M.); (M.J.R.-C.)
| | - María José Rubio-Cabetas
- Unidad de Hortofruticultura, Centro de Investigación y Tecnología Agroalimentaria de Aragón, Instituto Agroalimentario de Aragón-IA2 (CITA-Universidad de Zaragoza), Av. Montañana 930, 50059 Zaragoza, Spain; (B.B.); (Á.M.); (M.J.R.-C.)
- Instituto Agroalimentario de Aragón–IA2 (CITA-Universidad de Zaragoza), 50059 Zaragoza, Spain
| | - Gina M. Sideli
- Department of Plant Sciences, University of California Davis, One Shields, Avenue, Davis, CA 95616, USA; (C.A.L.); (A.M.D.); (T.M.G.); (G.M.S.); (L.F.)
| | - Ümit Serdar
- Department of Horticulture, Faculty of Agriculture, Ondokuz Mayıs University, Samsun 55139, Turkey; (Ü.S.); (B.A.)
| | - Burak Akyüz
- Department of Horticulture, Faculty of Agriculture, Ondokuz Mayıs University, Samsun 55139, Turkey; (Ü.S.); (B.A.)
| | - Gabriele Loris Beccaro
- Department of Agricultural, Forest and Food Sciences, University of Torino, 10124 Torino, Italy; (G.L.B.); (D.D.)
| | - Dario Donno
- Department of Agricultural, Forest and Food Sciences, University of Torino, 10124 Torino, Italy; (G.L.B.); (D.D.)
| | - Mercè Rovira
- Institut de Recerca i Tecnologia Agroalimentàries, IRTA Fruit Production, Mas Bové, Ctra. Reus-El Morell, Km. 3.8, 43120 Constantí, Spain;
| | - Louise Ferguson
- Department of Plant Sciences, University of California Davis, One Shields, Avenue, Davis, CA 95616, USA; (C.A.L.); (A.M.D.); (T.M.G.); (G.M.S.); (L.F.)
| | | | - Abdollatif Sheikhi
- Department of Horticultural Sciences, College of Agriculture, Vali-e-Asr University of Rafsanjan, Rafsanjan 7718897111, Iran;
| | - Adriana F. Sestras
- Faculty of Horticulture, University of Agricultural Sciences and Veterinary Medicine, 400372 Cluj-Napoca, Romania;
| | - Salih Kafkas
- Department of Horticulture, Faculty of Agriculture, Cukurova University, Adana 01380, Turkey; (S.K.); (A.P.)
| | - Aibibula Paizila
- Department of Horticulture, Faculty of Agriculture, Cukurova University, Adana 01380, Turkey; (S.K.); (A.P.)
| | - Mahmoud Reza Roozban
- Department of Horticulture, College of Aburaihan, University of Tehran, Tehran 3391653755, Iran; (S.S.); (M.M.A.); (M.R.R.)
| | - Amandeep Kaur
- Department of Horticulture and Landscape Architecture, Oklahoma State University, Stillwater, OK 74078, USA; (A.K.); (S.P.); (L.Z.)
| | - Srijana Panta
- Department of Horticulture and Landscape Architecture, Oklahoma State University, Stillwater, OK 74078, USA; (A.K.); (S.P.); (L.Z.)
| | - Lu Zhang
- Department of Horticulture and Landscape Architecture, Oklahoma State University, Stillwater, OK 74078, USA; (A.K.); (S.P.); (L.Z.)
| | - Radu E. Sestras
- Faculty of Horticulture, University of Agricultural Sciences and Veterinary Medicine, 400372 Cluj-Napoca, Romania;
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