Earthworms, Rice Straw, and Plant Interactions Change the Organic Connections in Soil and Promote the Decontamination of Cadmium in Soil

The potential of ferrihydrite-synthetic humic-like acid composite as a soil amendment for metal-contaminated agricultural soil: Immobilization mechanisms by combining abiotic and biotic perspectives

In-situ passivation technique has attracted increasing attention for metal-contaminated agricultural soil remediation. However, metal immobilization mechanisms are mostly illustrated based on metal speciation changes and alterations in soil physicochemical properties from a macroscopic and abiotic perspective. In this study, a ferrihydrite-synthetic humic-like acid composite (FH-SHLA) was fabricated and applied as a passivator for a 90-day soil incubation. The heavy metals immobilization mechanisms of FH-SHLA were investigated by combining both abiotic and biotic perspectives. Effects of FH-SHLA application on soil micro-ecology were also evaluated. The results showed that the 5%FH-SHLA treatment significantly decreased the DTPA-extractable Pb, Cd and Zn by 80.75%, 46.82% and 63.63% after 90 days of incubation (P < 0.05), respectively. Besides, 5% FH-SHLA addition significantly increased soil pH, soil organic matter content and cation exchange capacity (P < 0.05). The SEM, FTIR, and XPS characterizations revealed that the abiotic metal immobilization mechanisms by FH-SHLA included surface complexation, precipitation, electrostatic attraction, and cation-π interactions. For biotic perspective, in-situ microorganisms synergistically participated in the immobilization process via sulfide precipitation and Fe mineral production. FH-SHLA significantly altered the diversity and composition of the soil microbial community, and enhanced the intensity and complexity of the microbial co-occurrence network. Both metal bioavailability and soil physiochemical parameters played a vital role in shaping microbial communities, while the former contributed more. Overall, this study provides new insight into the heavy metal passivation mechanism and demonstrates that FH-SHLA is a promising and environmentally friendly amendment for metal-contaminated soil remediation.

Influence of conditioner and straw on the herbaceous plant-based phytoremediation copper tailings: a field trial at Liujiagou tailings pond, China

A field trial was performed to carry out an enhanced phytoremediation technique for multi-metal contaminated copper tailings by Sudan grass (Sorghum Sudanese), ryegrass (Lolium perenne L.), and Bermuda grass (Cynodon dactylon), using conditioner (TH-LZ01) and straw combination into composite amendments as soil amendments, aimed to obtain the maximum of phytoremediation effect. The results showed that compared with untreated herbaceous plants, the application of conditioner and straw planted with herbaceous plants reduced the pH and conductivity and increased the organic matter and water content of the copper tailings to different degrees. With the addition of conditioner and straw, the DTPA-Cd, DTPA-Cu, DTPA-Pb, and DTPA-Zn contents in the copper tailings showed a decreasing trend compared with the untreated group. The herbaceous plants were promoted to reduce the percentage contents of acid soluble fractions Cd, Cu, Pb, and Zn and to increase the percentage contents of reducible, oxidizable, and residual fractions heavy metals (Cd, Cu, Pb, and Zn) in the copper tailings to different degrees. The contents of Cd, Cu, Pb, and Zn in the underground part of herbaceous plants were higher than those in the aboveground part, and the contents of Cd, Cu, Pb, and Zn in the aboveground part and underground part decreased after adding conditioner and straw, which indicated that the conditioner and straw inhibited the transport of heavy metals in the plant. Furthermore, the principal component analysis showed that the application of conditioner and straw with planting ryegrass had more potential for improving the physicochemical properties of copper tailings and reducing heavy metal toxicity, followed by Bermuda grass and Sudan grass.

Eisenia fetida impact on cadmium availability and distribution in specific components of the earthworm drilosphere

Although the potential of vermiremediation for restoring metal-contaminated soils is promising, the effects of earthworms on the availability of soil metals are still debatable. Most previous studies considered the soil as a "whole black box." Mobilization or immobilization of metals are affected by earthworm activities within drilosphere hotspots under different soil conditions, which has not been specifically studied. Therefore, an improved 2D terrarium was designed to study the impact of earthworm activities on cadmium (Cd) fate in the drilosphere hotspots (burrow wall soils, burrow casts, and surface casts) of different artificially spiked Cd treatments (CK: 0 mg kg-1; LM: 1 mg kg-1; and HM: 5 mg kg-1) with different organic amendments (2% and 10%). The results revealed that Cd increased earthworm activities with the highest cast production in HM and the highest burrow length in LM. Earthworms exhibited a stronger tendency to reduce total Cd concentration by 4.48-13.58% in casts of LM soils, while 3.37-5.22% in burrow walls under HM treatments. Overall, earthworms could increase the availability of Cd in casts under all conditions (55.46-121.01%). The organic amendments decreased the total Cd concentration and increased the availability of Cd in the disturbed soil. A higher amount of organic amendment significantly decreased total Cd concentration of the drilosphere by 1.16-5.83% in LM and HM treatments, while increasing DTPA-Cd concentrations in all components by 23.13-55.20 %, 14.63-35.11%, and 3.30-11.41% in CK, LM, and HM treatments, respectively, except for earthworm non-disturbed soil and no-earthworm soil in HM treatments. Redundancy analysis (RDA) revealed that the moisture, pH, and total carbon contents in soil are the main factors affecting Cd bioavailability. In this study, we decoded the "black box" of soil by making it relatively simple to better understand the effects and mechanisms of earthworm activities on soil metal availability and consequently provided comprehensive insights for using earthworms in soil vermiremediation.

Change of tetracycline speciation and its impacts on tetracycline removal efficiency in vermicomposting with epigeic and endogeic earthworms

Tetracycline pollution is common in Chinese arable soils, and vermicomposting is an effective approach to accelerate tetracycline bioremediation. However, current studies mainly focus on the impacts of soil physicochemical properties, microbial degraders and responsive degradation/resistance genes on tetracycline degradation efficiencies, and limited information is known about tetracycline speciation in vermicomposting. This study explored the roles of epigeic E. fetida and endogeic A. robustus in altering tetracycline speciation and accelerating tetracycline degradation in a laterite soil. Both earthworms significantly affected tetracycline profiles in soils by decreasing exchangeable and bound tetracycline but increasing water soluble tetracycline, thereby facilitating tetracycline degradation efficiencies. Although earthworms increased soil cation exchange capacity and enhanced tetracycline adsorption on soil particles, the significantly elevated soil pH and dissolved organic carbon benefited faster tetracycline degradation, attributing to the consumption of soil organic matter and humus by earthworms. Different from endogeic A. robustus which promoted both abiotic and biotic degradation of tetracycline, epigeic E. foetida preferently accelerated abiotic tetracyline degradation. Our findings described the change of tetracycline speciation during vermicompsiting process, unraveled the mechanisms of different earthworm types in tetracycline speciation and metabolisms, and offered clues for effective vermiremediation application at tetracycline contaminated sites.

Grain starch, fatty acids, and amino acids determine the pasting properties in dry cultivation plus rice cultivars

A field experiment was conducted to explore the effects of cultivars under flooding irrigation and dry cultivation (D) on starch, fatty acids, and amino acids metabolism, starch physicochemical traits, and pasting properties of rice flour. In this study, high-quality cultivar (HH) had better pasting properties among all other cultivars in D treatment. DHH supported higher short-branch chain amylopectin to develop the crystalline regions. Besides, DHH increased C16:0, C16:1, C18:1, C18:2, glutamate, aspartate, lysine, and threonine, and reduced glutelin and prolamine levels in head rice. Higher pasting properties in DHH was also supported by higher CO in esters and ketones, CO in carboxylic acid, esters, alcohols, and ethers, OH in alcohols before pasting and lower CO and CO in carboxylic acid, CO in aldehydes, and CO, CO and OH in carboxylic acid after pasting. Overall, these findings improve pasting properties to maintain a higher cooking quality in dry cultivation.

Assembly of root-associated bacterial community in cadmium contaminated soil following five-year consecutive application of soil amendments: Evidences for improved soil health

Soil amendments have been extensively used to remediate heavy metal contaminated soils by immobilizing or altering edaphic properties to reduce the bioavailability of heavy metals. However, the potential influences of long-term soil amendments applications on microbial communities and polluted soil health are still in its infancy despite that have been applied for decades. We used amplicon sequencing and q-PCR array to characterize the root-associated microbial community compositions and rhizosphere functional genes in a five-year field experiment with consecutive application of four amendments (lime, biochar, pig manure, and a commercial Mg-Ca-Si conditioner). Compared with the control, soil amendments reduced the available Cd (CaCl₂ extractable Cd) in soils and strongly affected bacterial community compositions in four root-associated niches. Five rare keystone bacterial species were found belonging to the family Gallionellaceae (1), Haliangiaceae (1), Anaerolineaceae (2), and Xanthobacteraceae (1), which significantly correlated with soil pH and the functional genes nifH and phoD. Random forest analysis showed that rhizosphere soil pH and microbial functions, and root-associated keystone bacterial community compositions mainly influenced the Cd concentrations in rice grains. Altogether, our field data revealed five-year consecutive application of soil amendments regulated root-associated microbial community assembly and enhanced microbial functions, thereby improved rhizosphere health of Cd-contaminated soils.

Dry cultivation with ratoon system impacts rice quality using rice flour physicochemical traits, fatty and amino acids contents

A field experiment was conducted to explore the impact on rice quality using high-quality (HH) or drought-resistant (HY) cultivars under flooding irrigation (F) or dry cultivation (D) in ratooning rice system by evaluating the metabolism or physicochemical traits of starch, fatty acids, and amino acids affecting grain quality. Compared to FHY and DHY in the main or ratoon season, DHH in ratoon season (DHHR) exhibited a higher appearance and processing quality but lower cooking quality. DHHR mainly synthesized long branch chain amylopectin to construct the crystalline regions with increased crystallinity, crystallites size, interplanar spacing, dislocation density, Asp and Thr in brown and head rice. Also, it accumulated more of C16:0, C18:0, C18:1, C18:2, and C18:3 but reduced glutelin in head rice. An increase in functional groups and diversity was seen in brown and head rice, respectively. Overall, these traits improved the processing, appearance, and pasting quality of DHHR.

Probing the biological toxicity of pyrene to the earthworm Eisenia fetida and the toxicity pathways of oxidative damage: A systematic study at the animal and molecular levels

Pyrene (Pyr), a widely used tetracyclic aromatic hydrocarbon, enters soil in large quantities and causes environmental pollution due to its production and mining. In order to systematically study the biotoxicity of pyrene to model organisms Eisenia fetida in soil, experiments were carried out from four dimensions: animal, tissue, cell and molecule. Experimental results proved that the mortality rate increased with increasing concentration and time of exposure to pyrene, while the mean body weight and spawning rate decreased. Meanwhile, when the pyrene concentration reached 900 mg/kg, the seminal vesicle and longitudinal muscle of the earthworm showed obvious atrophy. Experimental results at the cellular level showed that pyrene induced cell membrane damage and Ca²⁺ influx triggered mitochondrial membrane depolarization and a surge in ROS levels. Oxidative stress causes damage to proteins and lipids and DNA inside cells. When the mortality rate was 91.67 %, the Olive Tail Movement (OTM) of the comet experiment reached 15. The results of molecular level tests showed that pyrene inhibited the activity of Cu/Zn-superoxide dismutase (Cu/Zn-SOD) mainly by changing the microenvironment and secondary structure of amino acid Tyr 108. The weakened function of direct antioxidant enzymes may be the root cause of the excessive increase of reactive oxygen species (ROS) in cells. The systematic approach used in this study enriches the network of toxic pathways in toxicological studies, and basic data on the biological toxicity of pyrene can provide support for future soil contamination detection.

Remediation of copper-contaminated soils using Tagetes patula L., earthworms and arbuscular mycorrhizal fungi

Arbuscular mycorrhizal fungi (AMF) and earthworms have potential uses in the bioremediation of contaminated soils. In recent years, heavy metal-contaminated sites have been remediated by adding plants and AMF or earthworms to the soil. However, there are few studies on remediation using combinations of plants, animals, and microbes, especially for the remediation of Cu-contaminated soil. The present study investigated the separate and combined effects of AMF and earthworms on Cu-contaminated soil in which Tagetes patula L. was grown. The results show that the combined application of AMF and earthworms markedly increased the biomass of plant shoots and roots by more than 100%. It also increased Cu extraction by T. patula by 270%. The combined treatment was effective in increasing the CEC, contents of OM, and available Cu, P and K, but reduced the soil pH. Furthermore, the combined treatment significantly increased the abundance and diversity of the soil microbial community. In particular, the abundances of the bacteria Bacteroides, Proteobacteria, and Actinobacteria were increased, with the genera Flavobacterium, Pedobacter, Algoriphagus, Gaetbulibacter, Pseudomonas, Luteimonas, and Arthrobacter dominating. Meanwhile, the abundance of the fungus Zygomycota was increased, with Mortierella dominating. Moreover, inoculation with earthworms greatly improved the structure of the soil microbial community.

Metabolic regulation in soil microbial succession and niche differentiation by the polymer amendment under cadmium stress

Cadmium (Cd) contamination seriously threatens the agricultural production, so exploring the response of soil microenvironment to amendments in Cd-contaminated soils is of importance. In this study, the mechanism of remediation of Cd-contaminated soil using the polymer amendment was studied in cotton flowering stage. The results showed that the concentration of Cd in cotton root and various Cd forms in Cd-contaminated soils were obviously high. High concentration of Cd, especially exchangeable Cd, could seriously affect the soil microenvironment. The root growth of cotton could be promoted, the carbon and nitrogen concentration and storage in soil were increased by 21.72-50.00%, while the exchangeable Cd concentration in soil were decreased by 41.43%, after applying the polymer amendment. In addition, the polymer amendment affected the soil microbial niche, increased the relative abundance of soil bacteria (Flaviaesturariibacter, Rubellimicrobium, and Cnuella), fungi (Verticillium and Tricharina), actinomycetes (Blastococcus and Nocardioides), and fungivores nematodes (Aphelenchus), and improved soil microbial metabolic functions (metabolism of nucleotides and carbohydrates). Therefore, this polymer amendment could be used to remediate severe Cd-contaminated soils, and the changes in the microbial and nematode communities help us understand the detoxification mechanism of the polymer amendment in Cd-contaminated soils.

Synthesis of earthworm trace metal uptake and bioaccumulation data: Role of soil concentration, earthworm ecophysiology, and experimental design

Trace metals can be essential for organo-metallic structures and oxidation-reduction in metabolic processes or may cause acute or chronic toxicity at elevated concentrations. The uptake of trace metals by earthworms can cause transfer from immobilized pools in the soil to predators within terrestrial food chains. We report a synthesis and evaluation of uptake and bioaccumulation empirical data across different metals, earthworm genera, ecophysiological groups, soil properties, and experimental conditions (metal source, uptake duration, soil extraction method). Peer-reviewed datasets were extracted from manuscripts published before June 2019. The 56 studies contained 3513 soil-earthworm trace metal concentration paired data sets across 11 trace metals (As, Cd, Cr, Cu, Hg, Mn, Ni, Pb, Sb, U, Zn). Across all field and laboratory experiments studied, the median concentrations of Hg, Pb, and Cd in earthworm tissues that were above concentrations known to be hazardous for consumption by small mammals and avian predators but not for Cu, Zn, Cr, Ni, and As. Power regressions show only Hg and Cd earthworm tissue concentrations were well-correlated with soil concentrations with R² > 0.25. However, generalized linear mixed-effect models reveal that earthworm concentrations were significantly correlated with soil concentrations for log-transformed Hg, Cd, Cu, Zn, As, Sb (p < 0.05). Factors that significantly contributed to these relationships included earthworm genera, ecophysiological group, soil pH, and organic matter content. Moreover, spiking soils with metal salts, shortening the duration of exposure, and measuring exchangeable soil concentrations resulted in significantly higher trace metal uptake or greater bioaccumulation factors. Our results highlight that earthworms are able to consistently bioaccumulate toxic metals (Hg and Cd only) across field and laboratory conditions. However, future experiments should incorporate greater suites of trace metals, broader genera of earthworms, and more diverse laboratory and field settings to generate data to devise universal quantitative relationships between soil and earthworm tissue concentrations.

The Toxic Effects of Sulfoxaflor Induced in Earthworms (Eisenia fetida) under Effective Concentrations

Sulfoxaflor is a new kind of neonicotinoid insecticide that is used to control sap-feeding insect pests. In this study, a hazard assessment of sulfoxaflor on soil invertebrate earthworms was performed under effective concentrations. The results showed that different exposure times and doses had significant influence on the toxicity of sulfoxaflor. Sulfoxaflor degraded quickly in artificial soil with a degradation rate of 0.002–0.017 mg/(kg·d) and a half-life of 12.0–15.4 d. At 0.5 mg/kg and 1.0 mg/kg, the ·OH⁻ content, antioxidant enzyme activeities, thiobarbituric acid reactive substances (TBARS) content and 8-OHdG content had significant differences compared to those in the control group. On the 56th day, significant differences were only observed in the Glutathione S-transferase enzyme (GST) activity and 8-OHdG content at 1.0 mg/kg compared to those in the control group due to the degradation of sulfoxaflor. This indicated that the risk of sulfoxaflor to earthworms was reduced because it was easily degraded in soil. However, because sulfoxaflor is a super toxic pollutant to earthworms, high concentrations of sulfoxaflor should not be released into the soil environment.

Modified Rice Straw Enhanced Cadmium (II) Immobilization in Soil and Promoted the Degradation of Phenanthrene in Co-Contaminated Soil

Very limited information is available about heavy metal-polycyclic aromatic hydrocarbons (PAHs) depollution involving the modified natural material in soil. Using phenanthrene and cadmium (Cd) as model, this study investigated the effect(s) of modified rice straw by a NaOH solution and on PAHs, heavy metal availability, and their interactions. Treatment included chemical contaminant with/without modified/unmodified rice straw. Fourier Transform Infrared (FTIR) analysis revealed that certain functional groups including anionic matters groups, which can a complex with Cd²⁺, were exposed on the modified rice straw surfaces. Therefore, Cd concentration was significantly reduced by about 60%, 57%, 62.5 %, and, 64% in the root, shoot, CaCl₂, diethylenetriaminepentaacetic acid (DTPA), and extractable Cd, respectively. Subsequently, the prediction of the functional profile of the soil metagenome using Clusters Orthologous Groups (COGs) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) database revealed that the significantly changed individual COGs belonged to the carbohydrate metabolism, ion transports, and signaling (including cytochrome P450s) categories. This indicated that ion transports might be involved in Cd management, while carbohydrate metabolism, including bisphenol, benzoate, ethylbenzene degradation, and cytochrome P450s, were rather involved in phenanthrene metabolism. The exposed functional group might serve as an external substrate, and P450s might serve as a catalyst to activate and initiate phenanthrene metabolism process. These finding offer confirmation that modified straw could promote the reduction of heavy metal and the degradation of PAHs in soil.

TiO2 nanoparticles in irrigation water mitigate impacts of aged Ag nanoparticles on soil microorganisms, Arabidopsis thaliana plants, and Eisenia fetida earthworms

Treated wastewater is reclaimed to irrigate crops in a growing number of arid and semi-arid areas. In order to study the impacts of metallic nanoparticles (NPs) present in treated wastewater on soil ecosystems, a soil micro-ecosystem containing Arabidopsis thaliana plants, soil microorganisms, and Eisenia fetida earthworms was developed. The soil was irrigated with deionized water containing environmentally relevant concentrations of 70 µg/L of TiO₂ NPs; or 20 µg/L of an Ag mixture, which included 90% (w/w) Ag₂S NPs, 7.5% (w/w) Ag⁰ NPs, and 2.5% (w/w) Ag⁺ to represent speciation of aged Ag NPs in treated wastewater; or a combination of the TiO₂ NPs and the Ag mixture to reflect the frequent presence of both types of materials in treated wastewater. It was found that TiO₂ NPs alone were not toxic to the soil micro-ecosystem. Irrigation water containing 20 µg/L of the Ag mixture significantly reduced the soil microbial biomass, and inhibited the growth of plants and earthworms; however, a combination of 70 µg/L of TiO₂ and 20 µg/L of Ag did not show toxic impact on organism growth compared to the Control of deionized water irrigation. Taken together, these results indicate the importance of investigating the effects of different nanomaterials in combination as they are introduced to the environment-with environmentally relevant concentrations and speciation-instead of only selecting a single NP type or residual ion. Moreover, the results of this study support the safe application of reclaimed water from wastewater treatment plants for use in agricultural lands in regard to limited concentrations of aged NPs (i.e., TiO₂ and Ag) if present in combination.

Effect of Liming with Various Water Regimes on Both Immobilization of Cadmium and Improvement of Bacterial Communities in Contaminated Paddy: A Field Experiment

Cadmium (Cd) in paddy soil is one of the most harmful potentially toxic elements threatening human health. In order to study the effect of lime combined with intermittent and flooding conditions on the soil pH, Cd availability and its accumulation in tissues at the tillering, filling and maturity stages of rice, as well as enzyme activity and the microbial community in contaminated soil, a field experiment was conducted. The results showed that liming under flooding conditions is a more suitable strategy for in situ remediation of Cd-contaminated paddy soil than intermittent conditions. The availability of Cd in soils was closely related to the duration of flooding. Liming was an effective way at reducing available Cd in flooding soil because it promotes the transformation of Cd in soil from acid-extractable to reducible fraction or residual fraction during the reproductive growth period of rice. Compared with control, after liming, the concentration of Cd in brown rice was reduced by 34.9% under intermittent condition while reduced by 55.8% under flooding condition. Meanwhile, phosphatase, urease, and invertase activities in soil increased by 116.7%, 61.4% and 28.8%, and 41.3%, 46.5% and 20.8%, respectively. The high urease activity in tested soils could be used to assess soil recovery with liming for the remediation of contaminated soil. Soil microbial diversity was determined by the activities of soil acid phosphatase, urease and available Cd by redundancy analysis (RDA). The results indicated that the problem of Cd-contaminated paddy soil could achieve risk control of agricultural planting by chemical treatment such as lime, combined with various water regimes.