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Giussani B, Monti M, Riu J. From spectroscopic data variability to optimal preprocessing: leveraging multivariate error in almond powder adulteration of different grain size. Anal Bioanal Chem 2024:10.1007/s00216-024-05710-1. [PMID: 39710779 DOI: 10.1007/s00216-024-05710-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Revised: 12/09/2024] [Accepted: 12/11/2024] [Indexed: 12/24/2024]
Abstract
Analysing samples in their original form is increasingly crucial in analytical chemistry due to the need for efficient and sustainable practices. Analytical chemists face the dual challenge of achieving accuracy while detecting minute analyte quantities in complex matrices, often requiring sample pretreatment. This necessitates the use of advanced techniques with low detection limits, but the emphasis on sensitivity can conflict with efforts to simplify procedures and reduce solvent use. This article discusses the shift towards green analytical methods, focusing on portable spectroscopic techniques in the near-infrared (NIR) region. A case study involving the prediction of adulteration in almond flour with bitter almond flour illustrates the importance of particle size and the integration between the sample and the instrument. The study emphasizes the necessity of investigating the multivariate error associated with raw data to enhance data preprocessing strategies. This research provides valuable insights for professionals in the field, presenting a methodology applicable to a broad range of analytical applications while underscoring the critical role of raw data analysis in achieving accurate and reliable results.
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Affiliation(s)
- Barbara Giussani
- Dipartimento Di Scienza e Alta Tecnologia, Università Degli Studi Dell'Insubria, Via Valleggio 9, 22100, Como, Italy.
| | - Manuel Monti
- Dipartimento Di Scienza e Alta Tecnologia, Università Degli Studi Dell'Insubria, Via Valleggio 9, 22100, Como, Italy
| | - Jordi Riu
- Department of Analytical Chemistry and Organic Chemistry, Universitat Rovira i Virgili, Carrer Marcel·lí Domingo 1, 43007, Tarragona, Spain
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2
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Santos AD, Santos ICLD, Mendonça PMDS, Santos JCD, Zanuncio AJV, Zanuncio JC, Zanetti R. Colony identity clues for Syntermes grandis (Blattodea: Termitidae) individuals using near-infrared spectroscopy and PLS-DA approach. ENVIRONMENTAL ENTOMOLOGY 2024; 53:561-566. [PMID: 38703128 DOI: 10.1093/ee/nvae037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 03/31/2024] [Accepted: 04/17/2024] [Indexed: 05/06/2024]
Abstract
Termites are social insects with high species diversity in tropical ecosystems. Multivariate analysis with near-infrared spectroscopy (NIRS) and data interpretation can separate social insects belonging to different colonies of the same species. The objective of this study was to propose the use of discriminant analysis by partial least squares (PLS-DA) combined with NIRS to identify the colonial origin of the Syntermes grandis (Rambur, 1842) (Blattodea: Termitidae) in 2 castes. Six ground S. grandis colonies were identified and mapped; 30 workers and 30 soldier termites in each colony were submitted to spectral measurement with NIRS. PLS-DA applied to the termites' spectral absorbance was used to detect a spectral pattern per S. grandis colony by caste. PLS-DA regression with NIRS proved to be an approach with 99.9% accuracy for identifying the colonial origin of S. grandis workers and 98.3% for soldiers. The methodology showed the importance of qualitatively characterizing the colonial phenotypic response of this species. NIRS is a high-precision approach to identifying the colony origin of S. grandis workers and soldiers. The PLS-DA can be used to design ecological field studies to identify colony territorial competition and foraging behavior of subterranean termite species.
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Affiliation(s)
- Alexandre Dos Santos
- Laboratório de Fitossanidade (FitLab), Instituto Federal de Mato Grosso, Cáceres, MT, Brazil
| | | | | | - Juliana Cristina Dos Santos
- Departamento de Ensino, Instituto Federal do Sul de Minas Gerais, Campus Muzambinho, Estrada de Muzambinho, Morro Preto, Muzambinho, MG, Brazil
| | | | - José Cola Zanuncio
- Departamento de Entomologia/BIOAGRO, Universidade Federal de Viçosa, Viçosa, MG, Brazil
| | - Ronald Zanetti
- Departamento de Entomologia, Universidade Federal de Lavras, Lavras, MG, Brazil
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Ezenarro J, Riu J, Ahmed HJ, Busto O, Giussani B, Boqué R. Measurement errors and implications for preprocessing in miniaturised near-infrared spectrometers: Classification of sweet and bitter almonds as a case of study. Talanta 2024; 276:126271. [PMID: 38761663 DOI: 10.1016/j.talanta.2024.126271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Revised: 05/14/2024] [Accepted: 05/15/2024] [Indexed: 05/20/2024]
Abstract
Near-infrared (NIR) spectroscopy is a well-established analytical technique that has been used in many applications over the years. Due to the advancements in the semiconductor industry, NIR instruments have evolved from benchtop instruments to miniaturised portable devices. The miniaturised NIR instruments have gained more interest in recent years because of the fast and robust measurements they provide with almost no sample pretreatments. However, due to the very different configurations and characteristics of these instruments, they need a dedicated optimization of the measurement conditions, which is crucial for obtaining reliable results. To comprehensively grasp the capabilities and potentials offered by these sensors, it is imperative to examine errors that can affect the raw data, which is a facet frequently overlooked. In this study, measurement error covariance and correlation matrices were calculated and then visually inspected to gain insight into the error structures associated with the devices, and to find the optimal preprocessing technique that may result in the improvement of the models built. This strategy was applied to the classification of sweet and bitter almonds, which were measured with the three portable low-cost NIR devices (SCiO, FlameNIR+ and NeoSpectra Micro Development Kit) after removing the shelled, since their classification is of utmost importance for the almond industry. The results showed that bitter almonds can be classified from sweet almonds using any of the instruments after selecting the optimal preprocessing, obtained through inspection of covariance and correlation matrices. Measurements obtained with FlameNIR + device provided the best classification models with an accuracy of 98 %. The chosen strategy provides new insight into the performance characterization of the fast-growing miniaturised NIR instruments.
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Affiliation(s)
- Jokin Ezenarro
- Universitat Rovira i Virgili, Department of Analytical Chemistry and Organic Chemistry, Campus Sescelades, 43007, Tarragona, Catalonia, Spain
| | - Jordi Riu
- Universitat Rovira i Virgili, Department of Analytical Chemistry and Organic Chemistry, Campus Sescelades, 43007, Tarragona, Catalonia, Spain
| | - Hawbeer Jamal Ahmed
- Universitat Rovira i Virgili, Department of Analytical Chemistry and Organic Chemistry, Campus Sescelades, 43007, Tarragona, Catalonia, Spain; United Science Colleges, Department of Chemistry, Bakhan 108, Sulaymaneyah, Iraq
| | - Olga Busto
- Universitat Rovira i Virgili, Department of Analytical Chemistry and Organic Chemistry, Campus Sescelades, 43007, Tarragona, Catalonia, Spain
| | - Barbara Giussani
- Dipartimento di Scienza e Alta Tecnologia, Università degli Studi dell'Insubria, Via Valleggio, 9, 22100, Como, Italy.
| | - Ricard Boqué
- Universitat Rovira i Virgili, Department of Analytical Chemistry and Organic Chemistry, Campus Sescelades, 43007, Tarragona, Catalonia, Spain.
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Liu Y, Deng S, Li Y, Zhang Y, Zhang G, Yan H. Fast identification of the BmNPV infected silkworms by portable NIR spectroscopy and chemometrics. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 314:124158. [PMID: 38513318 DOI: 10.1016/j.saa.2024.124158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Revised: 03/11/2024] [Accepted: 03/12/2024] [Indexed: 03/23/2024]
Abstract
A convenient, low-cost, and rapid detection of BmNPV-infected silkworms is of great significance for the safety of the sericulture industry. In this study, a portable NIR system was used to collect the spectra of normal silkworms and the infected silkworms induced by the administration of Bombyx mori nuclear polyhedrosis virus (BmNPV). Different spectral pretreatment methods were applied, then principal component analysis (PCA), linear discriminant analysis (LDA), and partial least squares discriminant analysis (PLSDA) were used for the classification analysis. The results showed that PCA and LDA were unable to achieve the purpose. For the PLSDA calibration, after the pretreatment of SNV combining 2nd derivative, it had a high identification performance, and obtained low classification errors of 0.023, 0.033, and 0.030 for the calibration set, cross-validation set, and test set, respectively, with higher sensitivity and specificity. Therefore, the BmNPV-infected silkworms can be identified by portable NIR spectroscopy, which will effectively reduce losses for the sericulture industry.
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Affiliation(s)
- Yihan Liu
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China
| | - Shuanglin Deng
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China
| | - Yurong Li
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China; Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China; Key Laboratory of Silkworm and Mulberry Genetic Improvement, Ministry of Agriculture and Rural Affairs, The Sericultural Research Institute, Chinese Academy of Agricultural Sciences, Zhenjiang 212100, China
| | - Yeshun Zhang
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China; Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China; Key Laboratory of Silkworm and Mulberry Genetic Improvement, Ministry of Agriculture and Rural Affairs, The Sericultural Research Institute, Chinese Academy of Agricultural Sciences, Zhenjiang 212100, China
| | - Guozheng Zhang
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China; Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China; Key Laboratory of Silkworm and Mulberry Genetic Improvement, Ministry of Agriculture and Rural Affairs, The Sericultural Research Institute, Chinese Academy of Agricultural Sciences, Zhenjiang 212100, China
| | - Hui Yan
- School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China; Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang 212100, China; Key Laboratory of Silkworm and Mulberry Genetic Improvement, Ministry of Agriculture and Rural Affairs, The Sericultural Research Institute, Chinese Academy of Agricultural Sciences, Zhenjiang 212100, China.
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Gullifa G, Barone L, Papa E, Giuffrida A, Materazzi S, Risoluti R. Portable NIR spectroscopy: the route to green analytical chemistry. Front Chem 2023; 11:1214825. [PMID: 37818482 PMCID: PMC10561305 DOI: 10.3389/fchem.2023.1214825] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Accepted: 09/07/2023] [Indexed: 10/12/2023] Open
Abstract
There is a growing interest for cost-effective and nondestructive analytical techniques in both research and application fields. The growing approach by near-infrared spectroscopy (NIRs) pushes to develop handheld devices devoted to be easily applied for in situ determinations. Consequently, portable NIR spectrometers actually result definitively recognized as powerful instruments, able to perform nondestructive, online, or in situ analyses, and useful tools characterized by increasingly smaller size, lower cost, higher robustness, easy-to-use by operator, portable and with ergonomic profile. Chemometrics play a fundamental role to obtain useful and meaningful results from NIR spectra. In this review, portable NIRs applications, published in the period 2019-2022, have been selected to indicate starting references. These publications have been chosen among the many examples of the most recent applications to demonstrate the potential of this analytical approach which, not having the need for extraction processes or any other pre-treatment of the sample under examination, can be considered the "true green analytical chemistry" which allows the analysis where the sample to be characterized is located. In the case of industrial processes or plant or animal samples, it is even possible to follow the variation or evolution of fundamental parameters over time. Publications of specific applications in this field continuously appear in the literature, often in unfamiliar journal or in dedicated special issues. This review aims to give starting references, sometimes not easy to be found.
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Affiliation(s)
- G. Gullifa
- Department of Chemistry, “Sapienza” Università di Roma, Rome, Italy
| | - L. Barone
- Department of Chemistry, “Sapienza” Università di Roma, Rome, Italy
| | - E. Papa
- Department of Chemistry, “Sapienza” Università di Roma, Rome, Italy
| | - A. Giuffrida
- Department of Chemical Sciences, University of Catania, Catania, Italy
| | - S. Materazzi
- Department of Chemistry, “Sapienza” Università di Roma, Rome, Italy
| | - R. Risoluti
- Department of Chemistry, “Sapienza” Università di Roma, Rome, Italy
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Alagappan S, Dong A, Mikkelsen D, Hoffman LC, Mantilla SMO, James P, Yarger O, Cozzolino D. Near Infrared Spectroscopy for Prediction of Yeast and Mould Counts in Black Soldier Fly Larvae, Feed and Frass: A Proof of Concept. SENSORS (BASEL, SWITZERLAND) 2023; 23:6946. [PMID: 37571729 PMCID: PMC10422329 DOI: 10.3390/s23156946] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 08/01/2023] [Accepted: 08/02/2023] [Indexed: 08/13/2023]
Abstract
The use of black soldier fly larvae (BSFL) grown on different organic waste streams as a source of feed ingredient is becoming very popular in several regions across the globe. However, information about the easy-to-use methods to monitor the safety of BSFL is a major step limiting the commercialization of this source of protein. This study investigated the ability of near infrared (NIR) spectroscopy combined with chemometrics to predict yeast and mould counts (YMC) in the feed, larvae, and the residual frass. Partial least squares (PLS) regression was employed to predict the YMC in the feed, frass, and BSFL samples analyzed using NIR spectroscopy. The coefficient of determination in cross validation (R2CV) and the standard error in cross validation (SECV) obtained for the prediction of YMC for feed were (R2cv: 0.98 and SECV: 0.20), frass (R2cv: 0.81 and SECV: 0.90), larvae (R2cv: 0.91 and SECV: 0.27), and the combined set (R2cv: 0.74 and SECV: 0.82). However, the standard error of prediction (SEP) was considered moderate (range from 0.45 to 1.03). This study suggested that NIR spectroscopy could be utilized in commercial BSFL production facilities to monitor YMC in the feed and assist in the selection of suitable processing methods and control systems for either feed or larvae quality control.
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Affiliation(s)
- Shanmugam Alagappan
- Centre for Nutrition and Food Sciences, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Brisbane, QLD 4072, Australia
- Fight Food Waste Cooperative Research Centre, Wine Innovation Central Building Level 1, Waite Campus, Urrbrae, SA 5064, Australia
| | - Anran Dong
- School of Agriculture and Food Sustainability, Faculty of Science, University of Queensland, Brisbane, QLD 4072, Australia
| | - Deirdre Mikkelsen
- Centre for Nutrition and Food Sciences, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Brisbane, QLD 4072, Australia
- School of Agriculture and Food Sustainability, Faculty of Science, University of Queensland, Brisbane, QLD 4072, Australia
| | - Louwrens C. Hoffman
- Centre for Nutrition and Food Sciences, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Brisbane, QLD 4072, Australia
- Fight Food Waste Cooperative Research Centre, Wine Innovation Central Building Level 1, Waite Campus, Urrbrae, SA 5064, Australia
- Department of Animal Sciences, University of Stellenbosch, Private Bag X1, Matieland, Stellenbosch 7602, South Africa
| | - Sandra Milena Olarte Mantilla
- Centre for Nutrition and Food Sciences, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Brisbane, QLD 4072, Australia
| | - Peter James
- Centre for Animal Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Brisbane, QLD 4072, Australia
| | - Olympia Yarger
- Goterra, 14 Arnott Street, Hume, Canberra, ACT 2620, Australia
| | - Daniel Cozzolino
- Centre for Nutrition and Food Sciences, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland, Brisbane, QLD 4072, Australia
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