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Karra S, Mehana M, Lubbers N, Chen Y, Diaw A, Santos JE, Pachalieva A, Pavel RS, Haack JR, McKerns M, Junghans C, Kang Q, Livescu D, Germann TC, Viswanathan HS. Predictive scale-bridging simulations through active learning. Sci Rep 2023; 13:16262. [PMID: 37758757 PMCID: PMC10533863 DOI: 10.1038/s41598-023-42823-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 09/15/2023] [Indexed: 09/29/2023] Open
Abstract
Throughout computational science, there is a growing need to utilize the continual improvements in raw computational horsepower to achieve greater physical fidelity through scale-bridging over brute-force increases in the number of mesh elements. For instance, quantitative predictions of transport in nanoporous media, critical to hydrocarbon extraction from tight shale formations, are impossible without accounting for molecular-level interactions. Similarly, inertial confinement fusion simulations rely on numerical diffusion to simulate molecular effects such as non-local transport and mixing without truly accounting for molecular interactions. With these two disparate applications in mind, we develop a novel capability which uses an active learning approach to optimize the use of local fine-scale simulations for informing coarse-scale hydrodynamics. Our approach addresses three challenges: forecasting continuum coarse-scale trajectory to speculatively execute new fine-scale molecular dynamics calculations, dynamically updating coarse-scale from fine-scale calculations, and quantifying uncertainty in neural network models.
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Affiliation(s)
- Satish Karra
- Energy and Natural Resources Security Group, Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99354, USA
| | - Mohamed Mehana
- Energy and Natural Resources Security Group, Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA.
| | - Nicholas Lubbers
- Information Sciences Group, Computer, Computational and Statistical Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Yu Chen
- Department of Mechanics and Aerospace Engineering, Southern University of Science and Technology, Shenzen, 518055, China
| | - Abdourahmane Diaw
- Burning Plasma Foundations Section, Fusion Energy Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, TN, 37831, USA
| | - Javier E Santos
- Energy and Natural Resources Security Group, Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Aleksandra Pachalieva
- Energy and Natural Resources Security Group, Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Robert S Pavel
- Applied Computer Science Group, Computer, Computational and Statistical Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Jeffrey R Haack
- Computational Physics and Methods, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Michael McKerns
- Computational Physics and Methods, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Christoph Junghans
- Applied Computer Science Group, Computer, Computational and Statistical Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Qinjun Kang
- Energy and Natural Resources Security Group, Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Daniel Livescu
- Computational Physics and Methods, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Timothy C Germann
- Physics and Chemistry of Materials Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Hari S Viswanathan
- Energy and Natural Resources Security Group, Earth and Environmental Sciences Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
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Befort BJ, DeFever RS, Tow GM, Dowling AW, Maginn EJ. Machine Learning Directed Optimization of Classical Molecular Modeling Force Fields. J Chem Inf Model 2021; 61:4400-4414. [PMID: 34402301 DOI: 10.1021/acs.jcim.1c00448] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Accurate force fields are necessary for predictive molecular simulations. However, developing force fields that accurately reproduce experimental properties is challenging. Here, we present a machine learning directed, multiobjective optimization workflow for force field parametrization that evaluates millions of prospective force field parameter sets while requiring only a small fraction of them to be tested with molecular simulations. We demonstrate the generality of the approach and identify multiple low-error parameter sets for two distinct test cases: simulations of hydrofluorocarbon (HFC) vapor-liquid equilibrium (VLE) and an ammonium perchlorate (AP) crystal phase. We discuss the challenges and implications of our force field optimization workflow.
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Affiliation(s)
- Bridgette J Befort
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Ryan S DeFever
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Garrett M Tow
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Alexander W Dowling
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Edward J Maginn
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, United States
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