High Frequency of Antibiotic Resistance Genes (ARGs) in the Lerma River Basin, Mexico

Evidencing anthropogenic pollution of surface waters in a tropical region: a case study of the Culiacan River basin

Nowadays, one of the most critical challenges is reduced access to water. Climate change, industrialization, and population growth have caused many countries to suffer from water crises, especially in arid and semi-arid areas. The Culiacan River basin in Sinaloa is a region of great importance in Mexico due to its intensive agricultural activity. Hence, water quality assessment has become a necessity to ensure sustainable water use. This study describes the spatiotemporal water quality features of the Humaya, Tamazula, and Culiacan Rivers within the Culiacan River basin and their sources of contamination. Twenty-two water quality parameters were analyzed from samples taken every 6 months from 2012 to 2020 at 19 sampling sites in the basin. A multivariate statistical analysis revealed significant correlations (r > 0.85) between the water quality parameters. The modified Integrated Water Quality Index (IWQI) identified severe pollution in samples from the urban river section of the basin, while good water quality conditions were found upstream. Severe contamination was observed in 26.32% of the samples, whereas only 13.45% evidenced good water quality. The Water Quality Index (WQI) indicated that 94.74% of the samples presented fair water quality, suggesting that the surface waters of the Culiacan River Basin are suitable for agricultural irrigation. This study provides insights into the current water quality status of the surface waters in the Culiacan River Basin, identifying significant pollution sources and areas of concern. The spatiotemporal dynamics of water quality in the Culiacan River basin revealed the importance of continuous monitoring and effective water management practices to improve water quality and achieve sustainable agricultural practices.

Antibiotic resistance genes profile in the surface sediments of typical aquaculture areas across 15 major lakes in China

Aquatic farming is considered as a major source of antibiotic resistant bacteria (ARB) and antibiotic resistance genes (ARGs) for the natural environment of the lakes. ARB and ARGs in the natural environment have increased quickly because of the human activities. Here, we have profiled the diversity and abundance of ARGs in sediments from the typical aquaculture areas around 15 major lakes in China using PCR and qPCR, and further assessed the risk factor shaping the occurrence and distribution of ARGs. And class 1, 2 and 3 integrons were initially detected by PCR with specific primers. ARGs were widely distributed in the lakes: Weishan Lake and Poyang Lake showed high diversity of ARGs, followed by Dongting Lake, Chao Lake and Tai Lake. Generally, the ARGs in the Middle-Lower Yangtze Plain were more abundant than those in the Qinghai-Tibet Plateau. Tetracycline resistance genes (tet(C), tet(A) & tet(M)) were prominent in sediments, and the next was AmpC β-lactamase gene group BIL/LAT/CMY, and the last was the genes resistance to aminoglycoside (strA-strB). Partial least squares path modeling analysis (PLS-PMA) revealed that livestock had a significant direct effect on the distribution of ARGs in lakes, and population might indirectly influence the profiles of ARGs by affecting the scale of livestock and aquaculture. The detectable rate of class 1, 2 and 3 integrons were 80%, 100% and 46.67%, respectively. The prevalence of integrons might play a key role in promoting more frequent horizontal gene transfer (HGT) events, resulting in the environmental mobilization and dissemination of ARGs between bacteria.

Molecular Evidence for Occurrence of Heavy Metal and Antibiotic Resistance Genes Among Predominant Metal Tolerant Pseudomonas sp. and Serratia sp. Prevalent in the Teesta River

Riverine ecosystems polluted by pharmaceutical and metal industries are potential incubators of bacteria with dual resistance to heavy metals and antibiotics. The processes of co-resistance and cross resistance that empower bacteria to negotiate these challenges, strongly endorse dangers of antibiotic resistance generated by metal stress. Therefore, investigation into the molecular evidence of heavy metal and antibiotic resistance genes was the prime focus of this study. The selected Pseudomonas and Serratia species isolates evinced by their minimum inhibitory concentration and multiple antibiotic resistance (MAR) index showed significant heavy metal tolerance and multi-antibiotic resistance capability, respectively. Consequently, isolates with higher tolerance for the most toxic metal cadmium evinced high MAR index value (0.53 for Pseudomonas sp., and 0.46 for Serratia sp.) in the present investigation. Metal tolerance genes belonging to P_IB-type and resistance nodulation division family of proteins were evident in these isolates. The antibiotic resistance genes like mexB, mexF and mexY occurred in Pseudomonas isolates while sdeB genes were present in Serratia isolates. Phylogenetic incongruency and GC composition analysis of P_IB-type genes suggested that some of these isolates had acquired resistance through horizontal gene transfer (HGT). Therefore, the Teesta River has become a reservoir for resistant gene exchange or movement via selective pressure exerted by metals and antibiotics. The resultant adaptive mechanisms and altered phenotypes are potential tools to track metal tolerant strains with clinically significant antibiotic resistance traits.