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Sukumarran D, Hasikin K, Khairuddin ASM, Ngui R, Sulaiman WYW, Vythilingam I, Divis PCS. An optimised YOLOv4 deep learning model for efficient malarial cell detection in thin blood smear images. Parasit Vectors 2024; 17:188. [PMID: 38627870 PMCID: PMC11022477 DOI: 10.1186/s13071-024-06215-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Accepted: 02/25/2024] [Indexed: 04/19/2024] Open
Abstract
BACKGROUND Malaria is a serious public health concern worldwide. Early and accurate diagnosis is essential for controlling the disease's spread and avoiding severe health complications. Manual examination of blood smear samples by skilled technicians is a time-consuming aspect of the conventional malaria diagnosis toolbox. Malaria persists in many parts of the world, emphasising the urgent need for sophisticated and automated diagnostic instruments to expedite the identification of infected cells, thereby facilitating timely treatment and reducing the risk of disease transmission. This study aims to introduce a more lightweight and quicker model-but with improved accuracy-for diagnosing malaria using a YOLOv4 (You Only Look Once v. 4) deep learning object detector. METHODS The YOLOv4 model is modified using direct layer pruning and backbone replacement. The primary objective of layer pruning is the removal and individual analysis of residual blocks within the C3, C4 and C5 (C3-C5) Res-block bodies of the backbone architecture's C3-C5 Res-block bodies. The CSP-DarkNet53 backbone is simultaneously replaced for enhanced feature extraction with a shallower ResNet50 network. The performance metrics of the models are compared and analysed. RESULTS The modified models outperform the original YOLOv4 model. The YOLOv4-RC3_4 model with residual blocks pruned from the C3 and C4 Res-block body achieves the highest mean accuracy precision (mAP) of 90.70%. This mAP is > 9% higher than that of the original model, saving approximately 22% of the billion floating point operations (B-FLOPS) and 23 MB in size. The findings indicate that the YOLOv4-RC3_4 model also performs better, with an increase of 9.27% in detecting the infected cells upon pruning the redundant layers from the C3 Res-block bodies of the CSP-DarkeNet53 backbone. CONCLUSIONS The results of this study highlight the use of the YOLOv4 model for detecting infected red blood cells. Pruning the residual blocks from the Res-block bodies helps to determine which Res-block bodies contribute the most and least, respectively, to the model's performance. Our method has the potential to revolutionise malaria diagnosis and pave the way for novel deep learning-based bioinformatics solutions. Developing an effective and automated process for diagnosing malaria will considerably contribute to global efforts to combat this debilitating disease. We have shown that removing undesirable residual blocks can reduce the size of the model and its computational complexity without compromising its precision.
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Affiliation(s)
- Dhevisha Sukumarran
- Department of Biomedical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Khairunnisa Hasikin
- Department of Biomedical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur, Malaysia.
- Center of Intelligent Systems for Emerging Technology (CISET), Faculty of Engineering, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.
| | - Anis Salwa Mohd Khairuddin
- Department of Electrical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur, Malaysia
- Malaria Research Centre, Faculty of Medicine and Health Sciences, Universiti Malaysia Sarawak, Kota Samarahan, Sarawak, Malaysia
| | - Romano Ngui
- Department of Para-Clinical Sciences, Faculty of Medicine and Health Sciences, Universiti Malaysia Sarawak, Sarawak, Malaysia.
| | | | - Indra Vythilingam
- Department of Parasitology, Faculty of Medicine, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Paul Cliff Simon Divis
- Malaria Research Centre, Faculty of Medicine and Health Sciences, Universiti Malaysia Sarawak, Kota Samarahan, Sarawak, Malaysia
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Lv M, Su WH. YOLOV5-CBAM-C3TR: an optimized model based on transformer module and attention mechanism for apple leaf disease detection. FRONTIERS IN PLANT SCIENCE 2024; 14:1323301. [PMID: 38288410 PMCID: PMC10822903 DOI: 10.3389/fpls.2023.1323301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Accepted: 12/26/2023] [Indexed: 01/31/2024]
Abstract
Apple trees face various challenges during cultivation. Apple leaves, as the key part of the apple tree for photosynthesis, occupy most of the area of the tree. Diseases of the leaves can hinder the healthy growth of trees and cause huge economic losses to fruit growers. The prerequisite for precise control of apple leaf diseases is the timely and accurate detection of different diseases on apple leaves. Traditional methods relying on manual detection have problems such as limited accuracy and slow speed. In this study, both the attention mechanism and the module containing the transformer encoder were innovatively introduced into YOLOV5, resulting in YOLOV5-CBAM-C3TR for apple leaf disease detection. The datasets used in this experiment were uniformly RGB images. To better evaluate the effectiveness of YOLOV5-CBAM-C3TR, the model was compared with different target detection models such as SSD, YOLOV3, YOLOV4, and YOLOV5. The results showed that YOLOV5-CBAM-C3TR achieved mAP@0.5, precision, and recall of 73.4%, 70.9%, and 69.5% for three apple leaf diseases including Alternaria blotch, Grey spot, and Rust. Compared with the original model YOLOV5, the mAP 0.5increased by 8.25% with a small change in the number of parameters. In addition, YOLOV5-CBAM-C3TR can achieve an average accuracy of 92.4% in detecting 208 randomly selected apple leaf disease samples. Notably, YOLOV5-CBAM-C3TR achieved 93.1% and 89.6% accuracy in detecting two very similar diseases including Alternaria Blotch and Grey Spot, respectively. The YOLOV5-CBAM-C3TR model proposed in this paper has been applied to the detection of apple leaf diseases for the first time, and also showed strong recognition ability in identifying similar diseases, which is expected to promote the further development of disease detection technology.
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Affiliation(s)
| | - Wen-Hao Su
- College of Engineering, China Agricultural University, Beijing, China
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Guo Z, Jayan H. Fast Nondestructive Detection Technology and Equipment for Food Quality and Safety. Foods 2023; 12:3744. [PMID: 37893637 PMCID: PMC10606285 DOI: 10.3390/foods12203744] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Accepted: 10/08/2023] [Indexed: 10/29/2023] Open
Abstract
Fast nondestructive detection technology in food quality and safety evaluation is a powerful support tool that fosters informatization and intelligence in the food industry, characterized by its rapid processing, convenient operation, and seamless online inspection [...].
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Affiliation(s)
- Zhiming Guo
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, China
- International Joint Research Laboratory of Intelligent Agriculture and Agri-Products Processing, Jiangsu University, Zhenjiang 212013, China
- China Light Industry Key Laboratory of Food Intelligent Detection & Processing, Jiangsu University, Zhenjiang 212013, China
| | - Heera Jayan
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, China
- International Joint Research Laboratory of Intelligent Agriculture and Agri-Products Processing, Jiangsu University, Zhenjiang 212013, China
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Ji W, Wang J, Xu B, Zhang T. Apple Grading Based on Multi-Dimensional View Processing and Deep Learning. Foods 2023; 12:foods12112117. [PMID: 37297365 DOI: 10.3390/foods12112117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 05/19/2023] [Accepted: 05/23/2023] [Indexed: 06/12/2023] Open
Abstract
This research proposes an apple quality grading approach based on multi-dimensional view information processing using YOLOv5s network as the framework to rapidly and accurately perform the apple quality grading task. The Retinex algorithm is employed initially to finish picture improvement. Then, the YOLOv5s model, which is improved by adding ODConv dynamic convolution and GSConv convolution and VoVGSCSP lightweight backbone, is used to simultaneously complete the detection of apple surface defects and the identification and screening of fruit stem information, retaining only the side information of the apple multi-view. After that, the YOLOv5s network model-based approach for assessing apple quality is then developed. The introduction of the Swin Transformer module to the Resnet18 backbone increases the grading accuracy and brings the judgment closer to the global optimal solution. In this study, datasets were made using a total of 1244 apple images, each containing 8 to 10 apples. Training sets and test sets were randomly created and divided into 3:1. The experimental results demonstrated that in the multi-dimensional view information processing, the recognition accuracy of the designed fruit stem and surface defect recognition model reached 96.56% after 150 iteration training, the loss function value decreased to 0.03, the model parameter was only 6.78 M, and the detection rate was 32 frames/s. After 150 iteration training, the average grading accuracy of the quality grading model reached 94.46%, the loss function value decreased to 0.05, and the model parameter was only 3.78 M. The test findings indicate that the proposed strategy has a good application prospect in the apple grading task.
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Affiliation(s)
- Wei Ji
- School of Electrical and Information Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Juncheng Wang
- School of Electrical and Information Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Bo Xu
- School of Electrical and Information Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Tong Zhang
- School of Electrical and Information Engineering, Jiangsu University, Zhenjiang 212013, China
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Wu X, Deng H, Wang Q, Lei L, Gao Y, Hao G. Meta-learning shows great potential in plant disease recognition under few available samples. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023; 114:767-782. [PMID: 36883481 DOI: 10.1111/tpj.16176] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Revised: 02/15/2023] [Accepted: 02/23/2023] [Indexed: 05/27/2023]
Abstract
Plant diseases worsen the threat of food shortage with the growing global population, and disease recognition is the basis for the effective prevention and control of plant diseases. Deep learning has made significant breakthroughs in the field of plant disease recognition. Compared with traditional deep learning, meta-learning can still maintain more than 90% accuracy in disease recognition with small samples. However, there is no comprehensive review on the application of meta-learning in plant disease recognition. Here, we mainly summarize the functions, advantages, and limitations of meta-learning research methods and their applications for plant disease recognition with a few data scenarios. Finally, we outline several research avenues for utilizing current and future meta-learning in plant science. This review may help plant science researchers obtain faster, more accurate, and more credible solutions through deep learning with fewer labeled samples.
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Affiliation(s)
- Xue Wu
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, State Key Laboratory of Public Big Data, Guizhou University, Guiyang, 550025, Guizhou, China
| | - Hongyu Deng
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, State Key Laboratory of Public Big Data, Guizhou University, Guiyang, 550025, Guizhou, China
| | - Qi Wang
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, State Key Laboratory of Public Big Data, Guizhou University, Guiyang, 550025, Guizhou, China
| | - Liang Lei
- School of Physics & Optoelectronic Engineering, Guangdong University of Technology, Guangzhou, 550000, Guangzhou, China
| | - Yangyang Gao
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, State Key Laboratory of Public Big Data, Guizhou University, Guiyang, 550025, Guizhou, China
| | - Gefei Hao
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, State Key Laboratory of Public Big Data, Guizhou University, Guiyang, 550025, Guizhou, China
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Lee JH, Vo HT, Kwon GJ, Kim HG, Kim JY. Multi-Camera-Based Sorting System for Surface Defects of Apples. SENSORS (BASEL, SWITZERLAND) 2023; 23:3968. [PMID: 37112310 PMCID: PMC10141532 DOI: 10.3390/s23083968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 04/10/2023] [Accepted: 04/12/2023] [Indexed: 06/19/2023]
Abstract
In this paper, we addressed the challenges in sorting high-yield apple cultivars that traditionally relied on manual labor or system-based defect detection. Existing single-camera methods failed to uniformly capture the entire surface of apples, potentially leading to misclassification due to defects in unscanned areas. Various methods were proposed where apples were rotated using rollers on a conveyor. However, since the rotation was highly random, it was difficult to scan the apples uniformly for accurate classification. To overcome these limitations, we proposed a multi-camera-based apple sorting system with a rotation mechanism that ensured uniform and accurate surface imaging. The proposed system applied a rotation mechanism to individual apples while simultaneously utilizing three cameras to capture the entire surface of the apples. This method offered the advantage of quickly and uniformly acquiring the entire surface compared to single-camera and random rotation conveyor setups. The images captured by the system were analyzed using a CNN classifier deployed on embedded hardware. To maintain excellent CNN classifier performance while reducing its size and inference time, we employed knowledge distillation techniques. The CNN classifier demonstrated an inference speed of 0.069 s and an accuracy of 93.83% based on 300 apple samples. The integrated system, which included the proposed rotation mechanism and multi-camera setup, took a total of 2.84 s to sort one apple. Our proposed system provided an efficient and precise solution for detecting defects on the entire surface of apples, improving the sorting process with high reliability.
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Affiliation(s)
- Ju-Hwan Lee
- Department of ICT Convergence System Engineering, Chonnam National University, 77 Yongbong-ro, Buk-gu, Gwangju 61186, Republic of Korea; (J.-H.L.); (H.-T.V.)
| | - Hoang-Trong Vo
- Department of ICT Convergence System Engineering, Chonnam National University, 77 Yongbong-ro, Buk-gu, Gwangju 61186, Republic of Korea; (J.-H.L.); (H.-T.V.)
| | - Gyeong-Ju Kwon
- LINUXIT, 53-18, Geumbong-ro 44beon-gil, Gwangsan-gu, Gwangju 62377, Republic of Korea;
| | - Hyoung-Gook Kim
- Department of Electronic Convergence Engineering, Kwangwoon University, 20 Gwangun-ro, Nowon-gu, Seoul 01897, Republic of Korea;
| | - Jin-Young Kim
- Department of ICT Convergence System Engineering, Chonnam National University, 77 Yongbong-ro, Buk-gu, Gwangju 61186, Republic of Korea; (J.-H.L.); (H.-T.V.)
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Wunderlich P, Pauli D, Neumaier M, Wisser S, Danneel HJ, Lohweg V, Dörksen H. Enhancing Shelf Life Prediction of Fresh Pizza with Regression Models and Low Cost Sensors. Foods 2023; 12:foods12061347. [PMID: 36981272 PMCID: PMC10048631 DOI: 10.3390/foods12061347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 03/15/2023] [Accepted: 03/20/2023] [Indexed: 03/30/2023] Open
Abstract
The waste of food presents a challenge for achieving a sustainable world. In Germany alone, over 10 million tonnes of food are discarded annually, with a worldwide total exceeding 1.3 billion tonnes. A significant contributor to this issue are consumers throwing away still edible food due to the expiration of its best-before date. Best-before dates currently include large safety margins, but more precise and cost effective prediction techniques are required. To address this challenge, research was conducted on low-cost sensors and machine learning techniques were developed to predict the spoilage of fresh pizza. The findings indicate that combining a gas sensor, such as volatile organic compounds or carbon dioxide, with a random forest or extreme gradient boosting regressor can accurately predict the day of spoilage. This provides a more accurate and cost-efficient alternative to current best-before date determination methods, reducing food waste, saving resources, and improving food safety by reducing the risk of consumers consuming spoiled food.
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Affiliation(s)
- Paul Wunderlich
- inIT-Institute Industrial IT, OWL University of Applied Sciences and Arts, 32657 Lemgo, Germany
| | - Daniel Pauli
- Institute for Life Science Technologies (ILT.NRW), OWL University of Applied Sciences and Arts, 32657 Lemgo, Germany
| | - Michael Neumaier
- Institute for Life Science Technologies (ILT.NRW), OWL University of Applied Sciences and Arts, 32657 Lemgo, Germany
| | - Stephanie Wisser
- inIT-Institute Industrial IT, OWL University of Applied Sciences and Arts, 32657 Lemgo, Germany
| | - Hans-Jürgen Danneel
- Institute for Life Science Technologies (ILT.NRW), OWL University of Applied Sciences and Arts, 32657 Lemgo, Germany
| | - Volker Lohweg
- inIT-Institute Industrial IT, OWL University of Applied Sciences and Arts, 32657 Lemgo, Germany
| | - Helene Dörksen
- inIT-Institute Industrial IT, OWL University of Applied Sciences and Arts, 32657 Lemgo, Germany
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