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Shafi Z, Shahid M, AlGarawi AM, Zeyad MT, Marey SA, Hatamleh AA, Wang S, Singh UB. The Exogenous Application of 24-Epibrassinolide (24-EBL) Increases the Cd and Pb Resilience in Zea mays (L.) by Regulating the Growth and Physiological Mechanism. Appl Biochem Biotechnol 2024; 196:3949-3973. [PMID: 37792177 DOI: 10.1007/s12010-023-04730-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/15/2023] [Indexed: 10/05/2023]
Abstract
Heavy metals (HMs) at a concentration above the threshold level act as environmental pollutants and very often threaten the agricultural productivity globally. Finding affordable and environmentally sustainable deliverables to address this issue is therefore a top focus. Phytohormones alleviate the HMs-induced toxicity and positively influence the plant growth. Considering the importance of phytohormones, the present study aimed to assess the effect of 24-epibrassinolide (24-EBL; 10 µM) as seed soaking treatment on growth performance of Zea mays (L.) contaminated separately with increasing concentrations (50-400 mg.kg-1) of lead (Pb) and cadmium (Cd). With increasing metal concentrations, growth and plant biometric criteria were reduced. For instance, Cd at 400 mg.kg-1 soil reduced the germination efficiency (56%), root (77%) and shoot (69%) dry weight, total chlorophyll (64%), and carotenoid content (45%). Contrarily, both HMs caused increase in stress biomarkers and antioxidant enzymes in seedling. However, exogenous administration of 24-EBL significantly enhanced the growth attributes, photosynthetic pigments, proline, MDA, and antioxidant enzyme activity while reducing the harmful effects of HMs stress on Z. mays. For instance, 24-EBL (10 µM) improved the germination percentage, root biomass, chl a, chl b, total chlorophyll, and carotenoid content by 16, 21, 17, 34, 18, and 15%, respectively, in 50 mg.Pb.kg-1 soil-treated Z. mays plants. Furthermore, the amounts of proline, MDA, and antioxidant enzymes in foliage of Z. mays were interestingly and dramatically lowered by 24-EBL application. Uptake of metals in plant organs was significantly reduced when 24-EBL was applied to Pb- and Cd-treated Z. mays. The recent findings help us better understand how 24-EBL regulates growth and development of Z. mays as well as how it boosts HMs' resilience, which could increase the possibility of employing 24-EBL to increase Z. mays productivity. Thus, the present findings confirmed the potentiality of pre-soaking the seed in 24-EBL solution that neutralizes the toxic effects of heavy metals in Z. mays plants. Therefore, it is suggested that applying phytohormones including 24-EBL in removal of heavy metal stress in plants is the best possible solution in sustainable agriculture.
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Affiliation(s)
- Zaryab Shafi
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-NBAIM, Kushmaur, Mau, U.P, India
| | - Mohammad Shahid
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-NBAIM, Kushmaur, Mau, U.P, India.
| | - Amal Mohamed AlGarawi
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, 11451, Riyadh, Saudi Arabia
| | - Mohammad Tarique Zeyad
- Department of Agricultural Microbiology, Faculty of Agriculture Sciences, Aligarh Muslim University (A.M.U), Aligarh, UP-20202, India
| | - Samy A Marey
- King Saud University, 11451, Riyadh, Saudi Arabia
| | - Ashraf Atef Hatamleh
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, 11451, Riyadh, Saudi Arabia
| | - Shifa Wang
- School of Electronic and Information Engineering, Chongqing Three Gorges University, Chongqing, 404000, Wanzhou, China
| | - Udai B Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-NBAIM, Kushmaur, Mau, U.P, India
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Shahid M, Altaf M, Danish M. The halotolerant exopolysaccharide-producing Rhizobium azibense increases the salt tolerance mechanism in Phaseolus vulgaris (L.) by improving growth, ion homeostasis, and antioxidant defensive enzymes. CHEMOSPHERE 2024; 360:142431. [PMID: 38797209 DOI: 10.1016/j.chemosphere.2024.142431] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Revised: 05/23/2024] [Accepted: 05/24/2024] [Indexed: 05/29/2024]
Abstract
Globally, agricultural productivity is facing a serious problem due to soil salinity which often causes osmotic, ionic, and redox imbalances in plants. Applying halotolerant rhizobacterial inoculants having multifarious growth-regulating traits is thought to be an effective and advantageous approach to overcome salinity stress. Here, salt-tolerant (tolerating 300 mM NaCl), exopolysaccharide (EPS) producing Rhizobium azibense SR-26 (accession no. MG063740) was assessed for salt alleviation potential by inoculating Phaseolus vulgaris (L.) plants raised under varying NaCl regimes. The metabolically active cells of strain SR-26 produced a significant amount of phytohormones (indole-3-acetic acid, gibberellic acid, and cytokinin), ACC deaminase, ammonia, and siderophore under salt stress. Increasing NaCl concentration variably affected the EPS produced by SR-26. The P-solubilization activity of the SR-26 strain was positively impacted by NaCl, as demonstrated by OD shift in NaCl-treated/untreated NBRIP medium. The detrimental effect of NaCl on plants was lowered by inoculation of halotolerant strain SR-26. Following soil inoculation, R. azibense significantly (p ≤ 0.05) enhanced seed germination (10%), root (19%) shoot (23%) biomass, leaf area (18%), total chlorophyll (21%), and carotenoid content (32%) of P. vulgaris raised in soil added with 40 mM NaCl concentration. Furthermore, strain SR-26 modulated the relative leaf water content (RLWC), proline, total soluble protein (TSP), and sugar (TSS) of salt-exposed plants. Moreover, R. azibense inoculation lowered the concentrations of oxidative stress biomarkers; MDA (29%), H2O2 content (24%), electrolyte leakage (31%), membrane stability (36%) and Na+ ion uptake (28%) when applied to 40 mM NaCl-treated plants. Further, R. azibense increases the salt tolerance mechanism of P. vulgaris by upregulating the antioxidant defensive responses. Summarily, it is reasonable to propose that EPS-synthesizing halotolerant R. azibense SR-26 should be applied as the most cost-effective option for increasing the yields of legume crops specifically P. vulgaris in salinity-challenged soil systems.
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Affiliation(s)
- Mohammad Shahid
- Department of Agricultural Microbiology, Faculty of Agriculture Science, Aligarh Muslim University, Aligarh, U.P, 202002, India.
| | - Mohammad Altaf
- Department of Chemistry, College of Science, King Saud University, P.O. Box 2455, 11451, Riyadh, Saudi Arabia
| | - Mohammad Danish
- Botany Section, School of Sciences, Maulana Azad National University, Hyderabad, India
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Dhar SK, Kaur J, Singh GB, Chauhan A, Tamang J, Lakhara N, Asyakina L, Atuchin V, Mudgal G, Abdi G. Novel Bacillus and Prestia isolates from Dwarf century plant enhance crop yield and salinity tolerance. Sci Rep 2024; 14:14645. [PMID: 38918548 PMCID: PMC11199671 DOI: 10.1038/s41598-024-65632-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Accepted: 06/21/2024] [Indexed: 06/27/2024] Open
Abstract
Soil salinity is a major environmental stressor impacting global food production. Staple crops like wheat experience significant yield losses in saline environments. Bioprospecting for beneficial microbes associated with stress-resistant plants offers a promising strategy for sustainable agriculture. We isolated two novel endophytic bacteria, Bacillus cereus (ADJ1) and Priestia aryabhattai (ADJ6), from Agave desmettiana Jacobi. Both strains displayed potent plant growth-promoting (PGP) traits, such as producing high amounts of indole-3-acetic acid (9.46, 10.00 µgml-1), ammonia (64.67, 108.97 µmol ml-1), zinc solubilization (Index of 3.33, 4.22, respectively), ACC deaminase production and biofilm formation. ADJ6 additionally showed inorganic phosphate solubilization (PSI of 2.77), atmospheric nitrogen fixation, and hydrogen cyanide production. Wheat seeds primed with these endophytes exhibited enhanced germination, improved growth profiles, and significantly increased yields in field trials. Notably, both ADJ1 and ADJ6 tolerated high salinity (up to 1.03 M) and significantly improved wheat germination and seedling growth under saline stress, acting both independently and synergistically. This study reveals promising stress-tolerance traits within endophytic bacteria from A. desmettiana. Exploiting such under-explored plant microbiomes offers a sustainable approach to developing salt-tolerant crops, mitigating the impact of climate change-induced salinization on global food security.
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Affiliation(s)
- Sanjoy Kumar Dhar
- University Institute of Biotechnology, Chandigarh University, Mohali, Punjab, 140413, India
| | - Jaspreet Kaur
- University Institute of Biotechnology, Chandigarh University, Mohali, Punjab, 140413, India
| | - Gajendra Bahadur Singh
- University Institute of Biotechnology, Chandigarh University, Mohali, Punjab, 140413, India
| | - Arjun Chauhan
- Department of Biotechnology, Institute of Applied Sciences & Humanities, GLA University, Mathura, Uttar Pradesh, 281406, India
| | - Jeewan Tamang
- University Institute of Agricultural Sciences, Chandigarh University, Mohali, Punjab, 140413, India
- Khaniyabas Rural Municipality, Province 3, Dhading, Bagmati Zone, 45100, Nepal
| | - Nikita Lakhara
- University Institute of Biotechnology, Chandigarh University, Mohali, Punjab, 140413, India
| | - Lyudmila Asyakina
- Laboratory for Phytoremediation of Technogenically Disturbed Ecosystems, Kemerovo State University, Krasnaya Street, 6, Kemerovo, Russia, 650000
| | - Victor Atuchin
- Laboratory of Optical Materials and Structures, Institute of Semiconductor Physics, SB RAS, Novosibirsk, Russia, 630090
- Research and Development Department, Kemerovo State University, Kemerovo, Russia, 650000
- Department of Industrial Machinery Design, Novosibirsk State Technical University, Novosibirsk, Russia, 630073
- R&D Center "Advanced Electronic Technologies", Tomsk State University, Tomsk, Russia, 634034
| | - Gaurav Mudgal
- University Institute of Biotechnology, Chandigarh University, Mohali, Punjab, 140413, India.
- Center for Waste Management and Renewable Energy, Saveetha Dental College and Hospitals, Saveetha Institute of Medical and Technical Sciences, Saveetha University, Chennai, 600077, India.
| | - Gholamreza Abdi
- Department of Biotechnology, Persian Gulf Research Institute, Persian Gulf University, Bushehr, 75169, Iran.
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Barajas González JA, de la Rosa YEK, Carrillo-González R, González-Chávez MDCÁ, Hidalgo Lara ME, Soto Hernández RM, Herrera Cabrera BE. NaCl Modifies Biochemical Traits in Bacterial Endophytes Isolated from Halophytes: Towards Salinity Stress Mitigation Using Consortia. PLANTS (BASEL, SWITZERLAND) 2024; 13:1626. [PMID: 38931058 PMCID: PMC11207235 DOI: 10.3390/plants13121626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Revised: 05/25/2024] [Accepted: 06/07/2024] [Indexed: 06/28/2024]
Abstract
Bacterial endophytes (120) were isolated from six halophytes (Distichlis spicata, Cynodon dactylon, Eragrostis obtusiflora, Suaeda torreyana, Kochia scoparia, and Baccharis salicifolia). These halophiles were molecularly identified and characterized with or without NaCl conditions. Characterization was based on tests such as indole acetic acid (IAA), exopolysaccharides (EPS), and siderophores (SID) production; solubilization of phosphate (P), potassium (K), zinc (Zn), and manganese (Mn); mineralization of phytate; enzymatic activity (acid and alkaline phosphatase, phytases, xylanases, and chitinases) and the mineralization/solubilization mechanisms involved (organic acids and sugars). Moreover, compatibility among bacteria was assessed. Eleven halophiles were characterized as highly tolerant to NaCl (2.5 M). The bacteria isolated were all different from each other. Two belonged to Bacillus velezensis and one to B. pumilus while the rest of bacteria were identified up to the genus level as belonging to Bacillus, Halobacillus, Halomonas, Pseudomonas, Nesterenkonia, and three strains of Oceanobacillus. The biochemical responses of nutrient solubilization and enzymatic activity were different between bacteria and were influenced by the presence of NaCl. Organic acids were involved in P mineralization and nutrient solubilization. Tartaric acid was common in the solubilization of P, Zn, and K. Maleic and vanillic acid were only detected in Zn and K solubilization, respectively. Furthermore, sugars appeared to be involved in the solubilization of nutrients; fructose was detected in the solubilization tests. Therefore, these biochemical bacterial characteristics should be corroborated in vivo and tested as a consortium to mitigate saline stress in glycophytes under a global climate change scheme that threatens to exacerbate soil salinity.
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Affiliation(s)
- Jesús Adrián Barajas González
- Programa en Edafología, Colegio de Postgraduados, Campus Montecillo, Carr. México-Texcoco km 36.5, Montecillo 56230, Mexico; (J.A.B.G.); (R.C.-G.)
| | - Yersaín Ely Keller de la Rosa
- Departamento de Biotecnología y Bioingeniería, CINVESTAV, Av. IPN 2508, Ciudad de México 07360, Mexico; (Y.E.K.d.l.R.); (M.E.H.L.)
| | - Rogelio Carrillo-González
- Programa en Edafología, Colegio de Postgraduados, Campus Montecillo, Carr. México-Texcoco km 36.5, Montecillo 56230, Mexico; (J.A.B.G.); (R.C.-G.)
| | | | - María Eugenia Hidalgo Lara
- Departamento de Biotecnología y Bioingeniería, CINVESTAV, Av. IPN 2508, Ciudad de México 07360, Mexico; (Y.E.K.d.l.R.); (M.E.H.L.)
| | - Ramón Marcos Soto Hernández
- Programa en Botánica, Colegio de Postgraduados, Campus Montecillo, Carr. México-Texcoco km 36.5, Montecillo 56230, Mexico;
| | - Braulio Edgar Herrera Cabrera
- Programa en Estrategias de Desarrollo Agrícola Regional, Colegio de Postgraduados, Campus Puebla, Carr. Fed. Mex-Pue, Puebla 72130, Mexico;
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Khoso MA, Wang M, Zhou Z, Huang Y, Li S, Zhang Y, Qian G, Ko SN, Pang Q, Liu C, Li L. Bacillus altitudinis AD13-4 Enhances Saline-Alkali Stress Tolerance of Alfalfa and Affects Composition of Rhizosphere Soil Microbial Community. Int J Mol Sci 2024; 25:5785. [PMID: 38891975 PMCID: PMC11171787 DOI: 10.3390/ijms25115785] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 05/10/2024] [Accepted: 05/15/2024] [Indexed: 06/21/2024] Open
Abstract
Saline and alkaline stresses limit plant growth and reduce crop yield. Soil salinization and alkalization seriously threaten the sustainable development of agriculture and the virtuous cycle of ecology. Biofertilizers made from plant growth-promoting rhizobacteria (PGPR) not only enhance plant growth and stress tolerance, but also are environmentally friendly and cost-effective. There have been many studies on the mechanisms underlying PGPRs enhancing plant salt resistance. However, there is limited knowledge about the interaction between PGPR and plants under alkaline-sodic stress. To clarify the mechanisms underlying PGPR's improvement of plants' tolerance to alkaline-sodic stress, we screened PGPR from the rhizosphere microorganisms of local plants growing in alkaline-sodic land and selected an efficient strain, Bacillus altitudinis AD13-4, as the research object. Our results indicate that the strain AD13-4 can produce various growth-promoting substances to regulate plant endogenous hormone levels, cell division and differentiation, photosynthesis, antioxidant capacity, etc. Transcriptome analysis revealed that the strain AD13-4 significantly affected metabolism and secondary metabolism, signal transduction, photosynthesis, redox processes, and plant-pathogen interactions. Under alkaline-sodic conditions, inoculation of the strain AD13-4 significantly improved plant biomass and the contents of metabolites (e.g., soluble proteins and sugars) as well as secondary metabolites (e.g., phenols, flavonoids, and terpenoids). The 16S rRNA gene sequencing results indicated that the strain AD13-4 significantly affected the abundance and composition of the rhizospheric microbiota and improved soil activities and physiochemical properties. Our study provides theoretical support for the optimization of saline-alkali-tolerant PGPR and valuable information for elucidating the mechanism of plant alkaline-sodic tolerance.
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Affiliation(s)
- Muneer Ahmed Khoso
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Mingyu Wang
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Zhenzhen Zhou
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Yongxue Huang
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Shenglin Li
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
- College of Life Sciences and Agriculture and Forestry, Qiqihar University, Qiqihar 161006, China
| | - Yiming Zhang
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Guangtao Qian
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Song Nam Ko
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Qiuying Pang
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Changli Liu
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
| | - Lixin Li
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin 150040, China; (M.A.K.); (M.W.); (Z.Z.); (Y.H.); (S.L.); (Y.Z.); (G.Q.); (S.N.K.); (Q.P.)
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Feigl V, Medgyes-Horváth A, Kari A, Török Á, Bombolya N, Berkl Z, Farkas É, Fekete-Kertész I. The potential of Hungarian bauxite residue isolates for biotechnological applications. BIOTECHNOLOGY REPORTS (AMSTERDAM, NETHERLANDS) 2024; 41:e00825. [PMID: 38225962 PMCID: PMC10788403 DOI: 10.1016/j.btre.2023.e00825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 12/14/2023] [Accepted: 12/19/2023] [Indexed: 01/17/2024]
Abstract
Bauxite residue (red mud) is considered an extremely alkaline and salty environment for the biota. We present the first attempt to isolate, identify and characterise microbes from Hungarian bauxite residues. Four identified bacterial strains belonged to the Bacilli class, one each to the Actinomycetia, Gammaproteobacteria, and Betaproteobacteria classes, and two to the Alphaproteobacteria class. All three identified fungi strains belonged to the Ascomycota division. Most strains tolerated pH 8-10 and salt content at 5-7% NaCl concentration. Alkalihalobacillus pseudofirmus BRHUB7 and Robertmurraya beringensis BRHUB9 can be considered halophilic and alkalitolerant. Priestia aryabhattai BRHUB2, Penicillium chrysogenum BRHUF1 and Aspergillus sp. BRHUF2 are halo- and alkalitolerant strains. Most strains produced siderophores and extracellular polymeric substances, could mobilise phosphorous, and were cellulose degraders. These strains and their enzymes are possible candidates for biotechnological applications in processes requiring extreme conditions, e.g. bioleaching of critical raw materials and rehabilitation of alkaline waste deposits.
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Affiliation(s)
- Viktória Feigl
- Budapest University of Technology and Economics, Faculty of Chemical Technology and Biotechnology, Department of Applied Biotechnology and Food Science, Műegyetem Rkp 3., Budapest 1111, Hungary
| | - Anna Medgyes-Horváth
- ELTE Eötvös Loránd University, Department of Physics of Complex Systems, Pázmány P. s. 1A, Budapest 1117, Hungary
| | - András Kari
- ELTE Eötvös Loránd University, Department of Microbiology, Pázmány P. s. 1A, Budapest 1117, Hungary
| | - Ádám Török
- Budapest University of Technology and Economics, Faculty of Chemical Technology and Biotechnology, Department of Applied Biotechnology and Food Science, Műegyetem Rkp 3., Budapest 1111, Hungary
| | - Nelli Bombolya
- Budapest University of Technology and Economics, Faculty of Chemical Technology and Biotechnology, Department of Applied Biotechnology and Food Science, Műegyetem Rkp 3., Budapest 1111, Hungary
| | - Zsófia Berkl
- Budapest University of Technology and Economics, Faculty of Chemical Technology and Biotechnology, Department of Applied Biotechnology and Food Science, Műegyetem Rkp 3., Budapest 1111, Hungary
| | - Éva Farkas
- Budapest University of Technology and Economics, Faculty of Chemical Technology and Biotechnology, Department of Applied Biotechnology and Food Science, Műegyetem Rkp 3., Budapest 1111, Hungary
- Norwegian Institute of Bioeconomy Research (NIBIO), Division of Environment and Natural Resources, Department of Biogeochemistry and Soil Quality, Høgskoleveien 7, 1432 Ås, Norway
| | - Ildikó Fekete-Kertész
- Budapest University of Technology and Economics, Faculty of Chemical Technology and Biotechnology, Department of Applied Biotechnology and Food Science, Műegyetem Rkp 3., Budapest 1111, Hungary
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Belhassan M, Farhat A, Abed HE, Chaabeen Z, Bouzid F, Elleuch A, Fendri I, Khemakhem B. Isolation and identification of a new Bacillus glycinifermentans strain from date palm rhizosphere and its effect on barley seeds under heavy metal stress. Braz J Microbiol 2024; 55:843-854. [PMID: 38270795 PMCID: PMC10920608 DOI: 10.1007/s42770-024-01263-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 01/14/2024] [Indexed: 01/26/2024] Open
Abstract
Soil contamination by heavy metals is one of the major problems that adversely decrease plant growth and biomass production. Inoculation with the plant growth-promoting rhizobacteria (PGPR) can attenuate the toxicity of heavy metals and enhancing the plant growth. In this study, we evaluated the potential of a novel extremotolerant strain (IS-2 T) isolated from date palm rhizosphere to improve barley seedling growth under heavy metal stress. The species-level identification was carried out using morphological and biochemical methods combined with whole genome sequencing. The bacterial strain was then used in vitro for inoculating Hordeum vulgare L. exposed to three different Cr, Zn, and Ni concentrations (0.5, 1, and 2 mM) in petri dishes and different morphological parameters were assessed. The strain was identified as Bacillus glycinifermentans species. This strain showed high tolerance to pH (6-11), salt stress (0.2-2 M), and heavy metals. Indeed, the minimum inhibitory concentrations at which bacterium was unable to grow were 4 mM for nickel, 3 mM for zinc, more than 8 mM for copper, and 40 mM for chromium, respectively. It was observed that inoculation of Hordeum vulgare L. under metal stress conditions with Bacillus glycinifermentans IS-2 T stain improved considerably the growth parameters. The capacity of the IS-2 T strain to withstand a range of abiotic stresses and improve barley seedling development under lab conditions makes it a promising candidate for use as a PGPR in zinc, nickel, copper, and chromium bioremediation.
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Affiliation(s)
- Mayssa Belhassan
- Laboratory of Plant Biotechnology Applied to the Improvement of Cultures, Faculty of Sciences of Sfax, University of Sfax, B.P. 1171, 3000, 3029, Sfax, Tunisia
| | - Ameny Farhat
- Laboratory of Biopesticides, Centre of Biotechnology of Sfax, University of Sfax, P.O. Box 1177, 3018, Sfax, Tunisia
| | - Hanen El Abed
- Laboratory of Plant Biotechnology Applied to the Improvement of Cultures, Faculty of Sciences of Sfax, University of Sfax, B.P. 1171, 3000, 3029, Sfax, Tunisia
| | - Zayneb Chaabeen
- Laboratory of Plant Biotechnology Applied to the Improvement of Cultures, Faculty of Sciences of Sfax, University of Sfax, B.P. 1171, 3000, 3029, Sfax, Tunisia
| | - Fériel Bouzid
- Laboratory of Molecular and Cellular Screening Process (LPCMC), Centre of Biotechnology of Sfax, University of Sfax, Sfax, Tunisia
| | - Amine Elleuch
- Laboratory of Plant Biotechnology Applied to the Improvement of Cultures, Faculty of Sciences of Sfax, University of Sfax, B.P. 1171, 3000, 3029, Sfax, Tunisia
| | - Imen Fendri
- Laboratory of Plant Biotechnology Applied to the Improvement of Cultures, Faculty of Sciences of Sfax, University of Sfax, B.P. 1171, 3000, 3029, Sfax, Tunisia
| | - Bassem Khemakhem
- Laboratory of Plant Biotechnology Applied to the Improvement of Cultures, Faculty of Sciences of Sfax, University of Sfax, B.P. 1171, 3000, 3029, Sfax, Tunisia.
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Qin Y, Khan Q, Yan JW, Wang YY, Pan YF, Huang Y, Wei JL, Guo DJ, Li YR, Dong DF, Xing YX. Molecular mechanism of endophytic bacteria DX120E regulating polyamine metabolism and promoting plant growth in sugarcane. FRONTIERS IN PLANT SCIENCE 2024; 15:1334907. [PMID: 38476689 PMCID: PMC10927768 DOI: 10.3389/fpls.2024.1334907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 02/09/2024] [Indexed: 03/14/2024]
Abstract
Introduction Sugarcane endophytic nitrogen-fixing bacterium Klebsiella variícola DX120E displayed broad impact on growth, but the exact biological mechanism, especially polyamines (PAs) role, is still meager. Methods To reveal this relationship, the content of polyamine oxidase (PAO), PAs, reactive oxygen species (ROS)-scavenging antioxidative enzymes, phytohormones, 1-aminocyclopropane-1-carboxylic synthase (ACS), chlorophyll content, and biomass were determined in sugarcane incubated with the DX120E strain. In addition, expression levels of the genes associated with polyamine metabolism were measured by transcriptomic analysis. Results Genomic analysis of Klebsiella variícola DX120E revealed that 39 genes were involved in polyamine metabolism, transport, and the strain secrete PAs in vitro. Following a 7-day inoculation period, DX120E stimulated an increase in the polyamine oxidase (PAO) enzyme in sugarcane leaves, however, the overall PAs content was reduced. At 15 days, the levels of PAs, ROS-scavenging antioxidative enzymes, and phytohormones showed an upward trend, especially spermidine (Spd), putrescine (Put), catalase (CAT), auxin (IAA), gibberellin (GA), and ACS showed a significant up-regulation. The GO and KEGG enrichment analysis found a total of 73 differentially expressed genes, involving in the cell wall (9), stimulus response (13), peroxidase activity (33), hormone (14) and polyamine metabolism (4). Discussion This study demonstrated that endophytic nitrogen-fixing bacteria stimulated polyamine metabolism and phytohormones production in sugarcane plant tissues, resulting in enhanced growth. Dual RNA-seq analyses provided insight into the early-stage interaction between sugarcane seedlings and endophytic bacteria at the transcriptional level. It showed how diverse metabolic processes selectively use distinct molecules to complete the cell functions under present circumstances.
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Affiliation(s)
- Ying Qin
- College of Agriculture, Guangxi University, Nanning, China
| | - Qaisar Khan
- Ecology College, Lishui University, Lishui, China
| | - Jia-Wei Yan
- College of Agriculture, Guangxi University, Nanning, China
| | - Yu-Yi Wang
- College of Agriculture, Guangxi University, Nanning, China
| | - Yang-Fei Pan
- College of Agriculture, Guangxi University, Nanning, China
| | - Ying Huang
- College of Agriculture, Guangxi University, Nanning, China
| | - Jiang-Lu Wei
- Centre for Biotechnology Research, Guangxi South Subtropical Agricultural Science Research Institute, Chongzuo, China
| | - Dao-Jun Guo
- College of Life Sciences and Engineering, Hexi University, Zhangye, China
| | - Yang-Rui Li
- Guangxi Key Laboratory of Sugarcane Genetic Improvement, Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture and Rural Affairs, Sugarcane Research Institute of Guangxi Academy of Agricultural Sciences, Sugarcane Research Center of Chinese Academy of Agricultural Sciences, Nanning, China
| | - Deng-Feng Dong
- College of Agriculture, Guangxi University, Nanning, China
| | - Yong-Xiu Xing
- College of Agriculture, Guangxi University, Nanning, China
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9
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Altaf M, Ilyas T, Shahid M, Shafi Z, Tyagi A, Ali S. Trichoderma Inoculation Alleviates Cd and Pb-Induced Toxicity and Improves Growth and Physiology of Vigna radiata (L.). ACS OMEGA 2024; 9:8557-8573. [PMID: 38405473 PMCID: PMC10882690 DOI: 10.1021/acsomega.3c10470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Revised: 01/04/2024] [Accepted: 01/11/2024] [Indexed: 02/27/2024]
Abstract
Heavy metals (HMs) pose a serious threat to agricultural productivity. Therefore, there is a need to find sustainable approaches to combat HM stressors in agriculture. In this study, we isolated Trichoderma sp. TF-13 from metal-polluted rhizospheric soil, which has the ability to resist 1600 and 1200 μg mL-1 cadmium (Cd) and lead (Pb), respectively. Owing to its remarkable metal tolerance, this fungal strain was applied for bioremediation of HMs in Vigna radiata (L.). Strain TF-13 produced siderophore, salicylic acid (SA; 43.4 μg mL-1) and 2,3-DHBA (21.0 μg mL-1), indole-3-acetic acid, ammonia, and ACC deaminase under HM stressed conditions. Increasing concentrations of tested HM ions caused severe reduction in overall growth of plants; however, Trichoderma sp. TF-13 inoculation significantly (p ≤ 0.05) increased the growth and physiological traits of HM-treated V. radiata. Interestingly, Trichoderma sp. TF-13 improved germination rate (10%), root length (26%), root biomass (32%), and vigor index (12%) of V. radiata grown under 25 μg Cd kg-1 soil. Additionally, Trichoderma inoculation showed a significant (p ≤ 0.05) increase in total chlorophyll, chl a, chl b, carotenoid content, root nitrogen (N), and root phosphorus (P) of 100 μg Cd kg-1 soil-treated plants over uninoculated treatment. Furthermore, enzymatic and nonenzymatic antioxidant activities of Trichoderma inoculated in metal-treated plants were improved. For instance, strain TF-13 increased proline (37%), lipid peroxidation (56%), catalase (35%), peroxidase (42%), superoxide dismutase (27%), and glutathione reductase (39%) activities in 100 μg Pb kg-1 soil-treated plants. The uptake of Pb and Cd in root/shoot tissues was decreased by 34/39 and 47/38% in fungal-inoculated and 25 μg kg-1 soil-treated plants. Thus, this study demonstrates that stabilizing metal mobility in the rhizosphere through Trichoderma inoculation significantly reduced the detrimental effects of Cd and Pb toxicity in V. radiata and also enhanced development under HM stress conditions.
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Affiliation(s)
- Mohammad Altaf
- Department
of Chemistry, College of Science, King Saud
University, P.O. Box 2455, 11451 Riyadh, Saudi
Arabia
| | - Talat Ilyas
- Department
of Bioengineering, Faculty of Engineering, Integral University, Lucknow, Uttar Pradesh 226026, India
| | - Mohammad Shahid
- Department
of Agricultural Microbiology, Faculty of Agricultural Science, Aligarh Muslim University, Aligarh 202002, Uttar Pradesh, India
| | - Zaryab Shafi
- Department
of Biosciences, Faculty of Science, Integral
University, Lucknow, Uttar Pradesh 226026, India
| | - Anshika Tyagi
- Department
of Biotechnology, Yeungnam University, Gyeongsan Gyeongbuk 38541, Republic of Korea
| | - Sajad Ali
- Department
of Biotechnology, Yeungnam University, Gyeongsan Gyeongbuk 38541, Republic of Korea
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10
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Wang M, Sun H, Xu Z. Characterization of Rhizosphere Microbial Diversity and Selection of Plant-Growth-Promoting Bacteria at the Flowering and Fruiting Stages of Rapeseed. PLANTS (BASEL, SWITZERLAND) 2024; 13:329. [PMID: 38276786 PMCID: PMC10819753 DOI: 10.3390/plants13020329] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Revised: 01/17/2024] [Accepted: 01/18/2024] [Indexed: 01/27/2024]
Abstract
Plant rhizosphere microorganisms play an important role in modulating plant growth and productivity. This study aimed to elucidate the diversity of rhizosphere microorganisms at the flowering and fruiting stages of rapeseed (Brassica napus). Microbial communities in rhizosphere soils were analyzed via high-throughput sequencing of 16S rRNA for bacteria and internal transcribed spacer (ITS) DNA regions for fungi. A total of 401 species of bacteria and 49 species of fungi in the rhizosphere soil samples were found in three different samples. The composition and diversity of rhizosphere microbial communities were significantly different at different stages of rapeseed growth. Plant-growth-promoting rhizobacteria (PGPRs) have been widely applied to improve plant growth, health, and production. Thirty-four and thirty-one PGPR strains were isolated from the rhizosphere soil samples collected at the flowering and fruiting stages of rapeseed, respectively. Different inorganic phosphorus- and silicate-solubilizing and auxin-producing capabilities were found in different strains, in addition to different heavy-metal resistances. This study deepens the understanding of the microbial diversity in the rapeseed rhizosphere and provides a microbial perspective of sustainable rapeseed cultivation.
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Affiliation(s)
- Mengjiao Wang
- School of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong 723000, China;
- Collaborative Innovation Center for Comprehensive Development of Biological Resources in Qinling-Ba Mountains, Hanzhong 723000, China
- Shaanxi Key Laboratory Bioresources, Hanzhong 723000, China
| | - Haiyan Sun
- School of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong 723000, China;
- Shaanxi Key Laboratory Bioresources, Hanzhong 723000, China
| | - Zhimin Xu
- School of Nutrition and Food Sciences, Louisiana State University, Baton Rouge, LA 70809, USA;
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11
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Guo X, Peng W, Xu X, Xie K, Yang X. The Potential of Endophytes in Improving Salt-Alkali Tolerance and Salinity Resistance in Plants. Int J Mol Sci 2023; 24:16917. [PMID: 38069239 PMCID: PMC10706814 DOI: 10.3390/ijms242316917] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 10/17/2023] [Accepted: 11/01/2023] [Indexed: 12/18/2023] Open
Abstract
Ensuring food security for the global population is a ceaseless and critical issue. However, high-salinity and high-alkalinity levels can harm agricultural yields throughout large areas, even in largely agricultural countries, such as China. Various physical and chemical treatments have been employed in different locations to mitigate high salinity and alkalinity but their effects have been minimal. Numerous researchers have recently focused on developing effective and environmentally friendly biological treatments. Endophytes, which are naturally occurring and abundant in plants, retain many of the same characteristics of plants owing to their simultaneous evolution. Therefore, extraction of endophytes from salt-tolerant plants for managing plant growth in saline-alkali soils has become an important research topic. This extraction indicates that the soil environment can be fundamentally improved, and the signaling pathways of plants can be altered to increase their defense capacity, and can even be inherited to ensure lasting efficacy. This study discusses the direct and indirect means by which plant endophytes mitigate the effects of plant salinity stress that have been observed in recent years.
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Affiliation(s)
- Xueying Guo
- College of Pharmacy, Chengdu University, Chengdu 610106, China; (X.G.); (W.P.); (X.X.); (K.X.)
- College of Life Sciences, Chongqing Normal University, Chongqing 401331, China
| | - Wanrong Peng
- College of Pharmacy, Chengdu University, Chengdu 610106, China; (X.G.); (W.P.); (X.X.); (K.X.)
- College of Life Sciences, Chongqing Normal University, Chongqing 401331, China
| | - Xinyi Xu
- College of Pharmacy, Chengdu University, Chengdu 610106, China; (X.G.); (W.P.); (X.X.); (K.X.)
| | - Kangwei Xie
- College of Pharmacy, Chengdu University, Chengdu 610106, China; (X.G.); (W.P.); (X.X.); (K.X.)
| | - Xingyong Yang
- College of Pharmacy, Chengdu University, Chengdu 610106, China; (X.G.); (W.P.); (X.X.); (K.X.)
- Antibiotics Research and Re-Evaluation Key Laboratory of Sichuan Province, Chengdu University, Chengdu 610106, China
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12
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Shahid M, Khan MS, Singh UB. Pesticide-tolerant microbial consortia: Potential candidates for remediation/clean-up of pesticide-contaminated agricultural soil. ENVIRONMENTAL RESEARCH 2023; 236:116724. [PMID: 37500042 DOI: 10.1016/j.envres.2023.116724] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2023] [Revised: 07/16/2023] [Accepted: 07/21/2023] [Indexed: 07/29/2023]
Abstract
Reclamation of pesticide-polluted lands has long been a difficult endeavour. The use of synthetic pesticides could not be restricted due to rising agricultural demand. Pesticide toxicity has become a pressing agronomic problem due to its adverse impact on agroecosystems, agricultural output, and consequently food security and safety. Among different techniques used for the reclamation of pesticide-polluted sites, microbial bioremediation is an eco-friendly approach, which focuses on the application of resilient plant growth promoting rhizobacteria (PGPR) that may transform or degrade chemical pesticides to innocuous forms. Such pesticide-resilient PGPR has demonstrated favourable effects on soil-plant systems, even in pesticide-contaminated environments, by degrading pesticides, providing macro-and micronutrients, and secreting active but variable secondary metabolites like-phytohormones, siderophores, ACC deaminase, etc. This review critically aims to advance mechanistic understanding related to the reduction of phytotoxicity of pesticides via the use of microbe-mediated remediation techniques leading to crop optimization in pesticide-stressed soils. The literature surveyed and data presented herein are extremely useful, offering agronomists-and crop protectionists microbes-assisted remedial strategies for affordably enhancing crop productivity in pesticide-stressed soils.
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Affiliation(s)
- Mohammad Shahid
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Kushmaur, Mau Nath Bhanjan, 275103, UP, India; Department of Agricultural Microbiology, Faculty of Agriculture Science, Aligarh Muslim University (A.M.U.), Aligarh, 202001, UP, India.
| | - Mohammad Saghir Khan
- Department of Agricultural Microbiology, Faculty of Agriculture Science, Aligarh Muslim University (A.M.U.), Aligarh, 202001, UP, India
| | - Udai B Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Kushmaur, Mau Nath Bhanjan, 275103, UP, India
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13
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Khalifa A, Alsowayeh N. Whole-Genome Sequence Insight into the Plant-Growth-Promoting Bacterium Priestia filamentosa Strain AZC66 Obtained from Zygophyllum coccineum Rhizosphere. PLANTS (BASEL, SWITZERLAND) 2023; 12:1944. [PMID: 37653860 PMCID: PMC10222010 DOI: 10.3390/plants12101944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Revised: 04/29/2023] [Accepted: 05/03/2023] [Indexed: 09/02/2023]
Abstract
This study aimed to isolate, screen the plant-growth-enhancing features, and explore the whole-genome sequence of AZC66 isolated from the rhizosphere of Zygophyllum coccineum and determine its biostimulating effects on the growth of cowpea under greenhouse conditions. Salkowski reagent was used to measure AZC66's indole acetic acid production. AZC66's inorganic phosphate solubility on Pikovskaya agar was evaluated using tricalcium phosphate. The results indicated the ability of AZC66 to fix nitrogen, produce IAA (66.33 ± 0.44 μg mL-1), solubilize inorganic phosphate, and exhibit the activity of ACC deaminase (278.40 ± 21 mol -ketobutyrate mg-1 h-1). Cowpea's root and shoot dry weights were also significantly increased after in vitro inoculation with AZC66. The identity of AZC66 was confirmed as Priestia filamentosa, and 4840 genes were predicted in its genome. The gene sequences were compared against the Kyoto Encyclopedia of Genes and Genomes (KEGG) database, and the results showed that the top three pathways wherein the maximum number of genes are involved are signaling and cellular processes, genetic information processing, and carbohydrate metabolism. The genome sequencing of the strain AZC66 revealed a number of genes implicated in plant biostimulation activities such as nitrogen fixation (nifU), phytohormone synthesis (trpAB genes), phosphate solubilization (PhbCEF, pstABCS, and phoU), and siderophore formation (FbpA, feoAB, and fetB). The AZC66 genome contained numerous genes involved in nitrogen metabolism, nitrogen regulation, and the nitrate reduction pathway. The phenazine biosynthetic gene in AZC66 demonstrated biocontrol and soil survival properties. The trehalose synthesis genes in AZC66 may help plants resist osmotic and salt stress. The discovery of glycine betaine, cold shock, and heat shock protein genes demonstrated that AZC66 could withstand harsh conditions. AZC66 might be used to create robust, sustainable biological fertilizers for future agricultural use in Saudi Arabia. Furthermore, the predicted adaptable metabolic pathways might serve as the basis for potential biotechnological applications in agriculture and industry.
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Affiliation(s)
- Ashraf Khalifa
- Biological Sciences Department, College of Science, King Faisal University, Al-Ahsa 31982, Saudi Arabia
- Botany and Microbiology Department, Faculty of Science, Beni-Suef University, Beni-Suef 62511, Egypt
| | - Noorah Alsowayeh
- Department of Biology, College of Education (Majmaah), Majmaah University, Al-Majmaah 11952, Saudi Arabia;
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14
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Chaudhary R, Kumar V, Gupta S, Naik B, Prasad R, Mishra S, Saris PEJ, Kumar V. Finger Millet ( Eleusine coracana) Plant-Endophyte Dynamics: Plant Growth, Nutrient Uptake, and Zinc Biofortification. Microorganisms 2023; 11:microorganisms11040973. [PMID: 37110396 PMCID: PMC10143119 DOI: 10.3390/microorganisms11040973] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 03/30/2023] [Accepted: 04/05/2023] [Indexed: 04/29/2023] Open
Abstract
Endophytic fungi and bacteria were isolated from finger millet and their effects on finger millet growth parameters and zinc and NPK contents in grains were studied. Out of 70 fungal and 112 bacterial endophytes, the two best fungal and bacterial isolates were selected on the basis of zinc solubilization and plant-growth-promoting attributes. The fungal isolates identified were Aspergillus terreus and Lecanicillium sp., and the bacterial isolates were Pseudomonas bijieensis and Priestia megaterium. The endophytic zinc, NPK mobilization, and plant-growth-promoting efficacy were determined in a pot experiment with zinc carbonate as the zinc source. Endophytic-primed plants showed enhanced shoot and root lengths compared to the unprimed control. Endophytes increased the zinc content in grains by between 12.12% and 18.80% compared to control plants. Endophytes also augmented the NPK concentrations in seeds compared to control plants and exhibited stability in a diverse range of pHs, temperatures, and NaCl concentrations, and exhibited growth on various carbohydrate and nitrogen sources. This is the first study reporting the interaction of Aspergillus terreus, Lecanicillium sp., Pseudomonas bijieensis, and Priestia megaterium with finger millet for grain Zn biofortification and NPK concentration enhancement. This study indicated that zinc-dissolving endophytes possess the potential for enhancing the zinc and NPK content in grains in addition to the plant-growth-promoting attributes.
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Affiliation(s)
- Renu Chaudhary
- Himalayan School of Biosciences, Swami Rama Himalayan University, Jolly Grant, Dehradun 248016, India
| | - Vijay Kumar
- Himalayan School of Biosciences, Swami Rama Himalayan University, Jolly Grant, Dehradun 248016, India
| | - Sanjay Gupta
- Himalayan School of Biosciences, Swami Rama Himalayan University, Jolly Grant, Dehradun 248016, India
| | - Bindu Naik
- Department of Life Sciences, Graphic Era (Deemed to be) University, Bell Road, Clement Town, Dehradun 248002, India
| | - Ram Prasad
- Department of Botany, School of Life Sciences, Mahatma Gandhi Central University, Motihari 845401, India
| | - Sadhna Mishra
- Faculty of Agricultural Sciences, GLA University, Mathura 281406, India
| | - Per Erik Joakim Saris
- Department of Microbiology, Faculty of Agriculture and Forestry, University of Helsinki, 00100 Helsinki, Finland
| | - Vivek Kumar
- Himalayan School of Biosciences, Swami Rama Himalayan University, Jolly Grant, Dehradun 248016, India
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15
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Syed A, Elgorban AM, Bahkali AH, Eswaramoorthy R, Iqbal RK, Danish S. Metal-tolerant and siderophore producing Pseudomonas fluorescence and Trichoderma spp. improved the growth, biochemical features and yield attributes of chickpea by lowering Cd uptake. Sci Rep 2023; 13:4471. [PMID: 36934106 PMCID: PMC10024765 DOI: 10.1038/s41598-023-31330-3] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Accepted: 03/09/2023] [Indexed: 03/20/2023] Open
Abstract
Industrialization and human urbanization have led to an increase in heavy metal (HM) pollution which often cause negative/toxic effect on agricultural crops. The soil-HMs cannot be degraded biologically however, microbe-mediated detoxification of toxic HMs into lesser toxic forms are reported. Considering the potentiality of HMs-tolerant soil microbes in metal detoxification, Pseudomonas fluorescence PGPR-7 and Trichoderma sp. T-4 were recovered from HM-affected areas. Under both normal and cadmium stress, the ability of both microorganisms to produce different plant hormones and biologically active enzymes was examined. Strains PGPR-7 and T-4 tolerated cadmium (Cd) an up-to 1800 and 2000 µg mL-1, respectively, and produced various plant growth regulating substances (IAA, siderophore, ACC deaminase ammonia and HCN) in Cd-stressed condition. The growth promoting and metal detoxifying ability of both strains were evaluated (either singly/combined) by applying them in chickpea (Cicer arietinum L.) plants endogenously contaminated with different Cd levels (0-400 µg kg-1 soils). The higher Cd concentration (400 µg kg-1 soils) negatively influenced the plant parameters which, however, improved following single/combined inoculation of P. fluorescence PGPR-7 and Trichoderma sp. T-4. Both microbial strains increased the growth of Cd-treated chickpeas however, their combined inoculation (PGPR-7 + T-4) caused the most positive effect. For instance, 25 µg Cd Kg-1 + PGPR-7 + T4 treatment caused maximum increase in germination percentage (10%), root dry biomass (71.4%) and vigour index (33%), chl-a (38%), chl-b (41%) and carotenoid content (52%). Furthermore, combined inoculation of P. fluorescence PGPR-7 and Trichoderma sp. T-4 maximally decreased the proline, MDA content, POD and CAT activities by 50%, 43% and 62%, respectively following their application in 25 µg Cd kg-1 soils-treated chickpea. Additionally, microbial strains lowered the plant uptake of Cd. For example, Cd-uptake in root tissues was decreased by 42 and 34% when 25 µg Cd Kg-1- treated chickpea plants were inoculated with P. fluorescence PGPR-7, Trichoderma sp. T-4 and co-inoculation (PGPR-7 + T4) of both strains, respectively. Therefore, from the current observation, it is suggested that dual inoculation of metal tolerant P. fluorescence and Trichoderma sp. may potentially be used in detoxification and reclamation of metal-contaminated soils.
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Affiliation(s)
- Asad Syed
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. 2455, Riyadh, 11451, Saudi Arabia
| | - Abdallah M Elgorban
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. 2455, Riyadh, 11451, Saudi Arabia
| | - Ali H Bahkali
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. 2455, Riyadh, 11451, Saudi Arabia
| | - Rajalakshmanan Eswaramoorthy
- Department of Prosthodontics, Saveetha Dental College and Hospitals, Saveetha Institute of Medical and Technical Sciences (SIMATS), Chennai, 600 077, India.
| | - Rana Khalid Iqbal
- Institute of Molecular Biology and Biotechnology, Bahauddin Zakariya University, Multan, Punjab, Pakistan
- Department of Biology, University of Padova, Padua, Italy
| | - Subhan Danish
- Department of Soil Science, Faculty of Agricultural Sciences and Technology, Bahauddin Zakariya University, Multan, Punjab, Pakistan.
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16
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Andreolli M, Lampis S, Tosi L, Marano V, Zapparoli G. Fungicide sensitivity of grapevine bacteria with plant growth-promoting traits and antagonistic activity as non-target microorganisms. World J Microbiol Biotechnol 2023; 39:121. [PMID: 36929028 PMCID: PMC10020324 DOI: 10.1007/s11274-023-03569-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Accepted: 03/07/2023] [Indexed: 03/18/2023]
Abstract
This study evaluates the capacity of commercial formulations of synthetic fungicides to inhibit grapevine bacterial growth when sprayed on vineyards to control diseases, such as downy mildew, powdery mildew and secondary rots. Fungicide sensitivity plate assays were carried out on bacteria isolated from vineyards that were also identified and characterized for their plant growth-promoting (PGP) traits and antifungal activity. The high taxonomic variability of bacteria screened with different chemical classes of fungicides is one new finding of this study. Seven out of 11 fungicides were able to inhibit the growth of bacteria at a concentration corresponding to the maximum dose allowed by law in spray treatments of vineyards. Bacterial sensitivity to each fungicide varied greatly. Many sensitive isolates displayed PGP traits and/or antagonistic activity. This study shows the potential impact of fungicidal treatments on grapevine bacterial microbiota. The involvement of bacteria beneficial to the growth and health of plants underlines the importance of this investigation. Our data reveal that the control of a certain disease may be possible using fungicides that have no or low impact on natural non-target microbiota. Understanding the action mechanisms of the active ingredients in these products is a priority for the development of new eco-friendly pesticides.
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Affiliation(s)
- Marco Andreolli
- Department of Biotechnology, University of Verona, Strada Le Grazie 15, Verona, 37134, Italy
| | - Silvia Lampis
- Department of Biotechnology, University of Verona, Strada Le Grazie 15, Verona, 37134, Italy
| | - Lorenzo Tosi
- AGREA Centro Studi, San Giovanni Lupatoto, Italy
| | - Viviana Marano
- Department of Biotechnology, University of Verona, Strada Le Grazie 15, Verona, 37134, Italy
| | - Giacomo Zapparoli
- Department of Biotechnology, University of Verona, Strada Le Grazie 15, Verona, 37134, Italy.
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17
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Shahid M, Singh UB, Khan MS, Singh P, Kumar R, Singh RN, Kumar A, Singh HV. Bacterial ACC deaminase: Insights into enzymology, biochemistry, genetics, and potential role in amelioration of environmental stress in crop plants. Front Microbiol 2023; 14:1132770. [PMID: 37180266 PMCID: PMC10174264 DOI: 10.3389/fmicb.2023.1132770] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Accepted: 03/20/2023] [Indexed: 05/16/2023] Open
Abstract
Growth and productivity of crop plants worldwide are often adversely affected by anthropogenic and natural stresses. Both biotic and abiotic stresses may impact future food security and sustainability; global climate change will only exacerbate the threat. Nearly all stresses induce ethylene production in plants, which is detrimental to their growth and survival when present at higher concentrations. Consequently, management of ethylene production in plants is becoming an attractive option for countering the stress hormone and its effect on crop yield and productivity. In plants, ACC (1-aminocyclopropane-1-carboxylate) serves as a precursor for ethylene production. Soil microorganisms and root-associated plant growth promoting rhizobacteria (PGPR) that possess ACC deaminase activity regulate growth and development of plants under harsh environmental conditions by limiting ethylene levels in plants; this enzyme is, therefore, often designated as a "stress modulator." TheACC deaminase enzyme, encoded by the AcdS gene, is tightly controlled and regulated depending upon environmental conditions. Gene regulatory components of AcdS are made up of the LRP protein-coding regulatory gene and other regulatory components that are activated via distinct mechanisms under aerobic and anaerobic conditions. ACC deaminase-positive PGPR strains can intensively promote growth and development of crops being cultivated under abiotic stresses including salt stress, water deficit, waterlogging, temperature extremes, and presence of heavy metals, pesticides and other organic contaminants. Strategies for combating environmental stresses in plants, and improving growth by introducing the acdS gene into crop plants via bacteria, have been investigated. In the recent past, some rapid methods and cutting-edge technologies based on molecular biotechnology and omics approaches involving proteomics, transcriptomics, metagenomics, and next generation sequencing (NGS) have been proposed to reveal the variety and potential of ACC deaminase-producing PGPR that thrive under external stresses. Multiple stress-tolerant ACC deaminase-producing PGPR strains have demonstrated great promise in providing plant resistance/tolerance to various stressors and, therefore, it could be advantageous over other soil/plant microbiome that can flourish under stressed environments.
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Affiliation(s)
- Mohammad Shahid
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau, Uttar Pradesh, India
- *Correspondence: Mohammad Shahid, ; Udai B. Singh, ; Prakash Singh,
| | - Udai B. Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau, Uttar Pradesh, India
- *Correspondence: Mohammad Shahid, ; Udai B. Singh, ; Prakash Singh,
| | - Mohammad Saghir Khan
- Department of Agricultural Microbiology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh, Uttar Pradesh, India
| | - Prakash Singh
- Department of Plant Breeding and Genetics, Veer Kunwar Singh College of Agriculture, Bihar Agricultural University, Dumraon, India
- *Correspondence: Mohammad Shahid, ; Udai B. Singh, ; Prakash Singh,
| | - Ratan Kumar
- Krishi Vigyan Kendra, Rohtas, Bihar Agricultural University, Bikramganj, Bihar, India
| | - Raj Narian Singh
- Directorate of Extension Education, Bihar Agricultural University, Bhagalpur, Bihar, India
| | - Arun Kumar
- Swamy Keshwanand Rajasthan Agriculture University, Bikaner, Rajasthan, India
| | - Harsh V. Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms (NBAIM), Mau, Uttar Pradesh, India
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18
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Shahid M, Khan MS. Ecotoxicological implications of residual pesticides to beneficial soil bacteria: A review. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2022; 188:105272. [PMID: 36464377 DOI: 10.1016/j.pestbp.2022.105272] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Revised: 10/02/2022] [Accepted: 10/23/2022] [Indexed: 06/17/2023]
Abstract
Optimization of crop production in recent times has become essential to fulfil food demands of constantly increasing human populations worldwide. To address this formidable challenge, application of agro-chemicals including synthetic pesticides in intensive farm practices has increased alarmingly. The excessive and indiscriminate application of pesticides to foster food production however, leads to its exorbitant deposition in soils. After accumulation in soils beyond threshold limits, pesticides harmfully affect the abundance, diversity and composition and functions of rhizosphere microbiome. Also, the cost of pesticides and emergence of resistance among insect-pests against pesticides are other reasons that require attention. Due to this, loss in soil nutrient pool cause a substantive reduction in agricultural production which warrant the search for newer environmentally friendly technology for sustainable crop production. Rhizosphere microbes, in this context, play vital roles in detoxifying the polluted environment making soil amenable for cultivation through detoxification of pollutants, rhizoremediation, bioremediation, pesticide degradation, and stress alleviation, leading to yield optimization. The response of soil microorganisms to range of chemical pesticides is variable ranging from unfavourable to the death of beneficial microbes. At cellular and biochemical levels, pesticides destruct the morphology, ultrastructure, viability/cellular permeability, and many biochemical reactions including protein profiles of soil bacteria. Several classes of pesticides also disturb the molecular interaction between crops and their symbionts impeding the overall useful biological processes. The harmful impact of pesticides on soil microbes, however, is poorly researched. In this review, the recent findings related with potential effects of synthetic pesticides on a range of soil microbiota is highlighted. Emphasis is given to find and suggest strategies to minimize the chemical pesticides usage in the real field conditions to preserve the viability of soil beneficial bacteria and soil quality for safe and sustainable crop production even in pesticide contaminated soils.
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Affiliation(s)
- Mohammad Shahid
- Department of Agricultural Microbiology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh 202002, Uttar Pradesh, India.
| | - Mohammad Saghir Khan
- Department of Agricultural Microbiology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh 202002, Uttar Pradesh, India
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